View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5532-Insertion-5 (Length: 416)

Name: NF5532-Insertion-5
Description: NF5532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5532-Insertion-5
NF5532-Insertion-5
[»] chr3 (47 HSPs)
chr3 (7-243)||(1836840-1837070)
chr3 (13-243)||(41384878-41385090)
chr3 (317-413)||(19984847-19984941)
chr3 (319-386)||(46719941-46720008)
chr3 (252-318)||(28161030-28161096)
chr3 (317-386)||(28263145-28263214)
chr3 (317-413)||(52276302-52276396)
chr3 (317-408)||(51038804-51038893)
chr3 (319-413)||(49216247-49216339)
chr3 (252-318)||(4101175-4101241)
chr3 (252-318)||(48663350-48663416)
chr3 (316-386)||(52281581-52281651)
chr3 (313-386)||(7758396-7758469)
chr3 (317-402)||(19986090-19986175)
chr3 (317-386)||(28262191-28262259)
chr3 (318-413)||(29932708-29932800)
chr3 (318-413)||(29981862-29981954)
chr3 (318-386)||(46721254-46721322)
chr3 (318-413)||(54540799-54540892)
chr3 (315-413)||(8875902-8875998)
chr3 (314-373)||(47615595-47615654)
chr3 (316-413)||(534496-534591)
chr3 (322-402)||(54987027-54987103)
chr3 (318-413)||(18442629-18442723)
chr3 (314-386)||(18456097-18456170)
chr3 (318-413)||(19487703-19487797)
chr3 (317-408)||(22776826-22776915)
chr3 (322-366)||(39843054-39843098)
chr3 (319-413)||(47614185-47614277)
chr3 (319-369)||(53901439-53901487)
chr3 (319-373)||(8338940-8338994)
chr3 (315-403)||(12700171-12700255)
chr3 (311-373)||(26633605-26633667)
chr3 (317-359)||(31039253-31039295)
chr3 (315-373)||(40836428-40836486)
chr3 (319-373)||(46673296-46673350)
chr3 (315-373)||(47609693-47609751)
chr3 (317-367)||(51347266-51347316)
chr3 (319-363)||(784995-785039)
chr3 (332-372)||(23320380-23320420)
chr3 (318-413)||(24516459-24516552)
chr3 (317-373)||(25179576-25179632)
chr3 (318-366)||(33279585-33279633)
chr3 (317-373)||(40630629-40630685)
chr3 (317-373)||(47610627-47610683)
chr3 (319-371)||(51037536-51037587)
chr3 (318-413)||(54539754-54539847)
[»] chr6 (33 HSPs)
chr6 (7-207)||(18640359-18640559)
chr6 (252-318)||(6807582-6807648)
chr6 (318-402)||(3333046-3333128)
chr6 (315-378)||(6842325-6842388)
chr6 (252-318)||(5320372-5320438)
chr6 (313-413)||(16704506-16704604)
chr6 (317-413)||(27437826-27437920)
chr6 (316-372)||(16415581-16415637)
chr6 (318-366)||(20973353-20973401)
chr6 (316-377)||(13345549-13345609)
chr6 (319-366)||(3333581-3333628)
chr6 (318-373)||(3721611-3721666)
chr6 (314-373)||(8821868-8821927)
chr6 (319-373)||(8822840-8822894)
chr6 (317-367)||(27447966-27448016)
chr6 (316-373)||(8659262-8659319)
chr6 (314-367)||(26239952-26240005)
chr6 (317-373)||(7316341-7316397)
chr6 (317-403)||(10784590-10784675)
chr6 (316-372)||(22968404-22968460)
chr6 (316-372)||(23819933-23819989)
chr6 (319-386)||(3333149-3333215)
chr6 (319-413)||(7314880-7314971)
chr6 (321-372)||(26717132-26717183)
chr6 (324-367)||(29473082-29473125)
chr6 (313-367)||(15907924-15907978)
chr6 (319-373)||(18749378-18749432)
chr6 (316-372)||(6840191-6840245)
chr6 (316-373)||(24051006-24051063)
chr6 (322-413)||(1829612-1829701)
chr6 (315-371)||(3722556-3722612)
chr6 (315-367)||(8412754-8412806)
chr6 (318-370)||(34834177-34834229)
[»] chr8 (29 HSPs)
chr8 (252-318)||(35448994-35449060)
chr8 (315-404)||(42982675-42982762)
chr8 (252-318)||(43265326-43265392)
chr8 (252-316)||(774080-774144)
chr8 (319-413)||(22220388-22220480)
chr8 (316-386)||(32968453-32968523)
chr8 (318-386)||(38980078-38980146)
chr8 (318-386)||(39011175-39011243)
chr8 (319-386)||(38974795-38974862)
chr8 (319-386)||(39005893-39005960)
chr8 (319-385)||(36249552-36249618)
chr8 (315-372)||(36337621-36337678)
chr8 (318-413)||(12351920-12352013)
chr8 (318-413)||(22221373-22221466)
chr8 (318-413)||(22227715-22227808)
chr8 (314-366)||(30927682-30927734)
chr8 (319-413)||(10006344-10006436)
chr8 (319-386)||(32973970-32974037)
chr8 (317-386)||(10007797-10007866)
chr8 (317-373)||(21930051-21930107)
chr8 (314-386)||(29043393-29043465)
chr8 (315-370)||(7117366-7117421)
chr8 (317-367)||(8389742-8389792)
chr8 (252-318)||(10290431-10290497)
chr8 (317-413)||(11282006-11282100)
chr8 (316-373)||(19392816-19392873)
chr8 (315-368)||(30568883-30568935)
chr8 (319-367)||(3380199-3380247)
chr8 (313-373)||(11456632-11456692)
[»] scaffold0049 (2 HSPs)
scaffold0049 (318-413)||(7424-7517)
scaffold0049 (319-386)||(7538-7604)
[»] chr5 (34 HSPs)
chr5 (318-413)||(21835040-21835132)
chr5 (315-373)||(38476727-38476785)
chr5 (317-413)||(33160295-33160389)
chr5 (315-413)||(25523065-25523161)
chr5 (318-373)||(31576609-31576664)
chr5 (314-372)||(20653815-20653873)
chr5 (319-373)||(41663772-41663826)
chr5 (317-386)||(16650889-16650958)
chr5 (258-318)||(25739691-25739751)
chr5 (315-366)||(2373143-2373194)
chr5 (317-372)||(23040287-23040342)
chr5 (319-404)||(22940640-22940723)
chr5 (252-318)||(33672777-33672843)
chr5 (322-402)||(24332916-24332994)
chr5 (317-413)||(25055410-25055504)
chr5 (321-369)||(15885132-15885180)
chr5 (317-373)||(40255719-40255775)
chr5 (275-318)||(16929404-16929447)
chr5 (319-366)||(21834856-21834903)
chr5 (319-370)||(21834969-21835019)
chr5 (319-413)||(25056390-25056482)
chr5 (319-373)||(18695004-18695058)
chr5 (252-318)||(35228823-35228889)
chr5 (322-384)||(42195137-42195197)
chr5 (314-367)||(2373401-2373454)
chr5 (317-366)||(5778890-5778939)
chr5 (318-387)||(18485137-18485206)
chr5 (317-386)||(18486936-18487005)
chr5 (313-366)||(20216817-20216870)
chr5 (315-372)||(28538672-28538729)
chr5 (319-372)||(40428888-40428941)
chr5 (314-373)||(5777896-5777953)
chr5 (318-366)||(16307734-16307782)
chr5 (319-371)||(35302165-35302217)
[»] chr1 (28 HSPs)
chr1 (315-413)||(51685774-51685870)
chr1 (317-403)||(35067021-35067105)
chr1 (319-413)||(51684366-51684458)
chr1 (252-318)||(47974447-47974513)
chr1 (315-413)||(24422796-24422892)
chr1 (314-386)||(35595226-35595299)
chr1 (317-385)||(12390016-12390084)
chr1 (258-373)||(24196511-24196627)
chr1 (318-413)||(45157218-45157310)
chr1 (315-413)||(43060015-43060111)
chr1 (252-318)||(126210-126276)
chr1 (314-368)||(2260629-2260683)
chr1 (252-318)||(24766382-24766448)
chr1 (318-367)||(11436041-11436090)
chr1 (322-402)||(39153136-39153214)
chr1 (319-386)||(39222507-39222575)
chr1 (313-373)||(46432466-46432526)
chr1 (316-367)||(11190382-11190433)
chr1 (316-367)||(23980519-23980570)
chr1 (318-373)||(52827346-52827401)
chr1 (319-373)||(29182001-29182055)
chr1 (281-318)||(3170327-3170364)
chr1 (281-318)||(8340838-8340875)
chr1 (318-367)||(21945707-21945755)
chr1 (318-398)||(52274967-52275045)
chr1 (319-367)||(2260378-2260426)
chr1 (315-367)||(11437252-11437304)
chr1 (315-367)||(52828123-52828175)
[»] scaffold0044 (1 HSPs)
scaffold0044 (252-318)||(83815-83881)
[»] chr4 (35 HSPs)
chr4 (252-318)||(13763307-13763373)
chr4 (318-398)||(3927665-3927743)
chr4 (313-413)||(31600994-31601092)
chr4 (319-403)||(50909692-50909774)
chr4 (319-403)||(1834119-1834201)
chr4 (315-386)||(1963192-1963263)
chr4 (316-413)||(26421631-26421725)
chr4 (252-318)||(29947865-29947931)
chr4 (318-386)||(3928892-3928960)
chr4 (319-386)||(10447006-10447074)
chr4 (318-369)||(20919582-20919633)
chr4 (318-372)||(24626221-24626275)
chr4 (317-413)||(1835111-1835205)
chr4 (314-398)||(10448284-10448366)
chr4 (318-371)||(10470545-10470598)
chr4 (316-373)||(25685869-25685926)
chr4 (316-373)||(48780245-48780302)
chr4 (322-413)||(12129626-12129715)
chr4 (314-413)||(13509368-13509464)
chr4 (317-373)||(13826418-13826474)
chr4 (321-369)||(36729309-36729357)
chr4 (318-373)||(4098656-4098711)
chr4 (316-371)||(5304597-5304652)
chr4 (318-373)||(6789208-6789263)
chr4 (319-408)||(1964455-1964542)
chr4 (319-373)||(10471435-10471489)
chr4 (316-373)||(1961174-1961231)
chr4 (281-318)||(44420595-44420632)
chr4 (318-367)||(48781098-48781147)
chr4 (322-413)||(8758846-8758935)
chr4 (319-371)||(25684934-25684986)
chr4 (315-371)||(39702666-39702722)
chr4 (315-367)||(41877280-41877332)
chr4 (317-404)||(49308045-49308129)
chr4 (274-310)||(50313487-50313523)
[»] chr2 (21 HSPs)
chr2 (252-318)||(1659296-1659362)
chr2 (252-318)||(17105912-17105978)
chr2 (252-318)||(38433039-38433105)
chr2 (322-373)||(13830270-13830320)
chr2 (316-372)||(28365509-28365565)
chr2 (317-403)||(36449776-36449860)
chr2 (315-373)||(38716190-38716248)
chr2 (315-367)||(7899935-7899987)
chr2 (317-373)||(9051277-9051333)
chr2 (315-367)||(15700743-15700795)
chr2 (318-373)||(26829335-26829390)
chr2 (315-373)||(30714271-30714329)
chr2 (318-402)||(802611-802692)
chr2 (316-373)||(18538078-18538135)
chr2 (317-366)||(38840547-38840596)
chr2 (329-373)||(2986696-2986740)
chr2 (317-373)||(2986936-2986992)
chr2 (333-408)||(5819727-5819800)
chr2 (317-403)||(18797244-18797329)
chr2 (316-372)||(18904364-18904420)
chr2 (318-366)||(22067838-22067886)
[»] scaffold1303 (1 HSPs)
scaffold1303 (317-413)||(1437-1531)
[»] scaffold0586 (1 HSPs)
scaffold0586 (313-413)||(6337-6435)
[»] scaffold0019 (1 HSPs)
scaffold0019 (319-403)||(60090-60172)
[»] chr7 (22 HSPs)
chr7 (252-311)||(38871286-38871345)
chr7 (317-413)||(21505414-21505506)
chr7 (252-318)||(36828093-36828159)
chr7 (252-318)||(37617703-37617769)
chr7 (316-408)||(7501866-7501956)
chr7 (252-318)||(4968648-4968714)
chr7 (315-373)||(19919851-19919909)
chr7 (318-367)||(15681594-15681643)
chr7 (318-366)||(9822323-9822371)
chr7 (318-366)||(10724248-10724296)
chr7 (317-373)||(17782600-17782656)
chr7 (317-373)||(19493566-19493622)
chr7 (317-373)||(21224602-21224658)
chr7 (318-373)||(20636868-20636923)
chr7 (318-373)||(27869195-27869250)
chr7 (316-373)||(3227641-3227698)
chr7 (318-367)||(5111441-5111490)
chr7 (317-370)||(32253448-32253501)
chr7 (274-318)||(4553967-4554011)
chr7 (321-373)||(17781663-17781715)
chr7 (316-372)||(24448289-24448345)
chr7 (313-373)||(31949316-31949376)
[»] scaffold0003 (2 HSPs)
scaffold0003 (317-413)||(49442-49536)
scaffold0003 (317-367)||(39342-39392)
[»] scaffold0227 (1 HSPs)
scaffold0227 (314-386)||(153-225)
[»] scaffold0294 (1 HSPs)
scaffold0294 (316-413)||(5447-5542)
[»] scaffold0002 (1 HSPs)
scaffold0002 (316-373)||(454926-454983)
[»] scaffold0320 (1 HSPs)
scaffold0320 (314-413)||(19483-19580)
[»] scaffold0369 (1 HSPs)
scaffold0369 (318-379)||(13192-13251)
[»] scaffold0321 (1 HSPs)
scaffold0321 (321-401)||(18730-18808)
[»] scaffold0302 (1 HSPs)
scaffold0302 (316-403)||(17467-17552)
[»] scaffold0062 (2 HSPs)
scaffold0062 (315-367)||(49655-49707)
scaffold0062 (315-367)||(62194-62246)
[»] scaffold2034 (1 HSPs)
scaffold2034 (319-386)||(233-300)
[»] scaffold0406 (1 HSPs)
scaffold0406 (312-373)||(1990-2051)
[»] scaffold1875 (1 HSPs)
scaffold1875 (317-373)||(754-810)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 7 - 243
Target Start/End: Complemental strand, 1837070 - 1836840
Alignment:
Q  7 aatcagttggttgttaatactcgggttgggttcatgatggcaagttagttaagggaaaaagaagaaggtaaatatgacactttgaatgcttcnnnnnnnc 106  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  1837070 aatcagttggttgttaatactcaggttgggttcatgatggcaagttagttaagggaaaaagaagaaggtaaatatgacactttgaatgcttcaaaaaaac 1836971  T
Q  107 atagtcagtatatacggtggaatattgatgatggattctctgcggtttgggtttgggcccaattaattgggatcgggattgcctgaatttagggcgcaaa 206  Q
    ||||||||||||||||||||||| |||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1836970 atagtcagtatatacggtggaatgttgatgatggattctctgc------ggtttgggcccaattaattgggatcgggattgcctgaatttagggtgcaaa 1836877  T
Q  207 aggcacctaactttcaaatcttgtgaaccgttagatc 243  Q
    |||||||||||||||||||||||||||||||||||||    
T  1836876 aggcacctaactttcaaatcttgtgaaccgttagatc 1836840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 41384878 - 41385090
Alignment:
Q  13 ttggttgttaatactcgggttgggttcatgatggcaagttagttaagggaaaaagaagaaggtaaatatgacactttgaatgcttcnnnnnnncatagtc 112  Q
    |||||| |||||| || ||||||||||||||||| |||| |||||||||||   |||||||| |||||||||||||||||||||||        ||||||    
T  41384878 ttggttcttaatattcaggttgggttcatgatgg-aagtcagttaagggaa---gaagaaggaaaatatgacactttgaatgcttcagaataaaatagtc 41384973  T
Q  113 agtatatacggtggaat-attgatgatggattctctgcggtttgggtttgggcccaattaattgggatcgggattgcctgaatttagggcgcaaaaggca 211  Q
    |||||||||||||||||  ||||||||||||||||| |      ||||||||||||||||||||||||||| ||| |||||||||         ||||||    
