View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5532-Insertion-6 (Length: 193)
Name: NF5532-Insertion-6
Description: NF5532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5532-Insertion-6 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 8e-97; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 6855057 - 6855235
Alignment:
| Q |
15 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
114 |
Q |
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| T |
6855057 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
6855156 |
T |
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| Q |
115 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtac |
193 |
Q |
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| T |
6855157 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtac |
6855235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 6823164 - 6823024
Alignment:
| Q |
8 |
aaaattcatcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactc |
107 |
Q |
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| T |
6823164 |
aaaattcatcccttcaaagcttgtttttcctttctctttcggatcttcagaacattcttgactatctttttctcttcaaccaagaaagctcgaatgattc |
6823065 |
T |
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| Q |
108 |
tttctcgaacagcaccaccagataaaacaccaccatatgca |
148 |
Q |
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| T |
6823064 |
tttctctaacagcgcctccacataaaatactacaatatgca |
6823024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 24245769 - 24245690
Alignment:
| Q |
17 |
cccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
96 |
Q |
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| T |
24245769 |
cccttcaaagcttgcttttcctttgtcttttggatcttcaagactttcttgacgatcttttgctcttcaaccaagaaagc |
24245690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 107 - 193
Target Start/End: Complemental strand, 24245067 - 24244981
Alignment:
| Q |
107 |
ctttctcgaacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtac |
193 |
Q |
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| T |
24245067 |
ctttctctaacagcacctccagataaaactccaccataggcacgattcacagtcctcctgtttctaggtaacctagatctcttgtac |
24244981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 2418844 - 2418914
Alignment:
| Q |
26 |
gcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
96 |
Q |
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| T |
2418844 |
gcttgcttttcttttgttttctggatcttcaaaactttcttaactattttttgctcttcaacaaggaaagc |
2418914 |
T |
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