View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5533-Insertion-3 (Length: 388)

Name: NF5533-Insertion-3
Description: NF5533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5533-Insertion-3
NF5533-Insertion-3
[»] chr8 (1 HSPs)
chr8 (8-388)||(41136902-41137282)


Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 41137282 - 41136902
Alignment:
Q  8 atctcatattggacttgtaaaataagccgtagaaagttccacgaaacagtataaatgactggttttattataaattaaatctgttgtatagttctggagt 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  41137282 atctcatattggacttgtaaaataagccgtagaaagttccacgaaacagtataaatgactggttttattataaattaaatctgttgtataattctggagt 41137183  T
Q  108 ttcttacaaaaatgcaaaatctaatctcaagaatgaatctgaacatttgcaattagtctagtgagtttgcttaacgtttcacgagcaaatatagtatccg 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41137182 ttcttacaaaaatgcaaaatctaatctcaagaatgaatctgaacatttgcaattagtctagtgagtttgcttaacgtttcacgagcaaatatagtatccg 41137083  T
Q  208 gatgatcatcaccgcaaattgaactcctgataaaaatggctttcttgattagatcactccctatatcaaattgtgctcctcttagcataagcttagctct 307  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41137082 gatgatcatcaccacaaattgaactcctgataaaaatggctttcttgattagatcactccctatatcaaattgtgctcctcttagcataagcttagctct 41136983  T
Q  308 agtctcaagtactgtggctctacatagtgctagctcttgccaaagacaaggattcaactgagcattagtttgaatggatct 388  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41136982 agtctcaagtactgtggctctacatagtgctagctcttgccaaagacaaggattcaactgagcattagtttgaatggatct 41136902  T

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