View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5533-Insertion-4 (Length: 311)

Name: NF5533-Insertion-4
Description: NF5533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5533-Insertion-4
NF5533-Insertion-4
[»] chr6 (23 HSPs)
chr6 (12-311)||(4483260-4483559)
chr6 (104-252)||(12731559-12731709)
chr6 (143-243)||(6643329-6643429)
chr6 (171-266)||(4787770-4787865)
chr6 (145-261)||(11650916-11651033)
chr6 (197-252)||(10729942-10729997)
chr6 (211-248)||(28865483-28865520)
chr6 (185-225)||(4485691-4485731)
chr6 (171-261)||(479799-479888)
chr6 (93-155)||(4033094-4033158)
chr6 (218-282)||(4483343-4483405)
chr6 (147-266)||(5706647-5706767)
chr6 (104-192)||(1473599-1473689)
chr6 (93-141)||(4032958-4033008)
chr6 (95-258)||(12731529-12731694)
chr6 (211-266)||(17600698-17600753)
chr6 (212-266)||(4033086-4033140)
chr6 (212-266)||(17389991-17390045)
chr6 (143-221)||(31989170-31989248)
chr6 (104-178)||(479787-479863)
chr6 (197-266)||(1473606-1473675)
chr6 (96-141)||(24691922-24691967)
chr6 (218-254)||(24110066-24110102)
[»] chr4 (27 HSPs)
chr4 (104-266)||(21433864-21434028)
chr4 (106-242)||(1338419-1338555)
chr4 (94-266)||(15134541-15134715)
chr4 (143-261)||(2247576-2247693)
chr4 (108-266)||(21433861-21434021)
chr4 (119-232)||(33414002-33414117)
chr4 (96-252)||(9023886-9024044)
chr4 (107-266)||(32286221-32286379)
chr4 (107-257)||(52374904-52375056)
chr4 (143-258)||(16457945-16458059)
chr4 (175-261)||(7403140-7403226)
chr4 (197-258)||(33414002-33414063)
chr4 (171-266)||(3688623-3688719)
chr4 (125-250)||(19382302-19382424)
chr4 (108-248)||(31758677-31758817)
chr4 (143-201)||(45654067-45654125)
chr4 (196-266)||(52374908-52374978)
chr4 (104-164)||(7403176-7403238)
chr4 (190-261)||(41840589-41840660)
chr4 (130-192)||(993229-993291)
chr4 (196-261)||(1338429-1338492)
chr4 (108-141)||(2247568-2247601)
chr4 (171-204)||(2324811-2324844)
chr4 (211-268)||(16577344-16577401)
chr4 (107-163)||(34252008-34252065)
chr4 (196-261)||(34252017-34252081)
chr4 (106-139)||(42516565-42516598)
[»] chr8 (23 HSPs)
chr8 (104-252)||(8402485-8402631)
chr8 (119-257)||(34504377-34504517)
chr8 (105-252)||(2288584-2288733)
chr8 (171-261)||(27072868-27072958)
chr8 (169-266)||(17893308-17893405)
chr8 (169-258)||(35586454-35586543)
chr8 (104-266)||(40694604-40694768)
chr8 (118-266)||(20271006-20271161)
chr8 (118-266)||(21057634-21057789)
chr8 (97-178)||(27072894-27072977)
chr8 (120-258)||(34504377-34504517)
chr8 (104-266)||(40694597-40694761)
chr8 (119-257)||(40175893-40176034)
chr8 (95-237)||(42072637-42072779)
chr8 (143-266)||(40696213-40696336)
chr8 (197-266)||(40566535-40566604)
chr8 (104-155)||(4994257-4994308)
chr8 (95-141)||(20271131-20271177)
chr8 (95-141)||(21057759-21057805)
chr8 (171-237)||(38835053-38835119)
chr8 (125-246)||(42072671-42072792)
chr8 (169-249)||(3311582-3311662)
chr8 (144-204)||(26018513-26018573)
[»] chr3 (28 HSPs)
chr3 (104-266)||(36480698-36480862)
chr3 (94-257)||(40554015-40554177)
chr3 (143-236)||(13540201-13540294)
chr3 (143-248)||(35357326-35357431)
chr3 (93-266)||(36480680-36480855)
chr3 (169-261)||(14345147-14345239)
chr3 (197-260)||(3901572-3901635)
chr3 (95-237)||(1753291-1753435)
chr3 (104-257)||(29955022-29955177)
chr3 (104-257)||(30004176-30004331)
chr3 (183-257)||(799306-799380)
chr3 (117-248)||(3901508-3901635)
chr3 (143-244)||(31205394-31205495)
chr3 (169-257)||(19560680-19560768)
chr3 (103-204)||(36007408-36007511)
chr3 (185-266)||(35415036-35415117)
chr3 (169-266)||(37189195-37189292)
chr3 (169-254)||(51541248-51541333)
chr3 (103-139)||(26986276-26986312)
chr3 (108-257)||(32880985-32881136)
chr3 (172-244)||(45332557-45332629)
chr3 (95-155)||(14345126-14345188)
chr3 (169-252)||(40117777-40117860)
chr3 (95-153)||(1458515-1458573)
chr3 (143-237)||(11532455-11532549)
chr3 (108-185)||(16993339-16993416)
chr3 (197-266)||(31205360-31205429)
chr3 (197-257)||(11532514-11532574)
[»] chr1 (26 HSPs)
chr1 (143-266)||(34437623-34437745)
chr1 (143-261)||(2542698-2542816)
chr1 (143-237)||(40374057-40374150)
chr1 (169-258)||(31970119-31970208)
chr1 (175-252)||(40668986-40669063)
chr1 (104-257)||(34437598-34437752)
chr1 (95-258)||(7444256-7444421)
chr1 (103-248)||(38663634-38663781)
chr1 (97-179)||(21281454-21281539)
chr1 (168-258)||(49822578-49822668)
chr1 (93-252)||(40668934-40669093)
chr1 (143-266)||(939359-939482)
chr1 (197-261)||(21281473-21281538)
chr1 (197-266)||(38663642-38663711)
chr1 (170-237)||(39131583-39131650)
chr1 (119-260)||(31970119-31970262)
chr1 (172-224)||(39184184-39184236)
chr1 (104-252)||(45563050-45563200)
chr1 (104-139)||(5695662-5695697)
chr1 (169-235)||(23317960-23318026)
chr1 (171-204)||(731383-731416)
chr1 (171-204)||(18075217-18075250)
chr1 (211-260)||(31851952-31852001)
chr1 (104-178)||(49822607-49822683)
chr1 (95-139)||(7444401-7444445)
chr1 (169-257)||(45215378-45215466)
[»] chr2 (27 HSPs)
chr2 (104-227)||(42094233-42094357)
chr2 (169-261)||(15194531-15194623)
chr2 (95-257)||(25666798-25666962)
chr2 (95-266)||(1469730-1469891)
chr2 (169-257)||(42251214-42251302)
chr2 (169-252)||(33171650-33171733)
chr2 (143-250)||(37810153-37810260)
chr2 (174-266)||(35715029-35715121)
chr2 (104-237)||(3466407-3466542)
chr2 (169-243)||(17383774-17383848)
chr2 (120-258)||(42029342-42029482)
chr2 (197-266)||(42094282-42094350)
chr2 (93-257)||(16209375-16209541)
chr2 (171-258)||(12779501-12779587)
chr2 (169-252)||(33069172-33069255)
chr2 (93-252)||(37810119-37810280)
chr2 (98-248)||(33069145-33069297)
chr2 (170-244)||(44247590-44247664)
chr2 (170-254)||(4237253-4237337)
chr2 (95-139)||(6979116-6979160)
chr2 (143-258)||(9430162-9430277)
chr2 (210-261)||(41496055-41496106)
chr2 (104-155)||(15194519-15194572)
chr2 (188-261)||(2302055-2302126)
chr2 (197-266)||(25666877-25666946)
chr2 (172-201)||(36283538-36283567)
chr2 (125-258)||(45300366-45300501)
[»] chr5 (20 HSPs)
chr5 (143-258)||(3907655-3907768)
chr5 (95-232)||(3907631-3907768)
chr5 (169-249)||(42420068-42420148)
chr5 (169-268)||(25545209-25545306)
chr5 (143-261)||(41169415-41169533)
chr5 (106-236)||(36059228-36059360)
chr5 (169-261)||(33029490-33029582)
chr5 (143-202)||(3771221-3771280)
chr5 (95-247)||(27195262-27195415)
chr5 (143-258)||(4190084-4190201)
chr5 (104-252)||(25545204-25545352)
chr5 (95-248)||(33029469-33029624)
chr5 (143-234)||(4158102-4158193)
chr5 (211-261)||(17474866-17474916)
chr5 (95-141)||(35244938-35244984)
chr5 (119-205)||(32309649-32309737)
chr5 (192-248)||(7721397-7721453)
chr5 (175-251)||(22399776-22399852)
chr5 (222-266)||(35244924-35244968)
chr5 (108-204)||(38029531-38029626)
[»] chr7 (21 HSPs)
chr7 (147-258)||(2276276-2276387)
chr7 (104-252)||(12275743-12275893)
chr7 (119-252)||(49106911-49107045)
