View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5533-Insertion-2 (Length: 575)
Name: NF5533-Insertion-2
Description: NF5533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5533-Insertion-2 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 176 - 575
Target Start/End: Original strand, 42924699 - 42925098
Alignment:
| Q |
176 |
tattatcttagtaacaattgcacggggagcataatataactgttcagtaattgatcgatgctaatatataaactagataggaatctctaaacccgccaaa |
275 |
Q |
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| T |
42924699 |
tattatcttagtaacaattacacggggagcataatatagctgttcagtaattgatcgatgctaatatataaactagataggaatctctaaacccgccaaa |
42924798 |
T |
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| Q |
276 |
tatgctattactaactttggaagtagtatgaatgaaatttgaagaagaaattaggagaatatattcattcaataatcaagacttcgtttctttctttcat |
375 |
Q |
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| T |
42924799 |
aatgctattactaactttggaagtagtatgaatgaaatttgaagaagaaattaggagaatatattcattcaataatcaagacttcgtttctttctttcat |
42924898 |
T |
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| Q |
376 |
tatttcttgcatatttggattttgttattcctactgtgattggttagtttcttgaatgatcattttctgcatttcttatttgttgtatgattcagtcttg |
475 |
Q |
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| T |
42924899 |
tatttcttgcatatttggattttgttattcctactgtgattggttagtttcttgaatgatcattttctgcatttcttatttgttgtatgattcagtcttg |
42924998 |
T |
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| Q |
476 |
attttgcttctgcattgcttttctttcaagtttccaattcccttcaaacaccgtttctttcaatcattttgatttgattctaacatcatcctttatgagc |
575 |
Q |
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| T |
42924999 |
attttgcttctgcattgcttttctttcaagtttccaattcccttcaaacaccgtttctttcaatcattttgatttgattctaacatcatcctttatgagc |
42925098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 12 - 98
Target Start/End: Original strand, 42924535 - 42924621
Alignment:
| Q |
12 |
gacactcgttgacaagaccctattaaaaaatacagtgaaaacccattttgttcattcacaaatttcgtgcggatcaatttagccttc |
98 |
Q |
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| T |
42924535 |
gacactcgttgacaagaccctattaaaaaatatagggaaaatccattttgttcattcacaaatttcgtgcggatcaatttagccttc |
42924621 |
T |
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