T  41384974 agtatatacggtggaatgtttgatgatggattctctac------ggtttgggcccaattaattgggatcggcattacctgaattt---------aaggca 41385058  T
Q  212 cctaactttcaaatcttgtgaaccgttagatc 243  Q
    ||| ||||||||||| ||||||||||| ||||    
T  41385059 cctcactttcaaatcatgtgaaccgttggatc 41385090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 19984847 - 19984941
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||||||||||  ||||||| ||||| |||| |||||| ||||| ||||| ||||  |||||||||||||||| ||||| ||||    
T  19984847 taggctaaagtgcacttttccccccctaagtttcaaaaacttgcaattttggccccctatgtacaaaa--actacaattttgaccctttaagattta 19984941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 46719941 - 46720008
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||||||||||| ||||||||| |||| ||| ||||||||||||||||| ||||| ||||||||||||    
T  46719941 ggctaaagtgcatttttccccccttaacttttaaaaagttgcgattttggccccctatgtataaaaac 46720008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 28161096 - 28161030
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||  ||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||    
T  28161096 attgacgcggtgcggtatgcgggcgcgacgcgggcgctattacatgacgcggacactaatatattta 28161030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 28263214 - 28263145
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    ||||||||||||||||||||||||  ||| ||| |||| |||||||||||| |||||||||||| |||||    
T  28263214 taggctaaagtgcacttttccccccctaacttttaaaacgttgcgattttggccccccatgtatgaaaac 28263145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 52276302 - 52276396
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||||||||||  ||  ||| |||| |||||||||||| |||||||||||| ||||||  ||||||||| |||| || ||||||    
T  52276302 taggctaaagtgcacttttccccccctatctttcaaaacgttgcgattttggccccccatgtatgaaaaca--acaattttggccccctatgtttta 52276396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 317 - 408
Target Start/End: Complemental strand, 51038893 - 51038804
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaag 408  Q
    ||||||||||||||||||||| || |||| ||| |||||||||| |||||||||||| ||| | ||||  ||||||||||||  ||||||||    
T  51038893 taggctaaagtgcacttttccacccttaacttttaaaaagttgcaattttgaccccctatgaacaaaa--actacaattttggtcccttaag 51038804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 49216247 - 49216339
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||||| |   ||||||| |||||||||| |||||||||||| ||||| ||||  ||||||||| || ||||||||| ||||    
T  49216247 ggctaaagtgcacttttccacgcctaagtttcaaaaagttgcaattttgaccccctatgtacaaaa--actacaattatgtccccttaagattta 49216339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 4101241 - 4101175
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||| | |||||||||||| ||| || |||||||||||||||||| ||||||    
T  4101241 attgacgcggcgcggtatgtgggcgcgacgcgggcgcttttacatgacgcggacactaatatattta 4101175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 48663350 - 48663416
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||||| ||| |||||||| ||| || |||||||||||||||||| ||||||    
T  48663350 attgacgcggcgcggtatgcgggcgtgacgcgggcgcttttacatgacgcggacactaatatattta 48663416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 386
Target Start/End: Complemental strand, 52281651 - 52281581
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||||||||||||||||||||||||  ||  ||| |||| |||||||||||| |||||||||||| |||||    
T  52281651 ttaggctaaagtgcacttttccccccctatctttcaaaacgttgcgattttggccccccatgtatgaaaac 52281581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 313 - 386
Target Start/End: Original strand, 7758396 - 7758469
Alignment:
Q  313 tatttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    ||||||||||||||||||||||| |||| |||| ||| ||||| |||| |||||||||||| | ||| ||||||    
T  7758396 tatttaggctaaagtgcactttttcccccttaactttcaaaaacttgcaattttgaccccctaagtacaaaaac 7758469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 402
Target Start/End: Complemental strand, 19986175 - 19986090
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccc 402  Q
    |||||||||||||||||||||||  |||||||| ||||| |||| |||||| |||| | | | || ||| ||||||||||||||||    
T  19986175 taggctaaagtgcacttttcccctcttaagtttcaaaaacttgcaattttggcccctcctatgtataaaaactacaattttgaccc 19986090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 386
Target Start/End: Original strand, 28262191 - 28262259
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    ||||||||||||||||||||||||  ||| ||| |||| |||||||||||| |||||||||||| |||||    
T  28262191 taggctaaagtgcacttttccccc-ctaactttcaaaacgttgcgattttggccccccatgtatgaaaac 28262259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 29932800 - 29932708
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||||||| ||| ||| ||||| |||| ||||||  |||| | ||| ||||  |||||||||||||||||||||| ||||    
T  29932800 aggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttg-gcccctaagtacaaaa--actacaattttgaccccttaagattta 29932708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 29981954 - 29981862
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||||||| ||| ||| ||||| |||| ||||||  |||| | ||| ||||  |||||||||||||||||||||| ||||    
T  29981954 aggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttg-gcccctaagtacaaaa--actacaattttgaccccttaagattta 29981862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 46721322 - 46721254
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    ||||||||||||||||||| |||  ||| ||| |||||||||||||||| |||||| ||||| ||||||    
T  46721322 aggctaaagtgcacttttctccccctaacttttaaaaagttgcgattttaaccccctatgtacaaaaac 46721254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 54540892 - 54540799
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||||||||| |||| ||| ||||| |||| |||||||||||  | ||| ||||  |||||||||||| |||| |||| ||||    
T  54540892 aggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttgaccccttaagtacaaaa--actacaattttggccccctaagattta 54540799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 413
Target Start/End: Original strand, 8875902 - 8875998
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||| |||||  ||||  ||||| ||||  |||||||||||| |||| |||| ||||    
T  8875902 tttaggctaaagtgcacttttcaccccttaagttcgaaaaagctgcaattttagccccttatgtacaaaa--actacaattttggccccctaagattta 8875998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 373
Target Start/End: Complemental strand, 47615654 - 47615595
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||||||||||||||||||| |||| ||| ||||| |||| |||||| |||||    
T  47615654 atttaggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccc 47615595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 413
Target Start/End: Original strand, 534496 - 534591
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||| ||||| ||| | | ||||| |||| ||||||||| || ||||| ||||  |||||||||||| |||| |||| ||||    
T  534496 ttaggctaaagtgcactttttcccctctaactctcaaaaacttgcaattttgacctcctatgtacaaaa--actacaattttggccccctaagattta 534591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 402
Target Start/End: Complemental strand, 54987103 - 54987027
Alignment:
Q  322 taaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccc 402  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||   |||| ||||||||||  |||| |||||||||||    
T  54987103 taaagtgcacttttccccct--aagtttcaaaaagttgcgattttagtcccctatgtataaaa--actataattttgaccc 54987027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 413
Target Start/End: Original strand, 18442629 - 18442723
Alignment:
Q  318 aggctaaagtgcacttttccccctt-taagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||| |||||   ||| ||| |||| |||||||||||| |||||||||||| |||  |||||||||||| |||| || ||||||    
T  18442629 aggctaaagtgcactttccccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaa--actacaattttggccccctatgtttta 18442723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 386
Target Start/End: Complemental strand, 18456170 - 18456097
Alignment:
Q  314 atttaggctaaagtgcacttttccccctt-taagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||| ||||||||||||||||||||||   ||| ||| |||| |||||||||||| |||||||||||| |||||    
T  18456170 attttggctaaagtgcacttttcccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaac 18456097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 413
Target Start/End: Original strand, 19487703 - 19487797
Alignment:
Q  318 aggctaaagtgcacttttccccctt-taagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||| |||||   ||| ||| |||| |||||||||||| |||||||||||| |||  |||||||||||| |||| || ||||||    
T  19487703 aggctaaagtgcactttccccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaa--actacaattttggccccctatgtttta 19487797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 408
Target Start/End: Complemental strand, 22776915 - 22776826
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaag 408  Q
    ||||||||||||||||||||| ||  ||| ||| | |||||||| |||||| ||||| ||||| ||||  |||||||||||| |||| ||||    
T  22776915 taggctaaagtgcacttttccacccctaactttcagaaagttgcaattttggccccctatgtacaaaa--actacaattttggccccctaag 22776826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 366
Target Start/End: Original strand, 39843054 - 39843098
Alignment:
Q  322 taaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    |||||||||||||| |||| ||||||||||||||||||| |||||    
T  39843054 taaagtgcactttttcccccttaagtttgaaaaagttgcaatttt 39843098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 47614185 - 47614277
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||| ||||| ||| ||| ||||| |||| |||||| ||||| | |||| ||||||  ||||||||| |||| |||| ||||    
T  47614185 ggctaaagtgcactttttcccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaaca--acaattttggccccctaagattta 47614277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 53901487 - 53901439
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgac 369  Q
    ||||||||||||||||||||||  ||||||| |||||||||| ||||||||    
T  53901487 ggctaaagtgcacttttccccc--taagtttaaaaaagttgcaattttgac 53901439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 8338940 - 8338994
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||| |||  || |||| |||| ||||||||||||||||||    
T  8338940 ggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgattttgaccccc 8338994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 403
Target Start/End: Original strand, 12700171 - 12700255
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgacccc 403  Q
    |||||||||||||||||||| |||||  ||| ||| ||||| |||| |||||| ||||| | ||| ||||  |||||||||||||||||    
T  12700171 tttaggctaaagtgcactttcccccc--taactttcaaaaacttgcaattttggccccctaagtacaaaa--actacaattttgacccc 12700255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 373
Target Start/End: Complemental strand, 26633667 - 26633605
Alignment:
Q  311 tgtatttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||  ||||||||| |||  |||||||  ||| ||||||||||||||||||    
T  26633667 tgtatttaggctaaacggcacttttcaccccctaagtttctaaatgttgcgattttgaccccc 26633605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 359
Target Start/End: Complemental strand, 31039295 - 31039253
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttg 359  Q
    |||||||||||||||||||| ||| |||||||| |||||||||    
T  31039295 taggctaaagtgcacttttcaccccttaagttttaaaaagttg 31039253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 40836486 - 40836428
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||| |||| ||||| |||  ||||||| |||| ||||||||||||||||||    
T  40836486 tttaggctaaactgcatttttcgccccctaagttttaaaatgttgcgattttgaccccc 40836428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 46673350 - 46673296
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||| |||||||| ||| ||||||||  ||| ||||||||||||||||||    
T  46673350 ggctaaagtccacttttcgccccttaagttttcaaatgttgcgattttgaccccc 46673296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 47609693 - 47609751
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||| ||||||||||||||  ||| ||| ||||| |||| ||||||||||||    
T  47609693 tttaggctaaaatgcacttttccccccctaactttcaaaaacttgcaattttgaccccc 47609751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 51347266 - 51347316
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    |||| ||||||||||||| ||||  ||||||||||||||||||| ||||||    