chr7 (104-252)||(40134393-40134539)
chr7 (197-258)||(49106984-49107045)
chr7 (104-252)||(26862918-26863068)
chr7 (104-258)||(5443529-5443684)
chr7 (173-250)||(10056630-10056707)
chr7 (143-266)||(3235550-3235673)
chr7 (170-228)||(42986261-42986319)
chr7 (104-258)||(5452574-5452729)
chr7 (206-261)||(31042391-31042446)
chr7 (183-261)||(40134452-40134527)
chr7 (93-252)||(2276254-2276411)
chr7 (196-257)||(7017164-7017225)
chr7 (196-257)||(7032522-7032583)
chr7 (197-258)||(12275817-12275878)
chr7 (197-266)||(26862992-26863061)
chr7 (125-210)||(18089749-18089836)
chr7 (218-266)||(22026089-22026137)
chr7 (104-132)||(31042430-31042458)
[»] scaffold0003 (2 HSPs)
scaffold0003 (104-234)||(136344-136476)
scaffold0003 (211-268)||(136414-136471)
[»] scaffold0137 (1 HSPs)
scaffold0137 (169-260)||(8232-8322)
[»] scaffold0015 (1 HSPs)
scaffold0015 (211-268)||(201050-201107)


Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 4483260 - 4483559
Alignment:
Q  12 gcaccagtgggactcaatcactacaacataatagaatgaaaacataataaaatggaaatatcatttttagaagtaatctagatgagaaatattagcaaca 111  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  4483260 gcaccagtgggactcaatcactacaacatagtagaatgaaaacataataaaatggaaatatcatttttagaagtaatctagatgagaaatactagcaaca 4483359  T
Q  112 catattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgaccta 211  Q
     | |||||||||||||||||||||||| || ||||||||||||| ||||| |  |  |||||||||||||||||||||||||||||||||||||||||||    
T  4483360 tacattttaacatacacttttcaacactctctttgattggttaaaattaatacgggtcccaccaaatcatgtgggacccatataaatttggtgtgaccta 4483459  T
Q  212 tgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgtatcgcttgtatttctcctaaatacactcacaaacgtttgctcaaa 311  Q
     ||||||||||||  |||||||||||||||||||||||||  |||||||| |||| | ||| |||||||||||||||||| |||||||||||||||||||    
T  4483460 cgtgagttttaacggatcaaagagagcgtgttgaaaagtgcgtgttaaaatgtgtgttgctagtatttctcctaaatacaatcacaaacgtttgctcaaa 4483559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 12731709 - 12731559
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||||||||||| ||||| ||| ||| ||||||||| |||  |||||||||| ||| |||| |   ||||||||||||||||| |||| |||||||||    
T  12731709 tagcaacacatattataacacacattttccaacacactctttttgattggttaaaatttacatagcttccaccaaatcatgtgggtcccaaataaatttg 12731610  T
Q  202 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
     || | |  |||||| |||||||||||||||||||  ||||||| ||||||    
T  12731609 atgggtctcatgtgaattttaaccaatcaaagagaatgtgttgagaagtgt 12731559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 6643429 - 6643329
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
    ||||||||||||| ||| | || |  |||||||||||||||||| |||||||||||||||||    |||||||| |||||||||||||| ||||| ||||    
T  6643429 tttgattggttaaaattcatataggtcccaccaaatcatgtgggtcccatataaatttggtggtcactatgtgaattttaaccaatcaatgagagtgtgt 6643330  T
Q  243 t 243  Q
    |    
T  6643329 t 6643329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 4787770 - 4787865
Alignment:
Q  171 caccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||||||||| |||||||||| |||| ||   ||  |||||||||||||||||||||||||||  |||| |||| |||||||||||| ||||    
T  4787770 caccaaatcatgtgagacccatatagatttagtagaactcatgtgagttttaaccaatcaaagagagactgttaaaaaatgtatgttaaaatgtgt 4787865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 261
Target Start/End: Original strand, 11650916 - 11651033
Alignment:
Q  145 tgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaa-ccaatcaaagagagcgtgtt 243  Q
    ||||||||||| ||| |||| || |||||||||| ||||||| ||||||||||||||||| | || |||| | |||||| |||||||||||||   ||||    
T  11650916 tgattggttaaaattcacatggatcccaccaaattatgtgggtcccatataaatttggtgggtcccatgtaaattttaagccaatcaaagagattatgtt 11651015  T
Q  244 gaaaagtgtatgttaaaa 261  Q
    ||||| ||  ||||||||    
T  11651016 gaaaaatgcgtgttaaaa 11651033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 10729942 - 10729997
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    |||||||| ||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  10729942 atttggtgcgacctatatgaattttaaccgatcaaagagagcgtgttgaaaagtgt 10729997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Original strand, 28865483 - 28865520
Alignment:
Q  211 atgtgagttttaaccaatcaaagagagcgtgttgaaaa 248  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28865483 atgtgagttttaaccaatcaaagagagcgtgttgaaaa 28865520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 4485691 - 4485731
Alignment:
Q  185 ggacccatataaatttggtgtgacctatgtgagttttaacc 225  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  4485691 ggacccatataaacttggtgtgacctatgtgagttttaacc 4485731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 261
Target Start/End: Complemental strand, 479888 - 479799
Alignment:
Q  171 caccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    |||||||||||||||| || |||||||||||||| || | |||||| ||||||||||||||| | || || ||||||| ||| | ||||||    
T  479888 caccaaatcatgtggggcc-atataaatttggtgggatcaatgtgaattttaaccaatcaaataaagtgttttgaaaaatgtttattaaaa 479799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 4033158 - 4033094
Alignment:
Q  93 atgagaaatattagcaacacatattttaacatacacttttcaacacac--tgtttgattggttaa 155  Q
    ||||||||||||| ||||||| ||||||||| ||||||||||| ||||  | |||||||||||||    
T  4033158 atgagaaatattaacaacacacattttaacacacacttttcaatacactatctttgattggttaa 4033094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 4483405 - 4483343
Alignment:
Q  218 ttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgtatcgcttgtatttctc 282  Q
    ||||||||||||||||||||  |||||||||||||||||||||| || | | ||| |||||||||    
T  4483405 ttttaaccaatcaaagagag--tgttgaaaagtgtatgttaaaatgtatgttgctagtatttctc 4483343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 266
Target Start/End: Original strand, 5706647 - 5706767
Alignment:
Q  147 attggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttgg-tgtgacctatgtgagttttaaccaatcaaagagagcgtgttga 245  Q
    ||||||||| ||| | || || |||||||||||||||| | | ||||| ||||| | || | || |||| | |||||| ||||||||||||| |||||||    
T  5706647 attggttaaaattcatatggatcccaccaaatcatgtgcgtctcatatcaattttgatgggtcccatgtaaattttaatcaatcaaagagagtgtgttga 5706746  T
Q  246 aaagtgtatgttaaaacgtgt 266  Q
    ||||| | |||||||| ||||    
T  5706747 aaagtatgtgttaaaatgtgt 5706767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 1473599 - 1473689
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacac--tgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccat 192  Q
    |||||||||| ||||||| | ||| ||||||||||||  | ||||||||||||| ||| |||| |   ||||||||||||||||| |||||    
T  1473599 tagcaacacacattttaatacacatttttcaacacactatctttgattggttaaaattcacatgggttccaccaaatcatgtgggtcccat 1473689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 4032958 - 4033008
