View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5529_high_3 (Length: 291)
Name: NF5529_high_3
Description: NF5529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5529_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 36000751 - 36000488
Alignment:
| Q |
18 |
gcgagatgaccaacaataacaatttattcccccaacaaagaggaagaggacttgaataatagatatttgcatgaatgtttcaaatcggtaagaatcttca |
117 |
Q |
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| T |
36000751 |
gcgagatgaccaacaataacaatttattcccctaacaaagaggaagaggacttgaataatagatatttgcatgaatgtttcaaatcggtaagaatcttca |
36000652 |
T |
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| Q |
118 |
cccta----ttcctaatttatttnnnnnnncaa----tttaatcatttcaatgaagaaaataattcttaagaaaatactcatgacagattctaaaaaatg |
209 |
Q |
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| T |
36000651 |
ccctagctattcctaatttatttaaaaaaaaaaaaaatttaatcatttcaatgaagaaaataattcttaagaaaatactcatgacagattctaaaaaatg |
36000552 |
T |
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| Q |
210 |
atgtcagatagataaattgcattaacattgtgttgaaacaatgtattggacaggtcttttgaag |
273 |
Q |
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| T |
36000551 |
atgtcagatagataaattgcattaacattgtgttgaaacaatgtattggacaggtcttttgaag |
36000488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 36021861 - 36021803
Alignment:
| Q |
63 |
gaggacttgaataatagatatttgcatgaatgtttcaaatcggtaagaatcttcaccct |
121 |
Q |
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| T |
36021861 |
gaggacttgaataataaatctttgcatgaacgttcaaaatcggtatggatcttcaccct |
36021803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 36016500 - 36016448
Alignment:
| Q |
218 |
tagataaattgcattaacattgtgttgaaacaatgtattggacaggtcttttg |
270 |
Q |
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| T |
36016500 |
tagataaattgcaatagcattgtgttgaaacaacacattggacatgtcttttg |
36016448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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