T  51347266 taggttaaagtgcactttccccctcttaagtttgaaaaagttgcaattttg 51347316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 363
Target Start/End: Complemental strand, 785039 - 784995
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgat 363  Q
    ||||||||||||||| | |||| |||||||| |||||||||||||    
T  785039 ggctaaagtgcacttgttcccccttaagttttaaaaagttgcgat 784995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 23320380 - 23320420
Alignment:
Q  332 ttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    ||||| ||| |||||||| ||||||||||||||||||||||    
T  23320380 ttttcaccccttaagttttaaaaagttgcgattttgacccc 23320420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 413
Target Start/End: Original strand, 24516459 - 24516552
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||| ||||||||||||| ||||  ||| ||| ||||| |||| |||||| | ||| | ||||||||  |||||||||||| ||||||||| ||||    
T  24516459 aggccaaagtgcactttttcccccctaactttaaaaaacttgcaattttggcaccctaagtataaaa--actacaattttggccccttaagattta 24516552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 25179576 - 25179632
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||| | |||||||| |||| ||||||| |||| |||||||||||| |||||    
T  25179576 taggctaaacttcacttttcgccctctaagttttaaaatgttgcgattttggccccc 25179632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 33279585 - 33279633
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    |||||||| |||||||||| ||||||||||||  ||| |||||||||||    
T  33279585 aggctaaactgcacttttcgccctttaagttttgaaatgttgcgatttt 33279633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 40630685 - 40630629
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||  |||  |||||||| ||||||||| |||||| |||||    
T  40630685 taggctaaagtgcactttttaccccctaagtttgcaaaagttgcaattttggccccc 40630629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 47610683 - 47610627
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||| |||||||||||||||||||| ||| ||| ||||| |||| |||||| |||||    
T  47610683 taggttaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccc 47610627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 51037536 - 51037587
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccc 371  Q
    |||||||||||||||||| ||| |||| ||| |||||||||| ||||||||||    
T  51037536 ggctaaagtgcacttttctccc-ttaactttcaaaaagttgcaattttgaccc 51037587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 413
Target Start/End: Original strand, 54539754 - 54539847
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||| || |||| ||| ||||| |||| ||||| ||||||  |  ||| ||| ||||||||||||| ||| |||| ||||    
T  54539754 aggctaaagtgcacttttccacccttaactttcaaaaacttgcaattttaaccccc--taaatacaaaaactacaattttgatcccctaagattta 54539847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 1e-94; HSPs: 33)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 18640359 - 18640559
Alignment:
Q  7 aatcagttggttgttaatactcgggttgggttcatgatggcaagttagttaagggaaaaagaagaaggtaaatatgacactttgaatgcttcnnnnnnnc 106  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |    
T  18640359 aatcagttggttgttaatactcaggttgggttcatgatggcaagttagttaagggaaaaagaagaaggtaaatatgacactttgaatgcttcaaaaaaac 18640458  T
Q  107 atagtcagtatatacggtggaatattgatgatggattctctgcggtttgggtttgggcccaattaattgggatcgggattgcctgaatttagggcgcaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18640459 atagtcagtatatacggtggaatattgatgatggattctctgcggtttgggtttgggcccaattaattgggatcgggattgcctgaatttagggcgcaaa 18640558  T
Q  207 a 207  Q
    |    
T  18640559 a 18640559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 6807648 - 6807582
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||    
T  6807648 attgacgcggtgcggtatgcgggcgcgacgcgggagctatttcatgacgcggacagtaatatattta 6807582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 3333128 - 3333046
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccc 402  Q
    |||||||| ||||||||||||| | ||||||||||||||||||||||||| ||||| ||||| ||||  ||||||||||| ||||    
T  3333128 aggctaaattgcacttttccccttctaagtttgaaaaagttgcgattttggccccctatgtacaaaa--actacaattttaaccc 3333046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 6842388 - 6842325
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgt 378  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| |||||| ||||| ||||    
T  6842388 tttaggctaaagtgcacttttccccctctaagtttcaaaaagttgcaattttggccccctatgt 6842325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 5320438 - 5320372
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||| | |||||||||||| |||||| |||||||||||||||||| ||||||    
T  5320438 attgacgcggcgcggtatgtgggcgcgacgcgggcgctattacatgacgcggacactaatatattta 5320372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 16704604 - 16704506
Alignment:
Q  313 tatttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttt 412  Q
    ||||||||||||||||||||||||| || |||| ||| ||||| |||| |||||||||||| | ||| ||||  ||||||||||||| || ||||| |||    
T  16704604 tatttaggctaaagtgcacttttcctcccttaactttcaaaaacttgcaattttgaccccctaagtacaaaa--actacaattttgatcctttaagattt 16704507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 27437826 - 27437920
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||| ||| |||| ||| |||||||||| |||||| ||||| ||  ||||||  ||||||||||||||||| |||| ||||    
T  27437826 taggctaaagtgcacttttctccccttaactttaaaaaagttgcaattttggccccctataaataaaa--actacaattttgaccccctaagattta 27437920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 16415637 - 16415581
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    ||||||||||||||||||||| ||| |||| ||| ||||||||||||||||||||||    
T  16415637 ttaggctaaagtgcacttttcaccccttaaattttaaaaagttgcgattttgacccc 16415581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 20973401 - 20973353
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||    
T  20973401 aggctaaagtgcacttttccccctttaagtttcaataagttgcgatttt 20973353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 377
Target Start/End: Original strand, 13345549 - 13345609
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatg 377  Q
    |||||||||||| |||||||||||||| ||||||  |||||||||||||||||||| |||||    
T  13345549 ttaggctaaagttcacttttccccctt-aagtttccaaaagttgcgattttgaccctccatg 13345609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 366
Target Start/End: Complemental strand, 3333628 - 3333581
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    |||||||||||| ||||  |||||||||||||||||||||||||||||    
T  3333628 ggctaaagtgcatttttatccctttaagtttgaaaaagttgcgatttt 3333581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 373
Target Start/End: Original strand, 3721611 - 3721666
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||||| ||| ||| ||||| |||| ||||||||||||    
T  3721611 aggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttgaccccc 3721666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 8821868 - 8821927
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||||||||| ||| ||| ||||| |||| |||||| |||||    
T  8821868 atttaggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccc 8821927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 8822894 - 8822840
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||| |||||| ||| ||||| |||| ||||||||||||    
T  8822894 ggctaaagtgcacttttccctctttaactttcaaaaacttgcaattttgaccccc 8822840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 27448016 - 27447966
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    |||||||||||||||||||||||| |||||||| |||||||| | ||||||    
T  27448016 taggctaaagtgcacttttccccccttaagttttaaaaagttacaattttg 27447966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 8659262 - 8659319
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||||||| ||| ||| ||||| |||| |||||| |||||    
T  8659262 ttaggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccc 8659319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 367
Target Start/End: Original strand, 26239952 - 26240005
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||||||||| ||||||||| ||| |||||||| ||||||||| |||||||    
T  26239952 atttaggctaaagagcacttttcaccccttaagttttaaaaagttgtgattttg 26240005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 7316397 - 7316341
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||||| |||| ||| ||||| |||| |||||| |||||    
T  7316397 taggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccc 7316341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 403
Target Start/End: Original strand, 10784590 - 10784675
Alignment:
Q  317 taggctaaagtgcacttttccc-cctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgacccc 403  Q
    |||||||||||||||||||||| || |||| ||| ||||| |||| ||||| |||||| | ||||||||  |||||||||||| ||||    
T  10784590 taggctaaagtgcacttttccctcccttaacttttaaaaacttgcaattttaaccccctaagtataaaa--actacaattttggcccc 10784675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 22968460 - 22968404
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    |||||||||||| |||||||| ||| |||||||| |||| |||||||||||| ||||    
T  22968460 ttaggctaaagttcacttttcgccccttaagtttcaaaatgttgcgattttggcccc 22968404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 23819933 - 23819989
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    |||||||||||| |||||||| ||| |||||||| |||| |||||||||||| ||||    
T  23819933 ttaggctaaagttcacttttcgccccttaagtttcaaaatgttgcgattttggcccc 23819989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 3333149 - 3333215
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||||||||| |||||||||| | ||||||||||||| |||| | |||||||||| ||| ||||||||    
T  3333149 ggctaaagtgaacttttcccc-tataagtttgaaaaaattgcaaatttgaccccctatgaataaaaac 3333215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 7314880 - 7314971
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||||||||| ||| ||| ||||| |||| ||||||  |||| | |||| ||||||  |||||||||||||| |||| ||||    
T  7314880 ggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttg-gcccctaagtatcaaaaca--acaattttgaccccctaagattta 7314971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 372
Target Start/End: Complemental strand, 26717183 - 26717132
Alignment:
Q  321 ctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    |||||||||||||||||||| |||||||| | ||| |||| |||||||||||    
T  26717183 ctaaagtgcacttttccccccttaagtttcagaaacttgcaattttgacccc 26717132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 367
Target Start/End: Original strand, 29473082 - 29473125
Alignment:
Q  324 aagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||    
T  29473082 aagtgcacttttccccccttaagttttaaaaagttgcaattttg 29473125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 367
Target Start/End: Complemental strand, 15907978 - 15907924
Alignment:
Q  313 tatttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||| ||||||||||||| ||| | || |||||||| |||||||||||||||||    
T  15907978 tattttggctaaagtgcaccttttctccgttaagtttcaaaaagttgcgattttg 15907924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 18749432 - 18749378
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||| | |||||||| |||| ||||||| |||| ||||||||||||||||||    
T  18749432 ggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttgaccccc 18749378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 6840191 - 6840245
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    ||||||| ||||||||||| ||||  |||||||| ||||||||||||||||| ||||    
T  6840191 ttaggctgaagtgcactttccccc--ttaagtttcaaaaagttgcgattttggcccc 6840245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 24051006 - 24051063
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||| | |||||||| |||| ||||||| |||| |||||||||||| |||||    
T  24051006 ttaggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccc 24051063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 1829701 - 1829612
Alignment:
Q  322 taaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||  |||  ||| ||| ||||| |||| |||||||||||| | ||||||||  |||||||||||| |||| |||| ||||    
T  1829701 taaagtgcacttttttccccctaacttttaaaaacttgcaattttgaccccctaagtataaaa--actacaattttggccccctaagattta 1829612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 3722612 - 3722556