Alignment:
Q  93 atgagaaatattagcaacacatattttaacat--acacttttcaacacact 141  Q
    ||||||||| ||||||||||||||||||||||  ||| |||||||||||||    
T  4032958 atgagaaatgttagcaacacatattttaacataaacatttttcaacacact 4033008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 258
Target Start/End: Original strand, 12731529 - 12731694
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacat-tgaccccaccaaatcatgtgggaccca 191  Q
    ||||||| ||||||||||||||| ||| | |||||| ||||||||  || ||||||||||||| ||| ||||  |||||  | || | || |||||||||    
T  12731529 gagaaatgttagcaacacatattctaatacacacttctcaacacattctctttgattggttaaaattcacatgagacccatcaaatttatttgggaccca 12731628  T
Q  192 tataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
     ||  ||||||||  | |||||| | ||||||||||||||| |||| |||||| ||| ||| |||||    
T  12731629 cat-gatttggtggaagctatgtaaattttaaccaatcaaaaagagtgtgttggaaaatgtgtgtta 12731694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 211 - 266
Target Start/End: Original strand, 17600698 - 17600753
Alignment:
Q  211 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    ||||||||||||||||||||||||||   ||||||||| ||| |||||||| ||||    
T  17600698 atgtgagttttaaccaatcaaagagaatatgttgaaaaatgtttgttaaaatgtgt 17600753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 4033086 - 4033140
Alignment:
Q  212 tgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    ||||| ||||||||||||||||| || || ||||||||||| |||||||| ||||    
T  4033086 tgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgttaaaatgtgt 4033140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 17389991 - 17390045
Alignment:
Q  212 tgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    ||||| |||||||||||||||||||| |||||||||| ||  |||||||| ||||    
T  17389991 tgtgaattttaaccaatcaaagagagagtgttgaaaattgcgtgttaaaatgtgt 17390045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 31989248 - 31989170
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagtttt 221  Q
    ||||||| ||||| ||  |||| || |||| ||||||||||||| || |||||||||| ||||||| ||||||| ||||    
T  31989248 tttgatttgttaaaatatacatggatcccaacaaatcatgtgggtccaatataaattttgtgtgacttatgtgaatttt 31989170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 479787 - 479863
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaat 178  Q
    |||||||||| ||||||| | ||| ||||||| ||||| |  |||||||||||| ||| ||||||| ||||||||||    
T  479787 tagcaacacaaattttaataaacatttttcaaaacactttatttgattggttaaaattcacattgatcccaccaaat 479863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 1473675 - 1473606
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    ||||||||  ||| |||||| ||||||||||||||||| || |||||||||| ||| | |||||| ||||    
T  1473675 atttggtggaacccatgtgaattttaaccaatcaaagatagtgtgttgaaaaatgtgtattaaaatgtgt 1473606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 24691967 - 24691922
Alignment:
Q  96 agaaatattagcaacacatattttaacatacacttttcaacacact 141  Q
    |||||| ||||||||||| ||||||||| ||||||| |||||||||    
T  24691967 agaaatgttagcaacacacattttaacacacactttccaacacact 24691922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 24110102 - 24110066
Alignment:
Q  218 ttttaaccaatcaaagagagcgtgttgaaaagtgtat 254  Q
    |||||||||||||||||||| |||||||||| |||||    
T  24110102 ttttaaccaatcaaagagagtgtgttgaaaaatgtat 24110066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 104 - 266
Target Start/End: Complemental strand, 21434028 - 21433864
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||||||| ||||||||||||||||||||||||||| |  |||||||||||| ||| |||| || |||||||||||||||||| | ||||||||||||    
T  21434028 tagcaacacacattttaacatacacttttcaacacactctcattgattggttaaaattcacatggatcccaccaaatcatgtgggtctcatataaatttg 21433929  T
Q  202 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    ||| | |  |||||| |||||||||||||||||||| |||||||||| ||| |||||||| ||||    
T  21433928 gtgggtctcatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgttaaaatgtgt 21433864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 1338419 - 1338555
Alignment:
Q  106 gcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgt 205  Q
    |||||||||||||||||| ||| |||||||||| || ||||||||||||| | | |||| || ||||||||||  | ||||||||||||||||||| ||     
T  1338419 gcaacacatattttaacacacatttttcaacactctctttgattggttaaaaatcacatggatcccaccaaattgtatgggacccatataaatttgatgg 1338518  T
Q  206 gacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
     |||||||||| | |||||||||||||||||| ||||    
T  1338519 aacctatgtgaatcttaaccaatcaaagagagtgtgt 1338555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 266
Target Start/End: Original strand, 15134541 - 15134715
Alignment:
Q  94 tgagaaatattagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatcatgtgggaccca 191  Q
    ||||||||  ||| |||||| ||||||||| ||| |||||||||||  || ||| ||||||||| ||| |||| |  || || ||||||| |||| ||||    
T  15134541 tgagaaatgctagtaacacaaattttaacacacatttttcaacacattctcttttattggttaaaattcacatgggtccgactaaatcatttgggtccca 15134640  T
Q  192 tataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    ||||||||||||| | || |||||| ||||||||||||| ||| || ||||||||||||||  ||||||| ||||    
T  15134641 tataaatttggtgagtcccatgtgaattttaaccaatcacagacagtgtgttgaaaagtgtgcgttaaaatgtgt 15134715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 2247693 - 2247576
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacct-atgtgagttttaaccaatcaaagagagcgtg 241  Q
    ||||||||||||| |||||||| || |||||||||||||||||| | ||||||||||| ||| || ||  ||||| |||||| |||| |||||||| |||    
T  2247693 tttgattggttaaaattaacatggatcccaccaaatcatgtgggtcgcatataaattt-gtg-gatctcgtgtgaattttaatcaattaaagagagtgtg 2247596  T
Q  242 ttgaaaagtgtatgttaaaa 261  Q
    ||||||||||| ||||||||    
T  2247595 ttgaaaagtgtgtgttaaaa 2247576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 108 - 266
Target Start/End: Original strand, 21433861 - 21434021
Alignment:
Q  108 aacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatc-atgtgggacccatataaatttggtg 204  Q
    |||||| ||||||||| ||| ||||||||||||| |  |||||||||||| ||| ||||    ||||||||||  || || |||||| || | |||||||    
T  21433861 aacacacattttaacacacatttttcaacacactctctttgattggttaaaattcacatgagacccaccaaatttatatgagacccacatga-tttggtg 21433959  T
Q  205 tgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
     || | |||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  21433960 ggatccatgtgaattttaaccaatcaatgagagtgtgttgaaaagtgtatgttaaaatgtgt 21434021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 119 - 232
Target Start/End: Original strand, 33414002 - 33414117
Alignment:
Q  119 taacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtga 216  Q
