View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5532_low_1 (Length: 304)
Name: NF5532_low_1
Description: NF5532
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5532_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 241596 - 241401
Alignment:
| Q |
19 |
ccaataagtatgatatctccgttagcaatccaaaccttcttgtgcatcttaccacggatatgacagagacgttttctgatgttgttatcgttgtcgatgc |
118 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
241596 |
ccaataagtattatatctccgttagcaatccaaaccttcttgtgcatcttaccccggatatgacagagacgttttctgatgttgttctcgttgtcgatgc |
241497 |
T |
|
| Q |
119 |
aattcgcttccaaccgtccgtttccaagcatacgtgttacctgtgcgtattcttgaccgtcttctttgaagatcagttcccgtttctcatcgtcag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
241496 |
aattcgcttccaaccgtccgtttccaagcatacgtgttacctgtgcgtattcttgaccgtcttctttgaagatcagttcgcgtttctcatcgtcag |
241401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 10520653 - 10520700
Alignment:
| Q |
42 |
agcaatccaaaccttcttgtgcatcttaccacggatatgacagagacg |
89 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10520653 |
agcaatccaaaccttcttgtgcatctttccacggatatgacagagacg |
10520700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 188
Target Start/End: Original strand, 10520735 - 10520787
Alignment:
| Q |
136 |
ccgtttccaagcatacgtgttacctgtgcgtattcttgaccgtcttctttgaa |
188 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||| ||||| |
|
|
| T |
10520735 |
ccgtttccaagcatacgaagaacctgtgcgtattcttgaccatcttccttgaa |
10520787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University