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccc 371  Q
    |||||||||||||||||||||||| |  ||| ||| ||||| |||| ||||||||||    
T  3722612 tttaggctaaagtgcacttttccctccctaactttcaaaaacttgcaattttgaccc 3722556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 8412754 - 8412806
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||||||||| |||||| | ||| |||||||| |||| ||||||||||||    
T  8412754 tttaggctaaagtccactttccgccccttaagtttcaaaatgttgcgattttg 8412806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 370
Target Start/End: Complemental strand, 34834229 - 34834177
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacc 370  Q
    ||||||||||||||||||| ||| ||| |||| ||||  ||||||||||||||    
T  34834229 aggctaaagtgcacttttcgccccttatgttttaaaatattgcgattttgacc 34834177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 35448994 - 35449060
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  35448994 attgacgcggcacggtatgcgggcgcgacgcgggagctatttcatgacgcggacactaatatattta 35449060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 404
Target Start/End: Complemental strand, 42982762 - 42982675
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgacccct 404  Q
    ||||||||||||||||||||||| ||||||||||| |||||||||  |||||| |||||  |||| | ||| ||||||||||||||||||    
T  42982762 tttaggctaaagtgcacttttccacctttaagttttaaaaagttgtaattttggccccc--tgtaaacaaaaactacaattttgacccct 42982675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 43265326 - 43265392
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||||||||||||| |||||||||||| ||| || |||||||||||||||||| ||||||    
T  43265326 attgacgcggcacggtatgcgggcgcgacgcgggcgcttttacatgacgcggacactaatatattta 43265392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 774080 - 774144
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtatt 316  Q
    ||||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||||| ||||    
T  774080 attgacgcggcgcggtatgcgggcgcgacgcgggcgctattacatgacgcggacactaatatatt 774144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 22220388 - 22220480
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||||||||| ||| ||| ||| | |||| |||||||||||| ||||||||||  |||||||||||| |||| |||| ||||    
T  22220388 ggctaaagtgcacttttccccctctaactttaaaatacttgcaattttgaccccctatgtataaaa--actacaattttggccccctaagattta 22220480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 316 - 386
Target Start/End: Original strand, 32968453 - 32968523
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||||||||||||||||||||||||  ||| ||| |||| |||||||||||| |||||||||||| |||||    
T  32968453 ttaggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaac 32968523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 38980146 - 38980078
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||||||||||||||||||||||  ||| ||| |||| |||||||||||| |||||||||||| |||||    
T  38980146 aggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaac 38980078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 39011243 - 39011175
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||||||||||||||||||||||  ||| ||| |||| |||||||||||| |||||||||||| |||||    
T  39011243 aggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaac 39011175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 38974795 - 38974862
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    ||||||||||||||||||||||  ||| ||| |||| |||||||||||| |||||||||||| |||||    
T  38974795 ggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaac 38974862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 39005893 - 39005960
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    ||||||||||||||||||||||  ||| ||| |||| |||||||||||| |||||||||||| |||||    
T  39005893 ggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaac 39005960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 385
Target Start/End: Original strand, 36249552 - 36249618
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaa 385  Q
    |||||||||||||||||||||| |||||||| |||||||||| |||||| || || ||| |||||||    
T  36249552 ggctaaagtgcacttttccccccttaagtttcaaaaagttgcaattttggcctcctatgaataaaaa 36249618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 36337678 - 36337621
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    |||||||| || |||||||||||| |||||||||| |||||||||| |||||||||||    
T  36337678 tttaggcttaaatgcacttttccctctttaagtttcaaaaagttgcaattttgacccc 36337621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 413
Target Start/End: Original strand, 12351920 - 12352013
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||| ||| ||||| |||| ||| ||||| |||| |||||||||||| | ||| ||||  ||||||||||||||||| |||| ||||    
T  12351920 aggctaaagtgcattttcccccccttaactttcaaaaatttgcaattttgaccccctaagtacaaaa--actacaattttgaccccctaagattta 12352013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 22221466 - 22221373
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||| ||  ||| ||| ||||| |||| |||||||||||| | |||| |||  ||||||||||||||||| |||| ||||    
T  22221466 aggctaaagtgcacttttccacccctaactttcaaaaacttgcaattttgaccccctaagtattaaa--actacaattttgaccccctaagattta 22221373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 22227808 - 22227715
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||| ||  ||| ||| ||||| |||| |||||||||||| | |||| |||  ||||||||||||||||| |||| ||||    
T  22227808 aggctaaagtgcacttttccacccctaactttcaaaaacttgcaattttgaccccctaagtattaaa--actacaattttgaccccctaagattta 22227715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 366
Target Start/End: Complemental strand, 30927734 - 30927682
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    |||||| |||||||| | |||||||||||||||||| ||||||||||||||||    
T  30927734 atttagactaaagtgtatttttccccctttaagtttaaaaaagttgcgatttt 30927682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 10006344 - 10006436
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||||||||| ||| ||| ||||| |||| |||||| ||||| | |||| ||||||  ||||||||| |||| |||| ||||    
T  10006344 ggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaaca--acaattttggccccctaagattta 10006436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 319 - 386
Target Start/End: Complemental strand, 32974037 - 32973970
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    ||||||||||||||||| ||||  ||| ||| |||| |||||||||||| |||||||||||| |||||    
T  32974037 ggctaaagtgcactttttcccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaac 32973970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 10007866 - 10007797
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||||||||||||||||||||||| |||| ||| ||||| |||| |||||| ||||| | ||||| ||||    
T  10007866 taggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtatagaaac 10007797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 21930107 - 21930051
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||| | |||||||| |||| ||||||| |||| ||||||||||||||||||    
T  21930107 taggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttgaccccc 21930051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 386
Target Start/End: Original strand, 29043393 - 29043465
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||||| ||||||| ||||||||| || ||||  || ||||||| ||||||||||||||| ||||| ||||||    
T  29043393 atttagcctaaagttcacttttcctcccttaaccttcaaaaagtcgcgattttgaccccctatgtacaaaaac 29043465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 315 - 370
Target Start/End: Complemental strand, 7117421 - 7117366
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacc 370  Q
    ||||||||||| ||||||| || ||  |||||||| ||||||||||||||||||||    
T  7117421 tttaggctaaactgcacttatcaccacttaagtttcaaaaagttgcgattttgacc 7117366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 367
Target Start/End: Complemental strand, 8389792 - 8389742
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    |||| ||||||||||||||||||  |||||||| |||||||||| ||||||    
T  8389792 taggttaaagtgcacttttcccctcttaagtttcaaaaagttgcaattttg 8389742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 10290497 - 10290431
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||| ||| ||||||||| |||||||||||| || ||| ||||||||  |||||||| ||||||    
T  10290497 attgacgtggcgcggtatgcgggcgcgacgcgggcgcgattacatgacgcatacactaatatattta 10290431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 11282006 - 11282100
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||| |||||||||||||| |||| |||| ||| |||||||||| |||||| |||||  | |||| ||| |  |||||||||||||| |||| ||||    
T  11282006 taggttaaagtgcactttttcccccttaacttttaaaaagttgcaattttggccccc--tatatacaaaaatgacaattttgaccccctaagattta 11282100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 19392873 - 19392816
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||| | |||||||| |||| ||||||| |||| |||||||||||| |||||    
T  19392873 ttaggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccc 19392816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 368
Target Start/End: Original strand, 30568883 - 30568935
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttga 368  Q
    ||||||||||||||||| ||||||||| ||||||| |||||||| | |||||||    
T  30568883 tttaggctaaagtgcac-tttccccctctaagtttcaaaaagttacaattttga 30568935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 3380199 - 3380247
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||| |||| ||||| |||||||||||| |||| ||||||||||||    
T  3380199 ggctaaactgcatttttcaccctttaagtttcaaaatgttgcgattttg 3380247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 11456632 - 11456692
Alignment:
Q  313 tatttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||||| |||  ||| ||| ||||| |||| |||||| |||||    
T  11456632 tatttaggctaaagtgcacttttctccccctaattttcaaaaatttgcaattttggccccc 11456692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 7517 - 7424
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||| ||||||| |||||||||||||||| |||||||||||||| ||||| | ||  ||||||||||||||||| |||| ||||    
T  7517 aggctaaagtgcacttgtccccctctaagtttgaaaaagttacgattttgaccccctatgtacagaa--actacaattttgaccccctaagattta 7424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 7538 - 7604
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||||||||||||||| |||||| |||||||||||||||||  | |||||||||| ||| | ||||||    
T  7538 ggctaaagtgcacttt-ccccctataagtttgaaaaagttgtaaatttgaccccctatgaacaaaaac 7604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 318 - 413
Target Start/End: Original strand, 21835040 - 21835132
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| ||||| ||||  ||||||||||||||||| |||| ||||    
T  21835040 aggctaaagtgcacttt-ccccctctaagtttgaaaaagttgtgattttgaccccctatgtacaaaa--actacaattttgaccccctaagattta 21835132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 38476785 - 38476727
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||| ||| |||||||| ||||||||| |||||||||||||    
T  38476785 tttaggctaaagtgcacttttcaccccttaagttttaaaaagttgtgattttgaccccc 38476727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 413
Target Start/End: Complemental strand, 33160389 - 33160295
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||||||| |||| ||| ||||| |||| |||||  ||||| | ||||| ||  |||||||||||||||||||||| ||||    
T  33160389 taggctaaagtgcacttttccccccttaattttcaaaaacttgcaattttagccccctaagtatagaa--actacaattttgaccccttaagattta 33160295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 413
Target Start/End: Original strand, 25523065 - 25523161
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||||||||| |||| ||| ||||| |||| |||||  ||||| | ||| ||||  ||||||||||||||||| |||| ||||    
T  25523065 tttaggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttagccccctaagtacaaaa--actacaattttgaccccctaagattta 25523161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 31576664 - 31576609
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||||| |||||    
T  31576664 aggctaaagtgcacttttcaccccttaagttttaaaaagttgcgattttgtccccc 31576609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 314 - 372
Target Start/End: Original strand, 20653815 - 20653873