    ||||| ||||||||||||||||| |  |||||||||||| ||| |||| || |||||||||||| ||||| || |||||||||||||| | || || |||    
T  33414002 taacacacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaatcacgtgggtcctatataaatttggtgggtcccatatga 33414101  T
Q  217 gttttaaccaatcaaa 232  Q
     |||||| ||||||||    
T  33414102 attttaatcaatcaaa 33414117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 96 - 252
Target Start/End: Original strand, 9023886 - 9024044
Alignment:
Q  96 agaaatattagcaacacatattttaacatacacttttcaacacac--tgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccata 193  Q
    |||||| ||| ||| ||| |||||||||||||||||| |||||||  | ||||||||| ||| ||| ||||    |||| ||||||||||| | ||||||    
T  9023886 agaaatgttaacaatacacattttaacatacactttttaacacacgttttttgattgggtaaaattcacatgagtcccaacaaatcatgtgagtcccata 9023985  T
Q  194 taaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    ||||||  ||| | || |||| | ||||||| |||||||||||  ||||||||||||||    
T  9023986 taaattgagtgggtcccatgtaaattttaacaaatcaaagagaatgtgttgaaaagtgt 9024044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 107 - 266
Target Start/End: Original strand, 32286221 - 32286379
Alignment:
Q  107 caacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtg 206  Q
    ||||| ||||||||| ||||| |||||||||| ||  ||||||  |||| ||| ||||    ||||||||||||||||| | | |||||||||||||  |    
T  32286221 caacaaatattttaagatacatttttcaacactcttattgattctttaaaattcacatgagtcccaccaaatcatgtgg-atcaatataaatttggttgg 32286319  T
Q  207 acctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    | | |||||| ||||||||||| ||| |||| |||||||||| | |||||| ||||||||    
T  32286320 atccatgtgaattttaaccaataaaaaagagtgtgttgaaaaatatatgttgaaacgtgt 32286379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 107 - 257
Target Start/End: Original strand, 52374904 - 52375056
Alignment:
Q  107 caacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtg 204  Q
    ||||||| ||||||||| |||||||||||||||  || |||||| | |||| ||| |||| || | |||||||| ||||||| ||| |||||||||| ||    
T  52374904 caacacacattttaacacacacttttcaacacactctctttgatagattaaaattcacatggatctcaccaaattatgtgggtcccgtataaatttgatg 52375003  T
Q  205 tgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
       |  |||||| ||||||||||||||| |||| || ||||||| ||| ||||    
T  52375004 gatcaaatgtgaattttaaccaatcaaaaagagtgtattgaaaaatgtgtgtt 52375056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 16457945 - 16458059
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
    ||||||||||||| ||| |||| || |||| ||||||||||||| ||||||||||||||||| | |  |  |||  ||||| | ||||||||||| ||||    
T  16457945 tttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttggtgggtctcacatga-atttaatcgatcaaagagagtgtgt 16458043  T
Q  243 tgaaaagtgtatgtta 258  Q
    |||||||||| |||||    
T  16458044 tgaaaagtgtgtgtta 16458059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 7403140 - 7403226
Alignment:
Q  175 aaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    |||||||||||||| | |||||||||  || ||   |||||| |||||||||||||||||||| |||||||| ||||| ||||||||    
T  7403140 aaatcatgtgggactcgtataaatttcatgggaatcatgtgaattttaaccaatcaaagagagtgtgttgaatagtgtgtgttaaaa 7403226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 33414063 - 33414002
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
    |||||||| || | |||||| |||||||||||||||||||| |||||||||||||| |||||    
T  33414063 atttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta 33414002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 171 - 266
Target Start/End: Original strand, 3688623 - 3688719
Alignment:
Q  171 caccaaatcatgtgggacccatataaatttgg-tgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||||||||||| ||||||||| ||| | || | |  |||||| ||||||||||||||||| || |||||| ||||||||| |||||| ||||    
T  3688623 caccaaatcatgtgggtcccatataattttagatgggtcacatgtgaattttaaccaatcaaagaaagtgtgttggaaagtgtatattaaaatgtgt 3688719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 250
Target Start/End: Original strand, 19382302 - 19382424
Alignment:
Q  125 acacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagtttta 222  Q
    ||||||| ||||||||| |  |||||||||||| ||| |||| || ||||||||||||||||||     ||||||||||| | |||| || | | |||||    
T  19382302 acactttccaacacactctatttgattggttaaaattcacatggatcccaccaaatcatgtggg-----tataaatttggcgggacccatataaatttta 19382396  T
Q  223 accaatcaaagagagcgtgttgaaaagt 250  Q
    |||||||||| |||| ||||| ||||||    
T  19382397 accaatcaaaaagagtgtgttaaaaagt 19382424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 248
Target Start/End: Original strand, 31758677 - 31758817
Alignment:
Q  108 aacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgt 205  Q
    |||||| |||||||||  ||||||||||||||  || ||||||||||||| ||| ||||   | ||||||||||||||||| | ||| |||||||||||     
T  31758677 aacacacattttaaca--cacttttcaacacattctatttgattggttaaaattcacataagctccaccaaatcatgtgggtctcatgtaaatttggtgg 31758774  T
Q  206 gacctatgtgagttttaaccaatcaaagagagcgtgttgaaaa 248  Q
    | |  ||  || |||||| ||||||||||||  ||||||||||    
T  31758775 gtctcataagaattttaatcaatcaaagagaatgtgttgaaaa 31758817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 45654125 - 45654067
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    ||||||||||||| ||| |||| || |||| ||||||||||||| ||||||||||||||    
T  45654125 tttgattggttaaaattcacatggatcccatcaaatcatgtgggtcccatataaatttg 45654067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 52374978 - 52374908
Alignment:
Q  196 aatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    ||||||||| || | |||||| |||||| | ||||||||||| |||||||||||||| |||||||| ||||    
T  52374978 aatttggtgagatccatgtgaattttaatctatcaaagagagtgtgttgaaaagtgtgtgttaaaatgtgt 52374908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 7403238 - 7403176
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacat 164  Q
    |||||||||||||||||||| ||||| |||||||||  || ||||||||||||| ||| ||||    
T  7403238 tagcaacacatattttaacacacactattcaacacactctctttgattggttaaaattcacat 7403176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 41840660 - 41840589
Alignment:
Q  190 catataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    |||||||||||||||  ||| |||| | |||||| ||||||||||||| |||||||||| | | ||||||||    
T  41840660 catataaatttggtggaacccatgtaaattttaatcaatcaaagagagtgtgttgaaaaatatgtgttaaaa 41840589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 993229 - 993291
Alignment:
Q  130 tttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccat 192  Q
    |||||||||||| ||||||||||||| ||| ||||    |||||||||||||||||| |||||    
T  993229 tttcaacacactctttgattggttaaaattcacatgagtcccaccaaatcatgtgggtcccat 993291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 1338492 - 1338429
Alignment:
