View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5529-Insertion-5 (Length: 477)
Name: NF5529-Insertion-5
Description: NF5529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5529-Insertion-5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 477
Target Start/End: Original strand, 4720997 - 4721464
Alignment:
| Q |
8 |
aatatcccaatgaagacaaggcacatattcttcaaagaaaagcaccacgaaggtgcacgggaagccctgtgcgtattgcagtgctggagcgcgtcaggat |
107 |
Q |
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| T |
4720997 |
aatatcccaatgaagacaaggcacatattcttcaaagaaaagcaccacgaaggtgcacgggaagccctgtgcgtattgcagtgctggagcgcgtcaggat |
4721096 |
T |
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| Q |
108 |
taatcctagccatcagaatcatctctaaccgctttcaaaacctagaggcagttatcaacatatccccaactatataagtgtgactcagcatcatgttcaa |
207 |
Q |
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| T |
4721097 |
taatcctagccgtcagaatcatctctagcggctttcaaaacctagaggcagttatcaacata--ctcgactatataagtgtgactcaacatcatgatcaa |
4721194 |
T |
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| Q |
208 |
ggtacaatctcattcacccatattttgcacacagtccacctctcgcacatacagacttgagggtgcacaattctcctctactacggaagctgcttagcac |
307 |
Q |
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| T |
4721195 |
agtacaatctcattcacccattttttgcacacaatccacctctcgcacatacagacttgagggtgcacaattctcctctactactgaagctgcttagcac |
4721294 |
T |
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| Q |
308 |
tgcgaaccaccgcaatagcagtcatcctcaccagagaaccaccagcatgtttcttcaatcttcaacgaacaaatcaaaagtaaatgtcgaataataaaat |
407 |
Q |
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| T |
4721295 |
tgtgaaccactgcaatagcagtcatcctcaccagagaaccaccagcatgtttcttcaatcttcaactaacaaatcaaaagtaaatgtcgaataataaaat |
4721394 |
T |
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| Q |
408 |
ggcacaacatgagaagatccagattaaagagtatgcaccatgacgacaaatggaatatcatggcgataac |
477 |
Q |
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| T |
4721395 |
ggcacaacatgagaagatccagattaaagagtatgcaccatgacgacaaatggaatatcatggcgataac |
4721464 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 177 - 251
Target Start/End: Complemental strand, 10597480 - 10597406
Alignment:
| Q |
177 |
ctatataagtgtgactcagcatcatgttcaaggtacaatctcattcacccatattttgcacacagtccacctctc |
251 |
Q |
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| T |
10597480 |
ctatataagcgtgactcagcgtcacgctcaaggtacactttcattcacccaaatttcgcacacaatccacctctc |
10597406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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