View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5529_low_5 (Length: 272)
Name: NF5529_low_5
Description: NF5529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5529_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 136 - 254
Target Start/End: Original strand, 38327397 - 38327518
Alignment:
| Q |
136 |
atcaaaaaacaatgttggaccaatctcannnnnnn---cctttatctatatgtatatggatacgcgtagatggaaaaatacgcttacaaataacatggag |
232 |
Q |
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| T |
38327397 |
atcaaaaaacaatgttggaccaatctcattttttttttcctttatctatatgtatatggatacgcgtagatggaaaaatacgcttacaaataacatggag |
38327496 |
T |
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| Q |
233 |
aattgaattgaagtgtaccatg |
254 |
Q |
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| T |
38327497 |
aattgaattgaagtgtaccatg |
38327518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 38327219 - 38327297
Alignment:
| Q |
1 |
aagccattaaggaagagactcgtggtgcactcttccgtggacccaaacaacttcacactcgagtcaatagccgtacaca |
79 |
Q |
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| T |
38327219 |
aagccattaaggaagagactcgtggtgcactcttccgtggacccaaacaacttcacactcgagtcaatagccgtacaca |
38327297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 113
Target Start/End: Original strand, 38327346 - 38327380
Alignment:
| Q |
79 |
attgcatcagccttggaaacattaacaatgttgga |
113 |
Q |
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| T |
38327346 |
attgcatcagccttggaaacattaacaatgttgga |
38327380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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