Q  196 aatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    ||||||||| || | |||||| |||||||||||||||||||  |||||||||| ||| ||||||||    
T  1338492 aatttggtgggatccatgtgatttttaaccaatcaaagaga--gtgttgaaaaatgtgtgttaaaa 1338429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 141
Target Start/End: Original strand, 2247568 - 2247601
Alignment:
Q  108 aacacatattttaacatacacttttcaacacact 141  Q
    |||||||||||||||| |||||||||||||||||    
T  2247568 aacacatattttaacacacacttttcaacacact 2247601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 2324811 - 2324844
Alignment:
Q  171 caccaaatcatgtgggacccatataaatttggtg 204  Q
    |||||||||||||||| |||||||||||||||||    
T  2324811 caccaaatcatgtgggtcccatataaatttggtg 2324844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 16577344 - 16577401
Alignment:
Q  211 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgtat 268  Q
    |||||||||||||||||||||| |||   | || ||||||||||||||||| ||||||    
T  16577344 atgtgagttttaaccaatcaaatagaatatattaaaaagtgtatgttaaaatgtgtat 16577401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 34252008 - 34252065
Alignment:
Q  107 caacacatattttaacatacacttttcaacacact-gtttgattggttaagattaaca 163  Q
    ||||||||||||||||||||||||||||| || ||  ||| ||||||||| |||||||    
T  34252008 caacacatattttaacatacacttttcaaaacgctcttttaattggttaaaattaaca 34252065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 34252081 - 34252017
Alignment:
Q  196 aatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    ||||||||| ||| | ||| | ||||||||||| ||| ||||||| ||||||||||||||||||||    
T  34252081 aatttggtgggacttgtgttaattttaaccaattaaa-agagcgttttgaaaagtgtatgttaaaa 34252017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 42516598 - 42516565
Alignment:
Q  106 gcaacacatattttaacatacacttttcaacaca 139  Q
    |||||||||||||||||| |||||||||||||||    
T  42516598 gcaacacatattttaacacacacttttcaacaca 42516565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 8402631 - 8402485
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggt 203  Q
    |||||||||| ||||||||| ||||||||||||||||| ||||||||||||| | |  ||| | ||||||||||||||||||||||||||| |||||| |    
T  8402631 tagcaacacacattttaacacacacttttcaacacactatttgattggttaaaactctcatgggccccaccaaatcatgtgggacccatattaatttgtt 8402532  T
Q  204 gtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    | |||| |||||| |||||| |||||||  |||| ||||||||||||||    
T  8402531 gggacccatgtgaattttaaacaatcaa--agagtgtgttgaaaagtgt 8402485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 34504517 - 34504377
Alignment:
Q  119 taacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtga 216  Q
    ||||||||||||||||||||||| |||  |||||||||| |||  ||| |  | |||||||||||||||| ||||||||||||||||| |  | ||||||    
T  34504517 taacatacacttttcaacacactttttttgattggttaaaattcgcatgggtcacaccaaatcatgtgggtcccatataaatttggtgagttccatgtga 34504418  T
Q  217 gttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
     ||||||||||||||| |||| |||||||||| | ||||||    
T  34504417 attttaaccaatcaaaaagagtgtgttgaaaaatatatgtt 34504377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 2288584 - 2288733
Alignment:
Q  105 agcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttgg 202  Q
    ||||||||||||| ||||| |||||||  |||||||| |  |||||||||||| ||| |||| |    ||||||||||  |||| ||||||||||||||     
T  2288584 agcaacacatattctaacacacactttcgaacacactctctttgattggttaaaatttacatgggtttcaccaaatcacatgggtcccatataaatttga 2288683  T
Q  203 tgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    ||   || |||||| ||||||||||||||||||||  |||||||||||||    
T  2288684 tggatcccatgtgaattttaaccaatcaaagagagattgttgaaaagtgt 2288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 171 - 261
Target Start/End: Original strand, 27072868 - 27072958
Alignment:
Q  171 caccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    |||||||||||||||  ||||||||||||||||| | || |||| | ||||||||||||||| |||  |||||||||||||| ||||||||    
T  27072868 caccaaatcatgtggatcccatataaatttggtgggtccaatgtaaattttaaccaatcaaaaagaatgtgttgaaaagtgtgtgttaaaa 27072958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 17893405 - 17893308
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||||||||||| |||||||||| |||| |||  ||  |||||||||||||| ||||||||||||  |||| |||| |||||||||||| ||||    
T  17893405 cccaccaaatcatgtgagacccatatagatttagtggaactcatgtgagttttaactaatcaaagagagtctgttaaaaaatgtatgttaaaatgtgt 17893308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 258
Target Start/End: Original strand, 35586454 - 35586543
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
    |||||||||||||||| | | ||||||||||||||| | ||||||||| |||||| |||| |||||||  |||||||||||||| |||||    
T  35586454 cccaccaaatcatgtgagtctcatataaatttggtgggtcctatgtgaattttaatcaattaaagagaatgtgttgaaaagtgtgtgtta 35586543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 104 - 266
Target Start/End: Complemental strand, 40694768 - 40694604
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgtttg--attggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    ||||||||||  |||||||| ||||||||||| ||||| |||   ||| ||||| ||| |||| |  |||||||||||||||||| || ||||| |||||    
T  40694768 tagcaacacacgttttaacacacacttttcaatacactcttttttattagttaaaattcacatgggtcccaccaaatcatgtgggtcctatatagatttg 40694669  T
Q  202 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    ||| | |  |||| | ||||||||||||||| |||  |||||| ||| ||| |||||||||||||    
T  40694668 gtgggtcgcatgttaattttaaccaatcaaatagattgtgttgtaaaatgtgtgttaaaacgtgt 40694604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 266
Target Start/End: Original strand, 20271006 - 20271161
Alignment:
Q  118 ttaacatacacttttcaacacactgtttgattggttaaga--ttaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacc-----t 210  Q
    |||||| ||| |||||||||| || ||||||||||||| |  || |||| || |||||||||||||||||| |||||||||||||  || | ||          
T  20271006 ttaacacacatttttcaacactctctttgattggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatataaattttatgggtcccaaatc 20271105  T
Q  211 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||| ||||||| |||||||||||| |||||||||||||  |||||||| ||||    
T  20271106 atgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgt 20271161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 266
Target Start/End: Original strand, 21057634 - 21057789
Alignment:
Q  118 ttaacatacacttttcaacacactgtttgattggttaaga--ttaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacc-----t 210  Q
    |||||| ||| |||||||||| || ||||||||||||| |  || |||| || |||||||||||||||||| |||||||||||||  || | ||          
T  21057634 ttaacacacatttttcaacactctctttgattggttaaaaaattcacatggatcccaccaaatcatgtgggtcccatataaattttatgggtcccaaatc 21057733  T
Q  211 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||| ||||||| |||||||||||| |||||||||||||  |||||||| ||||    