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    |||||||||||||||||||||||  |  |||||||| ||||||||||||||||||||||    
T  20653815 atttaggctaaagtgcacttttcatctcttaagttttaaaaagttgcgattttgacccc 20653873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 41663826 - 41663772
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||||||| |||||    
T  41663826 ggctaaagtgcatttttcaccctttaagttttaaaaagttgcgattttggccccc 41663772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 16650958 - 16650889
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    ||||||||||||||||||||| || |||| ||| ||||| |||| |||||||||||| | ||||||||||    
T  16650958 taggctaaagtgcacttttccacccttaacttttaaaaacttgcaattttgaccccctaagtataaaaac 16650889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 318
Target Start/End: Original strand, 25739691 - 25739751
Alignment:
Q  258 gcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||| ||||||||| |||||||||||| |||||| |||||||| ||||||||| ||||||    
T  25739691 gcggcgcggtatgcgggcgcgacgcgggcgctattacatgacgctgacactaatatattta 25739751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 2373143 - 2373194
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    ||||| |||||||||||||||| ||| |||||||| ||||||||||||||||    
T  2373143 tttagactaaagtgcacttttcaccccttaagttttaaaaagttgcgatttt 2373194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 372
Target Start/End: Complemental strand, 23040342 - 23040287
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    ||||||||||| ||||||||  || |||||||| ||||||||||||||||||||||    
T  23040342 taggctaaagtacacttttcatcccttaagttttaaaaagttgcgattttgacccc 23040287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 404
Target Start/End: Complemental strand, 22940723 - 22940640
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgacccct 404  Q
    |||||||||||||||||||||| |||| ||| ||||| |||| |||||| ||||| | ||| ||||  | ||||||||||||||||    
T  22940723 ggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacaaaa--attacaattttgacccct 22940640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 33672843 - 33672777
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||||| |||||||||||   |||||  ||||||||||||||||| ||||||    
T  33672843 attgacgcggcgcggtatgcgggcgcgacgcggacactattatatgacgcggacactaatatattta 33672777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 402
Target Start/End: Original strand, 24332916 - 24332994
Alignment:
Q  322 taaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccc 402  Q
    |||||||||||||| |||| |||||||| ||||| |||| |||||| ||||  ||||| ||||  ||||||||||||||||    
T  24332916 taaagtgcactttttcccccttaagtttcaaaaacttgcaattttggccccttatgtacaaaa--actacaattttgaccc 24332994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 25055410 - 25055504
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||||||||||| ||| ||| ||    |||| ||||||| |||| ||||||||||  |||||||||||| |||| |||| ||||    
T  25055410 taggctaaagtgcacttttccccctctaactttaaacttcttgcaattttgatcccctatgtataaaa--actacaattttggccccctaagattta 25055504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 369
Target Start/End: Original strand, 15885132 - 15885180
Alignment:
Q  321 ctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgac 369  Q
    ||||| |||||||||| ||| |||||||| |||||||||||||||||||    
T  15885132 ctaaattgcacttttcaccccttaagtttcaaaaagttgcgattttgac 15885180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 40255775 - 40255719
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||||  |||| ||| ||||| |||| ||||||||||||    
T  40255775 taggctaaagtgcacttttcccctcttaatttttaaaaacttgcaattttgaccccc 40255719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 275 - 318
Target Start/End: Original strand, 16929404 - 16929447
Alignment:
Q  275 cgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    |||| |||||||||||||||||||| ||||||||||| ||||||    
T  16929404 cgcggcgcgggagctatttcatgacacggacactaatatattta 16929447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 366
Target Start/End: Original strand, 21834856 - 21834903
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    |||||||||||||||||  |||||||| ||||||||| ||||||||||    
T  21834856 ggctaaagtgcacttttatccctttaaatttgaaaaaattgcgatttt 21834903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 370
Target Start/End: Complemental strand, 21835019 - 21834969
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacc 370  Q
    ||||||||||||||||||||| | |||||||||||||||||| | |||||||    
T  21835019 ggctaaagtgcacttttcccc-tataagtttgaaaaagttgcaaatttgacc 21834969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 413
Target Start/End: Complemental strand, 25056482 - 25056390
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||||| |   ||| ||| ||||| |||| |||||||||||| | |||| |||  ||||||||||||||||| |||| ||||    
T  25056482 ggctaaagtgcacttttccactcctaactttcaaaaacttgcaattttgaccccctaagtattaaa--actacaattttgaccccctaagattta 25056390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 18695004 - 18695058
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||| | |||||||| |||| ||||||| |||| ||||||||||||||||||    
T  18695004 ggctaaacttcacttttcgccctctaagttttaaaatgttgcgattttgaccccc 18695058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 35228889 - 35228823
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||| ||||| ||||||||  | |||||| ||| | ||||||||||||||||||||||| ||||||    
T  35228889 attgatgcggcgcggtatgcaggtgcgacgtgggcgatatttcatgacgcggacactaatatattta 35228823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 384
Target Start/End: Original strand, 42195137 - 42195197
Alignment:
Q  322 taaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaa 384  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||| ||||| ||||| ||||    
T  42195137 taaagtgcacttttccccctt-aacttt-aaaaagttgcgattttggccccctatgtacaaaa 42195197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 367
Target Start/End: Complemental strand, 2373454 - 2373401
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    |||||||||||| ||||||||||  ||  ||||||| |||||||||||||||||    
T  2373454 atttaggctaaactgcacttttcaacccctaagtttcaaaaagttgcgattttg 2373401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 5778939 - 5778890
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    ||||||||||||||||||||||||| ||| ||| ||||| |||| |||||    
T  5778939 taggctaaagtgcacttttccccctctaactttcaaaaacttgcaatttt 5778890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 387
Target Start/End: Original strand, 18485137 - 18485206
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaaca 387  Q
    |||||||||||||||||| ||||| ||| ||| ||||| |||| |||||| ||||| | |||| ||||||    
T  18485137 aggctaaagtgcactttttcccctctaactttaaaaaacttgcaattttggccccctaagtatcaaaaca 18485206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 386
Target Start/End: Complemental strand, 18487005 - 18486936
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||||||||||||||||| ||||| |||| ||| ||||| |||| |||||| ||||| | ||||| ||||    
T  18487005 taggctaaagtgcactttcccccccttaactttcaaaaacttgcaattttggccccctaagtatagaaac 18486936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 20216870 - 20216817
Alignment:
Q  313 tatttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    |||||||| ||||||||||||||||||| |||| ||| ||||| |||| |||||    
T  20216870 tatttaggttaaagtgcacttttccccccttaattttcaaaaacttgcaatttt 20216817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 372
Target Start/End: Original strand, 28538672 - 28538729
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    ||||||||||||||||||||||| ||  ||| ||| ||||| |||| |||||||||||    
T  28538672 tttaggctaaagtgcacttttccacccgtaactttcaaaaacttgcaattttgacccc 28538729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 372
Target Start/End: Complemental strand, 40428941 - 40428888
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    ||||||| | |||||||| |||| ||||||| |||| |||||||||||||||||    
T  40428941 ggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttgacccc 40428888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 373
Target Start/End: Original strand, 5777896 - 5777953
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||||||||||||| |||||  ||| ||| ||||| |||| ||||||||||||    
T  5777896 atttaggctaaagtgcactttcccccc--taactttcaaaaacttgcaattttgaccccc 5777953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 16307782 - 16307734
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    ||||||| || |||||||| |||||||||||| |||| |||||||||||    
T  16307782 aggctaaggtccacttttcgccctttaagttttaaaatgttgcgatttt 16307734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 35302217 - 35302165
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccc 371  Q
    ||||||| |||| ||||| ||| |||||||| |||| ||||||||||||||||    
T  35302217 ggctaaactgcatttttctccccttaagtttcaaaatgttgcgattttgaccc 35302165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 51685870 - 51685774
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||| ||| | ||||| ||||  ||||||||||||||||| |||| ||||    
T  51685870 tttaggctaaagtgcacttttccccctctaactttcaaaaagttgcgattttggccctctatgtacaaaa--actacaattttgaccccctaagattta 51685774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 317 - 403
Target Start/End: Complemental strand, 35067105 - 35067021
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgacccc 403  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||| | ||||  |||||||||||| ||||    
T  35067105 taggctaaagtgcacttttccccccttaagtttcaaaaagttgcgattttggccccctatgaacaaaa--actacaattttggcccc 35067021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 319 - 413
Target Start/End: Original strand, 51684366 - 51684458
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||||| |||| ||| |||||||||| |||||| ||||| ||||||||||  |||||||||||| |||| |||| ||||    
T  51684366 ggctaaagtgcacttttccccccttaacttttaaaaagttgcaattttggccccctatgtataaaa--actacaattttggccccctaagattta 51684458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 47974447 - 47974513
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||    
T  47974447 attgacgcggcgcggtatgcgggcgcgacgcgggcgctattacatgacgcggacactaatatattta 47974513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 413
Target Start/End: Original strand, 24422796 - 24422892
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||||||| |||| |||| ||| ||||| |||| |||||||||||| | ||| ||||  |||||||||||| |||| |||| ||||    
T  24422796 tttaggctaaagtgcacttttacccccttaactttcaaaaacttgcaattttgaccccctaagtacaaaa--actacaattttggccccctaagattta 24422892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 314 - 386
Target Start/End: Complemental strand, 35595299 - 35595226
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagtt-gcgattttgaccccccatgtataaaaac 386  Q
    ||||||||||||||| |||||||||||| ||| ||| ||||| || || |||||||||||| ||||||||||||    
T  35595299 atttaggctaaagtgtacttttccccctctaactttaaaaaacttagcaattttgaccccctatgtataaaaac 35595226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 317 - 385
Target Start/End: Complemental strand, 12390084 - 12390016
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaa 385  Q
    |||||||||||||| ||||||| | |||| ||| |||||||||||||||||| |||| ||||| |||||    
T  12390084 taggctaaagtgcatttttccctccttaactttcaaaaagttgcgattttgatcccctatgtacaaaaa 12390016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 373
Target Start/End: Complemental strand, 24196627 - 24196511
Alignment:
Q  258 gcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattt-aggctaaagtgcacttttccccctttaagtttgaaaaag 356  Q
    ||||| ||||||||| ||||||||  || | |||||||||||||  |||||||| ||||| |||||||| |||||||||| ||   || |||| |||| |    
T  24196627 gcggcgcggtatgcgggcgcgacgttggcgttatttcatgacgcatacactaatatatttaaggctaaactgcacttttcgcctcctatgttttaaaatg 24196528  T
Q  357 ttgcgattttgaccccc 373  Q
    ||||||||||| |||||    
T  24196527 ttgcgattttggccccc 24196511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 413
Target Start/End: Complemental strand, 45157310 - 45157218
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||| ||||| | |||||| ||||| |||| |||||| ||||| ||||| ||||||  |||||||||||||| ||||| ||||    
