View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5533-Insertion-1 (Length: 835)
Name: NF5533-Insertion-1
Description: NF5533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5533-Insertion-1 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 742; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 742; E-Value: 0
Query Start/End: Original strand, 5 - 835
Target Start/End: Complemental strand, 42894739 - 42893917
Alignment:
| Q |
5 |
acactgtcgtcgtagattcgatgttaatattatgttacttttgttgccgctatttttattgaatgatgtcaaacatgaacaaattggataaaacagcaat |
104 |
Q |
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| T |
42894739 |
acactgtcgtcgtagatacgatgttaatattatgttacttttgttgccgctatttttattgaatgatgtcaaacatgaacaaattggataaaacagcaat |
42894640 |
T |
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| Q |
105 |
attaataaaagagaaatggaagtcaagataagctaaaagattgattttgaccttaaatttcaacaagaaaactaaaagggtacatcatgtaaaaccctac |
204 |
Q |
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| T |
42894639 |
attaataaaagagaaatggaagtcaagataagctaaaagattgattttgaccttaaatttcaacaagaaaactaaaagggtacatcatgtaaaaccctac |
42894540 |
T |
|
| Q |
205 |
tacactgaaacccccctaatattcttaaatttcacagtacatatannnnnnnnnactattgattaaaatagtgctatttacgctccacttcttgtctctt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42894539 |
tacactgaaacccccctaatattcttaaatttcacagtacatttttttttttttactattgattaaaatagtgctatttacgctccacttcttgtctctt |
42894440 |
T |
|
| Q |
305 |
tctctgctttgacaaaatcacaaaattgttgggannnnnnnacctcaatgaaagatggtaaaaatagagcgcaagtagcactactcataataaaaagcat |
404 |
Q |
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| T |
42894439 |
tctctgctttgacaaaat--------tgttgggatttttttacctcaatgaaagatggtaaaaatagagcgcaagtagcactactcataataaaaagcat |
42894348 |
T |
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| Q |
405 |
attcctaggattaaattataagttactgctactaatactactattaatgataatattcctagctcttagaaaaacagaggtttgaaacagagtactctgt |
504 |
Q |
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| T |
42894347 |
attcctaggattaaattataagttactgctactaatactactattaatgataatattcctagctcttagaaaaacagaggtttgaaacagagtactctgt |
42894248 |
T |
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| Q |
505 |
ttctaactctgttattactctaactcttcttattgttgttgttctcagcgttgagaaaatcaagcaaaacggtgctgtgacattttggacattttggatc |
604 |
Q |
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| T |
42894247 |
ttctaactctgttattactctaactcttcttattgttgttgttctcagcgttgagaaaatcaagcaaaacggtgctgtgacattttggacattttggatc |
42894148 |
T |
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| Q |
605 |
attctcagagagcatcacatacatgagacaacgaggacaacctactaacagcatggaggttgcttcagggctgcttgatccattctcagatgaaacacat |
704 |
Q |
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| T |
42894147 |
attctcagagagcatcacatacatgagacaacgaggacaacctactaacagcatggaggttgcttcagggctgcttgatccattctcagatgaaacacat |
42894048 |
T |
|
| Q |
705 |
gaactcggcggcgacaccgacgctgatcgtgttggtgatgattccattcttctgttcacccttggtggtgacaaattcagcttcaaatctagctttggcc |
804 |
Q |
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| T |
42894047 |
gaactcggcggcgacaccgacgctgatcgtgttggtgatgattccattcttctgttcacccttggtggtgacaaattcagcttcaaatctagctttggcc |
42893948 |
T |
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| Q |
805 |
cacttccgtttcttctactcatcttcttcct |
835 |
Q |
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| T |
42893947 |
cacttccgtttcttctactcatcttcttcct |
42893917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 561 - 677
Target Start/End: Original strand, 25583631 - 25583747
Alignment:
| Q |
561 |
aaatcaagcaaaacggtgctgtgacattttggacattttggatcattctcagagagcatcacatacatgagacaacgaggacaacctactaacagcatgg |
660 |
Q |
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|||||||| ||||| ||||| | |||||| || || |||||||||| ||||| ||||| |||||||| ||||||||||||||||| || || | ||||| |
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| T |
25583631 |
aaatcaagtaaaacagtgcttttacatttagggcactttggatcatcttcagaaagcatgacatacataagacaacgaggacaaccaaccaaaaccatgg |
25583730 |
T |
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| Q |
661 |
aggttgcttcagggctg |
677 |
Q |
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| T |
25583731 |
aagtggcttctgggctg |
25583747 |
T |
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