T  21057734 atgtgaattttaactaatcaaagagagtgtgttgaaaagtgcgtgttaaaatgtgt 21057789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 27072977 - 27072894
Alignment:
Q  97 gaaatattagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaat 178  Q
    |||||| |||||||||||||||||||| |||||||||||||||  || ||||||||||||| ||| ||||||  ||||||||||    
T  27072977 gaaatactagcaacacatattttaacacacacttttcaacacattctttttgattggttaaaatttacattggacccaccaaat 27072894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 120 - 258
Target Start/End: Original strand, 34504377 - 34504517
Alignment:
Q  120 aacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatc-atgtgggacccatataaatttggtgtgacctatgtga 216  Q
    |||||| | ||||||||||||| |||  |||||||||| ||| |||| || | ||||||||  || ||||||||| || | |||||||||||| ||| ||    
T  34504377 aacatatatttttcaacacactctttttgattggttaaaattcacatggaactcaccaaatttatatgggacccacatga-tttggtgtgacccatgcga 34504475  T
Q  217 gttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
     ||||||||||||||| | || ||||||||||||||||||||    
T  34504476 attttaaccaatcaaaaaaagtgtgttgaaaagtgtatgtta 34504517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 266
Target Start/End: Original strand, 40694597 - 40694761
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatc-atgtgggacccatataaattt 200  Q
    ||||||||||  |||||||| ||| ||| |||||||  || ||||||||||||| ||||||||    ||||||||||| || | ||||||| || | |||    
T  40694597 tagcaacacacgttttaacacacattttacaacacaatctatttgattggttaaaattaacatgcgacccaccaaatctatataggacccacatga-ttt 40694695  T
Q  201 ggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||| |||| |||||| ||||||| ||| ||| |||| || ||||||||||| |||||||||||||    
T  40694696 ggtgggacccatgtgaattttaactaataaaaaagagtgtattgaaaagtgtgtgttaaaacgtgt 40694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 257
Target Start/End: Complemental strand, 40176034 - 40175893
Alignment:
Q  119 taacatacacttttcaacacactg--tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtga 216  Q
    ||||| |||||||| ||||||||   ||| ||||||||| ||| |||| |  |||||||||| ||||||| |||||||||||||||||   || ||||||    
T  40176034 taacacacactttttaacacactccttttaattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggtggatcccatgtga 40175935  T
Q  217 gttttaaccaat-caaagagagcgtgttgaaaagtgtatgtt 257  Q
     |||||||||||  ||| | || |||||||||||||| ||||    
T  40175934 attttaaccaataaaaaaaaagtgtgttgaaaagtgtgtgtt 40175893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 42072637 - 42072779
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatat 194  Q
    |||||||  ||||||| || ||||||||| ||||||    |||| || ||||||||||||| ||| |||| |  ||||||||||||| |||| | |||||    
T  42072637 gagaaatgctagcaacgcacattttaacacacacttcaacacactctctttgattggttaacattcacatgggtcccaccaaatcatatgggtctcatat 42072736  T
Q  195 aaatttggtgtgacctatgtgagttttaaccaatcaaagagag 237  Q
    |||||||||| | || |||| | ||||||||||| ||| ||||    
T  42072737 aaatttggtgggtcccatgtaaattttaaccaataaaaaagag 42072779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 40696213 - 40696336
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
    ||||||| ||||| ||| |||| |  ||||||||||||||||||  | ||||| |||||||| | |  |||| | ||||||||||| |||||||  ||||    
T  40696213 tttgattagttaaaattcacatgggtcccaccaaatcatgtgggttctatatagatttggtgggtcgcatgttaattttaaccaatgaaagagattgtgt 40696312  T
Q  243 tgaaaagtgtatgttaaaacgtgt 266  Q
    || ||| ||| |||||||||||||    
T  40696313 tgcaaaatgtgtgttaaaacgtgt 40696336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 40566535 - 40566604
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||| |||  |||||| ||||||||||||||| ||||||||||||||| | | |||||||| ||||    
T  40566535 atttggtgagactcatgtgaattttaaccaatcaaaaagagcgtgttgaaaaatatgtgttaaaatgtgt 40566604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 4994308 - 4994257
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgtttgattggttaa 155  Q
    |||||||||| ||||||||| ||| |||| |||||||| |||||||||||||    
T  4994308 tagcaacacacattttaacacacaatttttaacacactctttgattggttaa 4994257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 20271177 - 20271131
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacacact 141  Q
    ||||||| ||||||||||| |||||||||  ||||||||||||||||    
T  20271177 gagaaatgttagcaacacacattttaacacgcacttttcaacacact 20271131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 21057805 - 21057759
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacacact 141  Q
    ||||||| ||||||||||| |||||||||  ||||||||||||||||    
T  21057805 gagaaatgttagcaacacacattttaacacgcacttttcaacacact 21057759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 38835053 - 38835119
Alignment:
Q  171 caccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagag 237  Q
    |||||||||||| ||| ||||||||||||||||     |||||||| ||||||||||||||| ||||    
T  38835053 caccaaatcatgcgggtcccatataaatttggtagattctatgtgaattttaaccaatcaaaaagag 38835119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 246
Target Start/End: Complemental strand, 42072792 - 42072671
Alignment:
Q  125 acacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatc-atgtgggacccatataaatttggtgtgacctatgtgagttttaa 223  Q
    |||| ||| ||||| || ||| ||||||||| ||| |||| |  ||||||||||  || || ||||||||| | ||||||| |||| |||||| | ||||    
T  42072792 acacattttaacactcttttttattggttaaaatttacatgggacccaccaaatttatatgagacccatatga-tttggtgggacccatgtgaatgttaa 42072694  T
Q  224 ccaatcaaagagagcgtgttgaa 246  Q
    |||||||||||||| ||||||||    
T  42072693 ccaatcaaagagagtgtgttgaa 42072671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 3311582 - 3311662
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaag 249  Q
    ||||| |||| |||||| |||||||| ||||| |||  ||  |||||| |||||||| ||||||||||| | |||||||||    
T  3311582 cccactaaattatgtggaacccatatcaatttagtggaactgatgtgatttttaaccgatcaaagagagtgcgttgaaaag 3311662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 26018573 - 26018513
Alignment:
Q  144 ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtg 204  Q
    |||||||||||| ||| |||| |  |||| ||||| ||||||| |||||||||||||||||    
T  26018573 ttgattggttaaaattcacatgggtcccatcaaattatgtgggtcccatataaatttggtg 26018513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 104 - 266
Target Start/End: Complemental strand, 36480862 - 36480698
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaaca--cactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||||||| ||||||||| |||||||||||||  | || ||||||||| ||| ||| |||| |  |||||||||||||||||| ||||||||||||||    
T  36480862 tagcaacacacattttaacacacacttttcaacattctctctttgattggctaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttg 36480763  T
Q  202 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