T  45157310 aggctaaagtgcactttccccccct-aagtttcaaaaacttgcaattttggccccctatgtacaaaaac--tacaattttgaccctttaagattta 45157218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 315 - 413
Target Start/End: Complemental strand, 43060111 - 43060015
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||| ||||| |||||| ||| ||| ||||| |||  |||||||||||  | ||| ||||  |||||||||||||||||||||| ||||    
T  43060111 tttaggctaaagtgtactttaccccctctaactttcaaaaatttgaaattttgaccccttaagtacaaaa--actacaattttgaccccttaagattta 43060015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 126276 - 126210
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||||| || ||||||||   ||||| |||||||||||||||||| ||||||    
T  126276 attgacgcggcgcggtatgcgggcacgacgcggacactattacatgacgcggacactaatatattta 126210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 368
Target Start/End: Complemental strand, 2260683 - 2260629
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttga 368  Q
    ||||| |||||||||||||||||  || |||||||| ||||||||||||||||||    
T  2260683 atttaagctaaagtgcacttttcatcccttaagttttaaaaagttgcgattttga 2260629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 24766448 - 24766382
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||||| |||  ||||||| ||| || |||||||||||||||||| ||||||    
T  24766448 attgacgcggcgcggtatgcgggcgaaacgcgggcgcttttacatgacgcggacactaatatattta 24766382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 11436041 - 11436090
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    |||||||||||||||||||||||||||| ||| ||||| |||| ||||||    
T  11436041 aggctaaagtgcacttttccccctttaactttcaaaaacttgcaattttg 11436090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 402
Target Start/End: Complemental strand, 39153214 - 39153136
Alignment:
Q  322 taaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccc 402  Q
    |||||||||||||| |||| |||||||| ||||| |||| |||||| ||||  ||||| ||||  ||||||||||||||||    
T  39153214 taaagtgcactttttcccccttaagtttcaaaaacttgcaattttggccccttatgtacaaaa--actacaattttgaccc 39153136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 319 - 386
Target Start/End: Complemental strand, 39222575 - 39222507
Alignment:
Q  319 ggctaaagtgcactttt-ccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    ||||||||||||||||| |||||||||| ||| ||||| |||| |||||| ||||| | ||||||||||    
T  39222575 ggctaaagtgcacttttaccccctttaactttcaaaaacttgcaattttggccccctaagtataaaaac 39222507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 46432526 - 46432466
Alignment:
Q  313 tatttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||| ||||||||| |||||||| ||| |||||||| |||| |||||||||||| |||||    
T  46432526 tattttggctaaagtccacttttcgccccttaagtttcaaaatgttgcgattttggccccc 46432466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 367
Target Start/End: Original strand, 11190382 - 11190433
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||||||||||||||||| ||| |||| ||| |||||||||| ||||||    
T  11190382 ttaggctaaagtgcacttttcaccccttaaattttaaaaagttgcaattttg 11190433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 367
Target Start/End: Complemental strand, 23980570 - 23980519
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    |||||||||||||||||||||||||| ||| ||| ||||| |||| ||||||    
T  23980570 ttaggctaaagtgcacttttccccctctaactttaaaaaacttgcaattttg 23980519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 373
Target Start/End: Original strand, 52827346 - 52827401
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||||  ||| ||| ||||| |||| ||||||||||||    
T  52827346 aggctaaagtgcacttttccccccctaactttcaaaaacttgcaattttgaccccc 52827401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Original strand, 29182001 - 29182055
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||| ||||||| |||||||||||| |||||||||  |||||| |||||    
T  29182001 ggctaaagtgtacttttcaccctttaagtttcaaaaagttgtaattttggccccc 29182055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 3170327 - 3170364
Alignment:
Q  281 gcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  3170327 gcgggcgctatttcatgacgcggacactaatatattta 3170364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 8340838 - 8340875
Alignment:
Q  281 gcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  8340838 gcgggcgctattacatgacgcggacactaatgtattta 8340875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 21945707 - 21945755
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||||||| |||||||||| ||||||||| |||||||||| ||||||    
T  21945707 aggctaaagtgtacttttcccc-tttaagttttaaaaagttgcaattttg 21945755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 398
Target Start/End: Original strand, 52274967 - 52275045
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttg 398  Q
    |||||||||||||||||| ||||  ||| ||| ||||| |||| |||||||||||| | ||| ||||  ||||||||||||    
T  52274967 aggctaaagtgcacttttacccccctaactttcaaaaacttgcaattttgaccccctaagtacaaaa--actacaattttg 52275045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 367
Target Start/End: Original strand, 2260378 - 2260426
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||||||||||||||  || |||||||| |||| ||||||||||||    
T  2260378 ggctaaagtgcacttttcgacccttaagttttaaaatgttgcgattttg 2260426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 11437304 - 11437252
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||||||||||||||||| |||| |||| ||| ||||| |||| ||||||    
T  11437304 tttaggctaaagtgcactttttcccccttaactttcaaaaacttgcaattttg 11437252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 52828175 - 52828123
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    |||||| |||||||||||||||||||| ||| ||| ||||| |||| ||||||    
T  52828175 tttaggttaaagtgcacttttccccctctaattttcaaaaacttgcaattttg 52828123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 83881 - 83815
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||    
T  83881 attgacgcggcgcggtatgcgggcgcgacgcgggcgctattacatgacgcggacactaatatattta 83815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 13763373 - 13763307
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||    
T  13763373 attgacgcggcgcggtatgcgggcgcgacgcgggtgctattacatgacgcggacactaatatattta 13763307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 398
Target Start/End: Original strand, 3927665 - 3927743
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttg 398  Q
    |||||||||||||||||||||||| ||| ||| |||| |||||||||||| |||||||||||| |||  ||||||||||||    
T  3927665 aggctaaagtgcacttttccccctctaacttttaaaatgttgcgattttggccccccatgtatgaaa--actacaattttg 3927743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 413
Target Start/End: Complemental strand, 31601092 - 31600994
Alignment:
Q  313 tatttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttt 412  Q
    ||||| ||||||||||||||||| ||||| ||| ||| ||||| |||| |||||||||||| | ||| ||||  |||||||||||||||||||||| |||    
T  31601092 tattttggctaaagtgcactttttcccctctaacttttaaaaacttgcaattttgaccccctaagtacaaaa--actacaattttgaccccttaagattt 31600995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 403
Target Start/End: Complemental strand, 50909774 - 50909692
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgacccc 403  Q
    ||||||||||||||||| || |  ||||||| ||||||||||||||||||| ||| ||||||||||  |||||||||||||||||    
T  50909774 ggctaaagtgcactttttccaccctaagttttaaaaagttgcgattttgactccctatgtataaaa--actacaattttgacccc 50909692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 319 - 403
Target Start/End: Original strand, 1834119 - 1834201
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgacccc 403  Q
    ||||||||||||||||||||||| ||| ||| ||||| || | |||||||||||| ||||||||||  |||||||||||| ||||    
T  1834119 ggctaaagtgcacttttccccctctaactttaaaaaacttacaattttgaccccctatgtataaaa--actacaattttggcccc 1834201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 386
Target Start/End: Original strand, 1963192 - 1963263
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||||||||||||||||||||||||| |||| ||| |||||||||| |||||| || || ||||| ||||||    
T  1963192 tttaggctaaagtgcacttttccccccttaactttcaaaaagttgcaattttggcctcctatgtacaaaaac 1963263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 413
Target Start/End: Complemental strand, 26421725 - 26421631
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||| ||||| ||| ||| ||||| |||| ||||||||| || | ||| ||||  |||||||||||||||||||||| ||||    
T  26421725 ttaggctaaagtgcactttt-cccctctaactttcaaaaacttgcaattttgacctcctaagtacaaaa--actacaattttgaccccttaagattta 26421631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 29947931 - 29947865
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||  ||||||||| ||||| |||||||||||||||||||||| |||| |||| ||||||    
T  29947931 attgacgcggtgcggtatgcgggcgcggcgcgggagctatttcatgacgctgacagtaatatattta 29947865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 318 - 386
Target Start/End: Complemental strand, 3928960 - 3928892
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||||||||||||||||||||||  ||| ||| |||| |||||||||||| ||||| |||||| |||||    
T  3928960 aggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccctatgtatgaaaac 3928892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 10447006 - 10447074
Alignment:
Q  319 ggctaaagtgcacttttccccct-ttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    ||||||||||||||||||||||| |||||||| |||||||||| |||||  ||||| ||||| ||||||    
T  10447006 ggctaaagtgcacttttccccctcttaagtttcaaaaagttgcaattttagccccctatgtacaaaaac 10447074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 369
Target Start/End: Complemental strand, 20919633 - 20919582
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgac 369  Q
    ||||||||||||| ||||| ||| |||||||| |||||||||||||||||||    
T  20919633 aggctaaagtgcatttttcaccccttaagttttaaaaagttgcgattttgac 20919582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 372
Target Start/End: Original strand, 24626221 - 24626275
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    |||||||| |||||||||| |||| ||||||| |||| |||||||||||||||||    
T  24626221 aggctaaactgcacttttcgccctctaagttttaaaatgttgcgattttgacccc 24626275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 413
Target Start/End: Complemental strand, 1835205 - 1835111
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||||  |  ||| ||| ||||| |||| |||||||||||| | |||| |||  ||||||||||||||||| |||| ||||    
T  1835205 taggctaaagtgcacttttccatccctaactttcaaaaacttgcaattttgaccccctaagtattaaa--actacaattttgaccccctaagattta 1835111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 398
Target Start/End: Complemental strand, 10448366 - 10448284
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttg 398  Q
    ||||||||||||||||||||  || ||  ||||||| ||||||||||||||||  ||||| ||||| ||||  ||||||||||||    
T  10448366 atttaggctaaagtgcacttcccctcccctaagtttcaaaaagttgcgattttagccccctatgtacaaaa--actacaattttg 10448284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 10470545 - 10470598
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccc 371  Q
    ||||||||||||||||||||||| |||| ||| ||||| |||| ||||||||||    
T  10470545 aggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttgaccc 10470598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 25685926 - 25685869
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||||||| ||| ||| ||||| |||| |||||| |||||    
T  25685926 ttaggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccc 25685869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 48780245 - 48780302
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||||||  ||| ||| ||||| |||| ||||||||||||    
T  48780245 ttaggctaaagtgcacttttccccccctaacttttaaaaacttgcaattttgaccccc 48780302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 413
Target Start/End: Original strand, 12129626 - 12129715
Alignment:
Q  322 taaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||||  |||| ||| ||||| |||| |||||| ||||  | ||| ||||  |||||||||||||||||||||| ||||    
T  12129626 taaagtgcacttttcccctcttaactttcaaaaacttgcaattttggccccgtaagtacaaaa--actacaattttgaccccttaagattta 12129715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 13509464 - 13509368
