View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5531-Insertion-1 (Length: 590)
Name: NF5531-Insertion-1
Description: NF5531
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5531-Insertion-1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 7 - 590
Target Start/End: Original strand, 35199040 - 35199618
Alignment:
| Q |
7 |
accgctaactattttttattccccatcaagcctaccttacttacacgtatgaaacctagataagtagtagacacaaatatgatacgatgtggatattgaa |
106 |
Q |
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| T |
35199040 |
accgctaactattttttattccccatcaagcctaccttacttac--gtatgaaacctagataagtagtagacacaaatatgatacaatgtggatattgaa |
35199137 |
T |
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| Q |
107 |
attttttaaaattcaacataagacatggactagatacattaacaaaatttcattnnnnnnnnnntgctataactgttatcaatttaatgaaattttgtga |
206 |
Q |
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| T |
35199138 |
attttttaaaattcaacataagacatggactagatacattaacaaaatttcattaaaaaaa---tgctataacctttatcaatttaatgaaattttgtga |
35199234 |
T |
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| Q |
207 |
tgatacttcttttgaatgcaatgatacttggtaaaagtgatattacaatcaacgtctagtgttaattagaaaacaaattttttgtattagataacaatta |
306 |
Q |
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| T |
35199235 |
tgatacttcttttgaatgcaatgatacttggtaaaagtgatattacaatcaacgtctagtgttaattagaaaacaaattttttgtattagataacaatta |
35199334 |
T |
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| Q |
307 |
tcaagttggaaaaggaagttaccctaggaaaatatctgtgataagtataataagaaacgccttcccagtatcagaaatattgtttattattttataacca |
406 |
Q |
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| T |
35199335 |
tcaagttggaaaaggaagttaccctaggaaaatatctgtgataagtataataagaaacgccttcccagtatcagaaatattgtttattattttataacca |
35199434 |
T |
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| Q |
407 |
gtaaatttgagcaaagctacctgcacaacatgagcaaagaaacaaaaccaatatgattattttagatgaaaatatagaataaattattagtaaacatcga |
506 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35199435 |
gtaaatttgagcaaagctacctgcgcaacatgagcaaagaaacaaaaccaatatgattattttagatgaaaatatagaataaattattagtaaacatcga |
35199534 |
T |
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| Q |
507 |
caacctaaatagaaaaacaacttaggaaatattcagaagacaaatgcaacataacccaagtcatctgccgtagtaaggaagcct |
590 |
Q |
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| T |
35199535 |
caaccaaaatagaaaaacaacttaggaaatattcagaagacaaatgcaacataacccaagtcatctgccgtagtaaggaagcct |
35199618 |
T |
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