View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5532-Insertion-4 (Length: 502)
Name: NF5532-Insertion-4
Description: NF5532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5532-Insertion-4 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 73 - 502
Target Start/End: Original strand, 1535266 - 1535695
Alignment:
| Q |
73 |
gcatatgataggaatttttcccgttagggccatgcttgagtctcggattctgagacgttacagttgacatattacgagaaaagctactaactcgagtctt |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1535266 |
gcatatgataggaatttttcccgttagggccatgcttgagtctcggattctgagatgttacagttgacatattacgagaaaagctactaactcgagtctt |
1535365 |
T |
|
| Q |
173 |
tgttgcatccattcaataatgtccgagaaaagctacattacagttgacacattaggagaaaagctcaaattcatattgttagtgaaagaaatattggctt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1535366 |
tgttgcatccattcaataatgtccgagaaaagctacattacagttgacacattaggagaaaagctcaaattcatattgttagtgaaagaaatattggctt |
1535465 |
T |
|
| Q |
273 |
catattgcagaggaaatgttggattcatttctaccgatgcgaaccagaatgctaatgaaagaaaatttgaatagaaaggattcaaaggaagctatttata |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1535466 |
catattgcagaggaaatgttggattcatttctatcgatgcgaaccagaatgctaatgaaagaaaatttgaatagaaaggattcaaaggaagctatttata |
1535565 |
T |
|
| Q |
373 |
tgtaaaactaatacatcaccaccagagtagtctttgtcacaactcaattgatgtaaaacaagaaattcatatgggattagcttagacttgtagaaaaggt |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1535566 |
tgtaaaactaatacatcaccaccagagtagtctttgtcacaactcaattgatgtaaaacaagaaattcatatgggattagcttagacttgtagaaaaggt |
1535665 |
T |
|
| Q |
473 |
ccatctctaatgattaaattctcatttttg |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1535666 |
ccatctctaatgattaaattctcatttttg |
1535695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 79 - 190
Target Start/End: Original strand, 1468499 - 1468611
Alignment:
| Q |
79 |
gataggaatttt-tcccgttagggccatgcttgagtctcggattctgagacgttacagttgacatattacgagaaaagctactaactcgagtctttgttg |
177 |
Q |
| |
|
||||||||| || |||| |||||||| |||||||||| | ||||||||||||||||||||| | ||| |||||||||||||||||||||||| |||||| |
|
|
| T |
1468499 |
gataggaatgttgtcccattagggccgtgcttgagtcctgaattctgagacgttacagttgatacattgcgagaaaagctactaactcgagtccttgttg |
1468598 |
T |
|
| Q |
178 |
catccattcaata |
190 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
1468599 |
cagccattcaata |
1468611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University