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||| |||||||||||  ||| ||| ||||| |||| |||||| ||||||| |||| |||  ||||||||||||| ||| |||| ||||    
T  13509464 atttaggctaaagtgtacttttccccc-ctaacttttaaaaaattgcaattttggccccccaagtatgaaa--actacaattttgatcccctaagattta 13509368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 13826418 - 13826474
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||| |||  || |||| |||| ||||||||||||||||||    
T  13826418 taggctaaagtgcacttttcgccccctatgtttaaaaatgttgcgattttgaccccc 13826474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 321 - 369
Target Start/End: Complemental strand, 36729357 - 36729309
Alignment:
Q  321 ctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgac 369  Q
    |||||||||| ||||| ||| |||||||| |||||||||||||||||||    
T  36729357 ctaaagtgcatttttcaccccttaagttttaaaaagttgcgattttgac 36729309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 373
Target Start/End: Original strand, 4098656 - 4098711
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||||||||||| ||  |||||||| ||||| ||| |||||||||||||    
T  4098656 aggctaaagtgcacttttcacctcttaagttttaaaaaattgtgattttgaccccc 4098711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 371
Target Start/End: Complemental strand, 5304652 - 5304597
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccc 371  Q
    |||||||||| | |||||||| |||| ||||||| |||| ||||||||||||||||    
T  5304652 ttaggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttgaccc 5304597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 6789263 - 6789208
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||| | |||||||| |||||||||||| |||| |||||||||||| |||||    
T  6789263 aggctaaacttcacttttcgccctttaagtttcaaaatgttgcgattttggccccc 6789208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 408
Target Start/End: Complemental strand, 1964542 - 1964455
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaag 408  Q
    ||||||||||||||||||| || |||| ||| |||||||| | |||||| ||||| ||| | ||||  ||||||||||||  ||||||||    
T  1964542 ggctaaagtgcacttttccacccttaacttttaaaaagttacaattttggccccctatgaacaaaa--actacaattttggtcccttaag 1964455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 10471489 - 10471435
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||| |||| ||| ||||| |||| |||||| |||||    
T  10471489 ggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccc 10471435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 1961231 - 1961174
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||||||||||||  |||  |||||||| ||||||||| |||||| |||||    
T  1961231 ttaggctaaagtgcactttttaccccctaagtttgcaaaagttgcaattttggccccc 1961174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 318
Target Start/End: Original strand, 44420595 - 44420632
Alignment:
Q  281 gcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  44420595 gcgggtgctatttcatgacgcggacactaatatattta 44420632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 367
Target Start/End: Complemental strand, 48781147 - 48781098
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    |||||||||||||||||||||||| ||| ||| ||||| |||| ||||||    
T  48781147 aggctaaagtgcacttttccccctctaactttcaaaaatttgcaattttg 48781098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 8758935 - 8758846
Alignment:
Q  322 taaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||| |||||||||||||| |||| ||| ||||| |||| |||||| ||||| | ||| | ||  |||||||||||| ||||||||| ||||    
T  8758935 taaaatgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacagaa--actacaattttggccccttaagattta 8758846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 25684934 - 25684986
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccc 371  Q
    ||||||||||||||||||||||  ||| ||| ||||| |||| ||||||||||    
T  25684934 ggctaaagtgcacttttccccccctaactttcaaaaacttgcaattttgaccc 25684986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 39702722 - 39702666
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccc 371  Q
    |||||||||||  ||||||||  ||| ||||||||| ||||||||| ||||||||||    
T  39702722 tttaggctaaaacgcactttttgcccgttaagtttgcaaaagttgcaattttgaccc 39702666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 41877332 - 41877280
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||||||| | |||||||| |||| ||||||| |||| ||||||||||||    
T  41877332 tttaggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttg 41877280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 404
Target Start/End: Complemental strand, 49308129 - 49308045
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgacccct 404  Q
    ||||||||||||||||||||||||  ||| ||| ||||| |||| |||||| ||||| | ||| ||||  |||||||||||| |||||    
T  49308129 taggctaaagtgcacttttccccc-ctaactttcaaaaacttgcaattttggccccctaagtacaaaa--actacaattttgccccct 49308045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 50313523 - 50313487
Alignment:
Q  274 gcgcgacgcgggagctatttcatgacgcggacactaa 310  Q
    |||||||||||| |||||| |||||||||||||||||    
T  50313523 gcgcgacgcgggcgctattacatgacgcggacactaa 50313487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 1659362 - 1659296
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||    
T  1659362 attgacgcggcgcggtatgcgggcgcgacgcgggcgctattacatgacgcggacactaatatattta 1659296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 17105978 - 17105912
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||||| | |||||||||| |||||| |||||||||||||||||| ||||||    
T  17105978 attgacgcggcgcggtatgcgggtgcgacgcgggcgctattacatgacgcggacactaatatattta 17105912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 38433105 - 38433039
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||  ||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||    
T  38433105 attgacgcggtgcggtatgcgggcgcgacgcgggcgctattacatgacgcggacactaatatattta 38433039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 373
Target Start/End: Original strand, 13830270 - 13830320
Alignment:
Q  322 taaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||    
T  13830270 taaagtgcacttttcccccct-aagtttgaaaaagttgcgattttgaccccc 13830320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 28365509 - 28365565
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    |||||||||| |||||||||| ||| |||| ||| ||||||||||||||||||||||    
T  28365509 ttaggctaaaatgcacttttcaccccttaaattttaaaaagttgcgattttgacccc 28365565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 403
Target Start/End: Original strand, 36449776 - 36449860
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgacccc 403  Q
    |||||||||||||||||||||||| |||| ||| ||||| |||| |||||| ||||| | ||| ||||  |||||||||||| ||||    
T  36449776 taggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttggccccctaagtacaaaa--actacaattttgccccc 36449860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 38716190 - 38716248
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||| | |||||||| |||| ||||||| |||| ||||||||||||||||||    
T  38716190 tttaggctaaacttcacttttcaccctctaagttttaaaatgttgcgattttgaccccc 38716248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 367
Target Start/End: Complemental strand, 7899987 - 7899935
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    |||||||||||||||||||||||||| |||| ||| ||||| |||| ||||||    
T  7899987 tttaggctaaagtgcacttttccccccttaactttcaaaaacttgcaattttg 7899935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 9051333 - 9051277
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||| | |||||||| |||| ||||||| |||| ||||||||||||||||||    
T  9051333 taggctaaacttcacttttcgccctctaagttttaaaatgttgcgattttgaccccc 9051277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 15700743 - 15700795
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||||||||| |||||||| ||| |||||||| |||| ||||||||||||    
T  15700743 tttaggctaaagtccacttttcgccccttaagttttaaaatgttgcgattttg 15700795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 26829390 - 26829335
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||  || |||||||| |||| |||||||||||| |||||    
T  26829390 aggctaaagtgcacttttcatcccttaagttttaaaatgttgcgattttggccccc 26829335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 30714271 - 30714329
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||| |||  || |||| |||| |||||||||||| |||||    
T  30714271 tttaggctaaagtgcacttttcgccccctatgttttaaaatgttgcgattttggccccc 30714329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 402
Target Start/End: Complemental strand, 802692 - 802611
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccc 402  Q
    ||||||||||| |||||||||||  ||||||| ||||| |||| |||||| |||||  ||| || ||| ||||||||||||||||    
T  802692 aggctaaagtgtacttttccccc-ctaagtttcaaaaacttgcaattttggccccc--tgtgtacaaaaactacaattttgaccc 802611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 18538135 - 18538078
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||| | |||||||| |||| ||||||| |||| |||||||||||| |||||    
T  18538135 ttaggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttggccccc 18538078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 366
Target Start/End: Complemental strand, 38840596 - 38840547
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    |||||||||||||||||||||||| |||| ||| ||||| |||| |||||    
T  38840596 taggctaaagtgcacttttccccccttaactttcaaaaacttgcaatttt 38840547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 373
Target Start/End: Original strand, 2986696 - 2986740
Alignment:
Q  329 cacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||| |||||||||||| |||| |||||||||||| |||||    
T  2986696 cacttttcgccctttaagtttcaaaatgttgcgattttggccccc 2986740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 2986992 - 2986936
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||| | || || |||| |||| |||||||||||| |||||    
T  2986992 taggctaaagtgcacttttcactctctatgtttcaaaatgttgcgattttggccccc 2986936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 333 - 408
Target Start/End: Complemental strand, 5819800 - 5819727
Alignment:
Q  333 tttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaag 408  Q
    |||||||| |||||||| ||||||||||||||||| ||||  ||| | ||||  |||||||| |||| ||||||||    
T  5819800 tttccccccttaagtttcaaaaagttgcgattttggccccatatgaacaaaa--actacaatcttgatcccttaag 5819727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 403
Target Start/End: Original strand, 18797244 - 18797329
Alignment:
Q  317 taggctaaagtgcacttttcc-ccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgacccc 403  Q
    ||||||||||||||||||||| |||  ||| ||| ||||| |||| |||||||||||  | |||| |||  |||||||||||||||||    
T  18797244 taggctaaagtgcacttttccaccccctaactttcaaaaacttgcaattttgaccccttaagtattaaa--actacaattttgacccc 18797329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 372
Target Start/End: Original strand, 18904364 - 18904420
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    ||||||||||||||||||||||||| |||| ||| |||||  ||| |||||| ||||    
T  18904364 ttaggctaaagtgcacttttccccccttaactttcaaaaacgtgcaattttggcccc 18904420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 22067886 - 22067838
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    ||||||| ||||||||||  |||| |||||||||||||||||| |||||    
T  22067886 aggctaaggtgcacttttatccctctaagtttgaaaaagttgcaatttt 22067838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1303 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 1437 - 1531
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||| |||||||||||| ||| ||| ||||| |||| |||||||||||| ||||||||||  |||| |||||||||||| |||| ||||    
T  1437 taggctaaagtgtacttttccccctctaactttaaaaaacttgcaattttgaccccctatgtataaaa--actataattttgaccccctaagattta 1531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 313 - 413
Target Start/End: Original strand, 6337 - 6435
Alignment:
Q  313 tatttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttt 412  Q
    |||||||| |||||||||||||||| || |||||||| |||||||| |||||||  ||||| ||||| ||||  ||||||||||||||||| |||| |||    
T  6337 tatttaggttaaagtgcacttttccgcccttaagtttcaaaaagttacgattttagccccctatgtacaaaa--actacaattttgaccccctaagattt 6434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 403
Target Start/End: Original strand, 60090 - 60172
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgacccc 403  Q
    ||||||||||||||||||| ||| ||| ||| ||||| |||| |||||||||||| ||||||||||  |||||||||||||||||    
T  60090 ggctaaagtgcacttttcctcctctaacttttaaaaacttgcaattttgaccccctatgtataaaa--actacaattttgacccc 60172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 38871286 - 38871345
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaat 311  Q
    ||||||||||| ||||||||| |||| ||| |||||||||||||||||||||||||||||    
T  38871286 attgacgcggcgcggtatgcgggcgccacgtgggagctatttcatgacgcggacactaat 38871345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 317 - 413
Target Start/End: Original strand, 21505414 - 21505506
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||||||||||  ||| ||| ||||||||||||||||| ||||| |  |||| ||| ||||||||||||||||| |||| ||||    
T  21505414 taggctaaagtgcacttttccccc--taactttcaaaaagttgcgattttggcccccga--tatacaaaaactacaattttgaccccataagattta 21505506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Original strand, 36828093 - 36828159
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||||| ||||||| |||| |||||| |||||||||||||||||| ||||||    
T  36828093 attgacgcggcgcggtatgcgggcgcgactcgggcgctattacatgacgcggacactaatatattta 36828159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 37617769 - 37617703
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||||| | |||||||||| |||||| |||||||||||||||||| ||||||    
T  37617769 attgacgcggcgcggtatgcgggtgcgacgcgggcgctattacatgacgcggacactaatatattta 37617703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 316 - 408
Target Start/End: Complemental strand, 7501956 - 7501866
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaag 408  Q
    |||||||||||||||||||||||||| ||| ||| ||||| |||| |||||| ||||| | |||| ||||||  ||||||||| |||||||||    
T  7501956 ttaggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccctaagtatcaaaaca--acaattttggccccttaag 7501866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 4968714 - 4968648
Alignment:
Q  252 attgacgcggcacggtatgcgagcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||||| ||||||| | |||||||||||| ||| || |||||||||||||||||| ||||||    
T  4968714 attgacgcggcgcggtatgtgggcgcgacgcgggcgcttttacatgacgcggacactaatatattta 4968648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 19919909 - 19919851
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||| | |||||||| |||| ||||||| |||| ||||||||||||||||||    
T  19919909 tttaggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttgaccccc 19919851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 15681594 - 15681643
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||||||| ||||||| ||| |||||||| |||||||||||||||||    
T  15681594 aggctaaagtgaacttttcacccattaagttttaaaaagttgcgattttg 15681643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 9822371 - 9822323
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    ||||||||||||||||||| ||| |||||||| ||||||||| ||||||    
T  9822371 aggctaaagtgcacttttcaccccttaagttttaaaaagttgtgatttt 9822323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 366
Target Start/End: Complemental strand, 10724296 - 10724248
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgatttt 366  Q
    ||||||||||||||||||| ||| |||||||| ||||||||| ||||||    
T  10724296 aggctaaagtgcacttttcaccccttaagttttaaaaagttgtgatttt 10724248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 17782656 - 17782600
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||||||||||||||||| ||| ||| ||||| |||| |||||| |||||    
T  17782656 taggctaaagtgcacttttccccctctaactttcaaaaacttgcaattttggccccc 17782600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 19493622 - 19493566
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||| |||| |||| ||||| |||||||||||| |||| ||||||||||||||||||    
T  19493622 taggttaaactgcatttttcgccctttaagttttaaaatgttgcgattttgaccccc 19493566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 317 - 373
Target Start/End: Complemental strand, 21224658 - 21224602
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||| | |||||||| |||| ||||||| |||| ||||||||||||||||||    
T  21224658 taggctaaacttcacttttcgccctctaagtttcaaaatgttgcgattttgaccccc 21224602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 373
Target Start/End: Complemental strand, 20636923 - 20636868
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||||||||||| |||  || |||| |||| ||||||||||||||||||    
T  20636923 aggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgattttgaccccc 20636868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 373
Target Start/End: Original strand, 27869195 - 27869250
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||||||||||| |||  || |||| |||| ||||||||||||||||||    
T  27869195 aggctaaagtgcacttttcgccccctatgtttcaaaatgttgcgattttgaccccc 27869250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 373
Target Start/End: Complemental strand, 3227698 - 3227641
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||||||  ||| ||| ||||| |||| |||||| |||||    
T  3227698 ttaggctaaagtgcacttttccccccctaactttcaaaaacttgcaattttggccccc 3227641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 367
Target Start/End: Original strand, 5111441 - 5111490
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||||||||||||||| ||| |||||||| ||||| ||| |||||||    
T  5111441 aggctaaagtgcacttttcaccccttaagtttcaaaaacttgtgattttg 5111490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 370
Target Start/End: Complemental strand, 32253501 - 32253448
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacc 370  Q
    ||||||||||| ||||||||| || |||||||  |||||||||| |||||||||    
T  32253501 taggctaaagtacacttttccacccttaagttgcaaaaagttgcaattttgacc 32253448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 318
Target Start/End: Original strand, 4553967 - 4554011
Alignment:
Q  274 gcgcgacgcgggagctatttcatgacgcggacactaatgtattta 318  Q
    ||||||||| || ||||||||||||||| ||||||||| ||||||    
T  4553967 gcgcgacgctggcgctatttcatgacgcagacactaatatattta 4554011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 17781663 - 17781715
Alignment:
Q  321 ctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||||||||||||  ||| ||| ||||| |||| ||||||||||||    
T  17781663 ctaaagtgcacttttccccccctaactttcaaaaacttgcaattttgaccccc 17781715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 24448345 - 24448289
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgacccc 372  Q
    ||||| |||| | |||||||| || ||||||||| |||| |||||||||||||||||    
T  24448345 ttaggttaaatttcacttttctccatttaagttttaaaatgttgcgattttgacccc 24448289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 373
Target Start/End: Original strand, 31949316 - 31949376
Alignment:
Q  313 tatttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||||||||||||||||||||||| |  ||| ||| ||||| |||| |||||| |||||    
T  31949316 tatttaggctaaagtgcacttttccctccctaattttcaaaaacttgcaattttggccccc 31949376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 413
Target Start/End: Complemental strand, 49536 - 49442
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||| ||| |||| ||| |||||||||| |||||| ||||| ||  ||||||  ||||||||||||||||| |||| ||||    
T  49536 taggctaaagtgcacttttctccccttaactttaaaaaagttgcaattttggccccctataaataaaa--actacaattttgaccccctaagattta 49442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 367
Target Start/End: Original strand, 39342 - 39392
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    |||||||||||||||||||||||| |||||||| |||||||| | ||||||    
T  39342 taggctaaagtgcacttttccccccttaagttttaaaaagttacaattttg 39392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 314 - 386
Target Start/End: Complemental strand, 225 - 153
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||| ||||||||||||||||||||||  ||| ||| |||| |||||||||||| |||||||||||| |||||    
T  225 attttggctaaagtgcacttttccccccctaactttcaaaacgttgcgattttggccccccatgtatgaaaac 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 413
Target Start/End: Complemental strand, 5542 - 5447
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    |||||||||||||||||||||||||  ||| ||| ||||| |||| |||||||||||  | ||| ||||  |||||||||||| ||||||||| ||||    
T  5542 ttaggctaaagtgcacttttccccccctaattttcaaaaacttgcaattttgaccccttaagtacaaaa--actacaattttgcccccttaagattta 5447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 373
Target Start/End: Original strand, 454926 - 454983
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||| ||||||| |||||    
T  454926 ttaggctaaagtgcacttttcacccattaagttttaaaaagttgtgattttggccccc 454983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 413
Target Start/End: Original strand, 19483 - 19580
Alignment:
Q  314 atttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgaccccttaagtttta 413  Q
    ||||||||||||||||| ||||||||| |||| ||| ||||  |||| |||||| ||||| | ||||||||  ||||||||||||| ||| |||| ||||    
T  19483 atttaggctaaagtgcatttttccccccttaattttcaaaaccttgcaattttggccccctaagtataaaa--actacaattttgatcccctaagattta 19580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 13192 - 13251
Alignment:
Q  318 aggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgta 379  Q
    |||||||||||||||||||||||  ||| ||||||||||||| |||||||||| || |||||    
T  13192 aggctaaagtgcacttttccccc--taactttgaaaaagttgtgattttgacctcctatgta 13251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 401
Target Start/End: Original strand, 18730 - 18808
Alignment:
Q  321 ctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgacc 401  Q
    ||||||||||||||| |||  |||| ||| |||||||||||||||||||| || ||| | ||||  |||||||||||||||    
T  18730 ctaaagtgcactttttccctcttaacttttaaaaagttgcgattttgacctcctatgaacaaaa--actacaattttgacc 18808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 403
Target Start/End: Original strand, 17467 - 17552
Alignment:
Q  316 ttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaacactacaattttgacccc 403  Q
    |||||||||||||||||||| |||| |||| ||| ||||| |||| |||||| ||||| | ||| ||||  |||||||||||| ||||    
T  17467 ttaggctaaagtgcactttttcccccttaacttttaaaaacttgcaattttggccccctaagtacaaaa--actacaattttggcccc 17552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 49655 - 49707
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||||||||| |||||||| ||| |||||||| |||| ||||||||||||    
T  49655 tttaggctaaagtccacttttcgccccttaagttttaaaatgttgcgattttg 49707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 367
Target Start/End: Original strand, 62194 - 62246
Alignment:
Q  315 tttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttg 367  Q
    ||||||||||||| |||||||| ||| |||||||| |||| ||||||||||||    
T  62194 tttaggctaaagtccacttttcgccccttaagttttaaaatgttgcgattttg 62246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2034 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold2034
Description:

Target: scaffold2034; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 319 - 386
Target Start/End: Original strand, 233 - 300
Alignment:
Q  319 ggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccccatgtataaaaac 386  Q
    |||||||||||||||| ||||| |||| ||| |||||||||| ||||||  |||| ||||| ||||||    
T  233 ggctaaagtgcactttcccccccttaactttcaaaaagttgcaattttggtcccctatgtacaaaaac 300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 373
Target Start/End: Original strand, 1990 - 2051
Alignment:
Q  312 gtatttaggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    |||||| ||||||| |  ||||||| |||| ||||||| |||| ||||||||||||||||||    
T  1990 gtattttggctaaactttacttttcgccctctaagttttaaaatgttgcgattttgaccccc 2051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1875 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1875
Description:

Target: scaffold1875; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 373
Target Start/End: Original strand, 754 - 810
Alignment:
Q  317 taggctaaagtgcacttttccccctttaagtttgaaaaagttgcgattttgaccccc 373  Q
    ||||||||| |||||||||| ||| ||||||||  ||| |||||||||||| |||||    
T  754 taggctaaactgcacttttcaccccttaagtttcgaaatgttgcgattttggccccc 810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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