     || | || |||||| |||||||||||||||||||| |||||| |||| || |||||||| ||||    
T  36480762 ttgggtcccatgtgaattttaaccaatcaaagagagtgtgttggaaagggtgtgttaaaatgtgt 36480698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 94 - 257
Target Start/End: Original strand, 40554015 - 40554177
Alignment:
Q  94 tgagaaatattagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccata 193  Q
    ||||||||| |||||||||| ||||||||| ||  |||| || || || ||  |||| |||| ||| |||| |  |||||||||||||||| ||||||||    
T  40554015 tgagaaatactagcaacacacattttaacacact-ttttaaaaactctcttcaattgattaaaattcacatgggtcccaccaaatcatgtgagacccata 40554113  T
Q  194 taaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
    |||||||| ||  ||  ||||||||||||||||||||||||||| || ||||||| ||| ||||    
T  40554114 taaatttgatggaactcatgtgagttttaaccaatcaaagagagtgtattgaaaattgtgtgtt 40554177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 143 - 236
Target Start/End: Original strand, 13540201 - 13540294
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagaga 236  Q
    ||||||||||| | | |||||| |  |||||||||||||||| |||| |||||||||||||| ||||||| ||| |||||||||||||||||||    
T  13540201 tttgattggtttaaactaacatggctcccaccaaatcatgtgagacctatataaatttggtgggacctatatgaattttaaccaatcaaagaga 13540294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 143 - 248
Target Start/End: Complemental strand, 35357431 - 35357326
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
    ||||||||||||| ||| |||| |  || ||||||||||||  | |||||||||||||||||   |  ||||||||||||||||||||||||||| ||||    
T  35357431 tttgattggttaaaattcacatgggtcctaccaaatcatgtaagtcccatataaatttggtggttcacatgtgagttttaaccaatcaaagagagtgtgt 35357332  T
Q  243 tgaaaa 248  Q
    ||||||    
T  35357331 tgaaaa 35357326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 266
Target Start/End: Original strand, 36480680 - 36480855
Alignment:
Q  93 atgagaaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatc-atgtgggacc 189  Q
    |||||||||  || ||||||| ||||||||| || |||| ||||||||| |  |||||||||||| ||| |||| |  |||| |||||  || |||||||    
T  36480680 atgagaaatgctaacaacacacattttaacacaccctttccaacacactctctttgattggttaaaattcacatgggacccaacaaatttatatgggacc 36480779  T
Q  190 catataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    || || | ||||||| |||| |||||| ||||| ||||||||||||||  ||||||||||||| |||||||| ||||    
T  36480780 cacatga-tttggtgggacccatgtgaattttagccaatcaaagagagaatgttgaaaagtgtgtgttaaaatgtgt 36480855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 261
Target Start/End: Complemental strand, 14345239 - 14345147
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    |||||||||||||||||| ||||||||||||||||| | |  |||||  ||||||||||||||||| || |||||||||| | | ||||||||    
T  14345239 cccaccaaatcatgtgggtcccatataaatttggtgggtctcatgtggattttaaccaatcaaagaaagtgtgttgaaaaatatgtgttaaaa 14345147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 3901572 - 3901635
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaa 260  Q
    |||||||| |||| |||||| |||||||||||||||||||| |||||||||||||| |||||||    
T  3901572 atttggtgggacccatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgttaaa 3901635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 95 - 237
Target Start/End: Original strand, 1753291 - 1753435
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccat 192  Q
    ||||||| ||||||| || || ||||||||||||||||||| | ||| |||  |||||||||| ||| ||||      || ||||||||||||  |||||    
T  1753291 gagaaatgttagcaatacgtactttaacatacacttttcaatatactctttttgattggttaaaatttacatgagtttcatcaaatcatgtggttcccat 1753390  T
Q  193 ataaatttggtgtgacctatgtgagttttaaccaatcaaagagag 237  Q
    |||||||| ||| ||| |||||||  |||||||||||||||||||    
T  1753391 ataaattttgtgagacgtatgtgaactttaaccaatcaaagagag 1753435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 29955022 - 29955177
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||||| ||||||||| | | ||||||||||||||| |||  |||||||||| ||| |||| |  |||| ||||||||||||| |||| |||||||||    
T  29955022 tagcaacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttg 29955121  T
Q  202 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
     ||   || || ||| ||||||| ||||||  |||| || ||||||||||| ||||    
T  29955122 atggatcccatatgaattttaactaatcaagaagagtgtattgaaaagtgtgtgtt 29955177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 257
Target Start/End: Original strand, 30004176 - 30004331
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||||| ||||||||| | | ||||||||||||||| |||  |||||||||| ||| |||| |  |||| ||||||||||||| |||| |||||||||    
T  30004176 tagcaacatatattttaatacatacttttcaacacactttttttgattggttaaaattcacatgggtcccatcaaatcatgtgggtcccacataaatttg 30004275  T
Q  202 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
     ||   || || ||| ||||||| ||||||  |||| || ||||||||||| ||||    
T  30004276 atggatcccatatgaattttaactaatcaagaagagtgtattgaaaagtgtgtgtt 30004331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 799306 - 799380
Alignment:
Q  183 tgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
    |||| |||||||||||| |||| ||||||||| | |||||||||||||||||||  || ||||||||||| ||||    
T  799306 tgggtcccatataaattaggtgggacctatgtcaattttaaccaatcaaagagaaagtattgaaaagtgtgtgtt 799380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 248
Target Start/End: Complemental strand, 3901635 - 3901508
Alignment:
Q  117 tttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgt 214  Q
    ||||||| ||||||||||||||||| |  |||||||||||| ||| |||| |  ||||||||||||||||     || || | ||||||| |||| ||||    
T  3901635 tttaacacacacttttcaacacactctctttgattggttaaaattcacatgggtcccaccaaatcatgtg-----cacatga-tttggtgggacccatgt 3901542  T
Q  215 gagttttaaccaatcaaagagagcgtgttgaaaa 248  Q
    || |||||||||||||||||||  ||||||||||    
T  3901541 gaattttaaccaatcaaagagaatgtgttgaaaa 3901508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 244
Target Start/End: Original strand, 31205394 - 31205495
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
    ||||||||||||| ||| |||| |  |  ||||||||||||||| |||||||||| |||||| | |  |||||| |||| ||||||||||||||| ||||    
T  31205394 tttgattggttaaaatttacatgggtcttaccaaatcatgtgggtcccatataaaattggtgggtctcatgtgaattttgaccaatcaaagagagtgtgt 31205493  T
Q  243 tg 244  Q
    ||    
T  31205494 tg 31205495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 19560680 - 19560768
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
    |||||||||||||||||| |||||| |||||| |||   ||  ||||  |||||||||||||||||||| |||||||||| ||| ||||    
T  19560680 cccaccaaatcatgtgggtcccatacaaatttagtggatcccttgtgctttttaaccaatcaaagagagtgtgttgaaaaatgtgtgtt 19560768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 36007511 - 36007408
Alignment:
Q  103 ttagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaattt 200  Q
    ||||||||||| |||||||||| ||||||||||||||   | ||||| ||||||| ||| ||||   ||||   |||||||||||| |||||||||||||    
T  36007511 ttagcaacacacattttaacattcacttttcaacacattttctttgagtggttaaaattcacatgagcccccataaatcatgtgggccccatataaattt 36007412  T
Q  201 ggtg 204  Q
    ||||    
T  36007411 ggtg 36007408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 266
Target Start/End: Original strand, 35415036 - 35415117
Alignment:
Q  185 ggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||||||| |||||||||||||||| || ||||||| ||| ||| ||    ||||||||||||| |||||||| ||||    
T  35415036 ggacccatataattttggtgtgacctatgcgaattttaacaaataaaaaagtatatgttgaaaagtgtgtgttaaaatgtgt 35415117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 37189195 - 37189292
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||||||||||| ||||| |||| |||| |||  |   |||||| ||||||||||||||||||||  |||| |||| ||||| |||||| ||||    
T  37189195 cccaccaaatcatgtgagacccgtatagatttagtggaattcatgtgaattttaaccaatcaaagagagtctgttaaaaaatgtatattaaaatgtgt 37189292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 254
Target Start/End: Complemental strand, 51541333 - 51541248
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtat 254  Q
    |||||||||||||||||| || |||||  ||||||| | |  |||||||||||||||||||||| | || || ||||||| |||||    
T  51541333 cccaccaaatcatgtgggtcctatatacttttggtgggtcacatgtgagttttaaccaatcaaaaatagtgtattgaaaaatgtat 51541248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 139
Target Start/End: Original strand, 26986276 - 26986312
Alignment:
Q  103 ttagcaacacatattttaacatacacttttcaacaca 139  Q
    ||||||||||||||||||||||| |||||||||||||    
T  26986276 ttagcaacacatattttaacatatacttttcaacaca 26986312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 257
Target Start/End: Original strand, 32880985 - 32881136
Alignment:
Q  108 aacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgt 205  Q
    |||||| |||||| || ||| ||||||||| ||| |  |||||||||||| ||| |||| |  ||||| |||||||||||  |||||||||||||||||     
T  32880985 aacacacattttatcacacatttttcaacatactctccttgattggttaatattcacatgggtcccacaaaatcatgtggatcccatataaatttggtgg 32881084  T
Q  206 gacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
    | |   ||| | ||||||||||| ||| |||  |||||||||| ||| ||||    
T  32881085 gtctcgtgtaaattttaaccaataaaaaagattgtgttgaaaaatgtgtgtt 32881136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 244
Target Start/End: Complemental strand, 45332629 - 45332557
Alignment:
Q  172 accaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttg 244  Q
    ||||||||||||||| |||||||||||||||||    | |||||| ||||||||||| ||||| || ||||||    
T  45332629 accaaatcatgtgggtcccatataaatttggtggattccatgtgaattttaaccaattaaagaaagtgtgttg 45332557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 155
Target Start/End: Original strand, 14345126 - 14345188
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacacac--tgtttgattggttaa 155  Q
    ||||||| ||||||||||||||||||||| | | ||||||||||||  | |||||||||||||    
T  14345126 gagaaatgttagcaacacatattttaacacatatttttcaacacactttctttgattggttaa 14345188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 40117777 - 40117860
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    |||||||||||||||||| ||||  |||||||||   |||| || ||| ||||||||||| ||  |||| ||||||||||||||    
T  40117777 cccaccaaatcatgtgggtcccacttaaatttggcaggacccatttgaattttaaccaatgaataagagtgtgttgaaaagtgt 40117860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 1458515 - 1458573
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacacactgtttgattggtt 153  Q
    ||||||| | |||||| |||||| ||||| ||| ||||||||||||| |||||||||||    
T  1458515 gagaaatgtcagcaacgcatattctaacacacaattttcaacacactctttgattggtt 1458573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 11532549 - 11532455
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagag 237  Q
    ||||||||||||| ||| |||| |   ||||||||||||||||  ||||||||||||| ||| | | | ||||| |||| |||||||||| ||||    
T  11532549 tttgattggttaaaattcacatgggttccaccaaatcatgtggatcccatataaatttagtgggtcttgtgtgaattttgaccaatcaaaaagag 11532455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 185
Target Start/End: Complemental strand, 16993416 - 16993339
Alignment:
Q  108 aacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgg 185  Q
    |||||| ||| ||| ||||||||| ||||||||| ||| ||||||||| | | | || || |||||||||||||||||    
T  16993416 aacacacattctaatatacactttccaacacactctttaattggttaacagtcatatggatcccaccaaatcatgtgg 16993339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 31205429 - 31205360
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||  |||| |||| | |||||||||||||||||||| |||||| ||| | | |||||||||||||    
T  31205429 atttggtaagacccatgtaaattttaaccaatcaaagagagtgtgttggaaaatatgtgttaaaacgtgt 31205360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 257
Target Start/End: Original strand, 11532514 - 11532574
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
    ||||||||  ||| |||||| |||||||||||||||||||| |||||  ||||||| ||||    
T  11532514 atttggtggaacccatgtgaattttaaccaatcaaagagagtgtgttagaaagtgtgtgtt 11532574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 34437623 - 34437745
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
    ||||||||||||| ||| |||| |  |||||||||||||||||||||||||||| ||||| | |||| |||||| |||||||||||||||||||| ||||    
T  34437623 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggacccatataa-tttggggggacccatgtgaattttaaccaatcaaagagagtgtgt 34437721  T
Q  243 tgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||||  |||||||| ||||    
T  34437722 tgaaaagtgcgtgttaaaatgtgt 34437745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 2542816 - 2542698
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
    ||||||||||||| ||| |||| |   |||||||||||||||||  |||||||||||||||| | |  |||| | |||||||||||||||||||| ||||    
T  2542816 tttgattggttaaaattcacatggcttccaccaaatcatgtgggttccatataaatttggtgggcctcatgtaaattttaaccaatcaaagagagtgtgt 2542717  T
Q  243 tgaaaagtgtatgttaaaa 261  Q
    |||||| ||| ||||||||    
T  2542716 tgaaaaatgtgtgttaaaa 2542698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 40374150 - 40374057
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagag 237  Q
    ||||||||||||| ||| |||| | ||||||||||||||||||| |||||||||||||| || | ||||||||| |||||||| |||||||||||    
T  40374150 tttgattggttaaaattcacatgg-ccccaccaaatcatgtgggtcccatataaatttgatgagtcctatgtgaattttaaccgatcaaagagag 40374057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 31970208 - 31970119
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
    |||||||||||||||||| ||||||||||||||||| |  | |||||| ||||||||||||||| |||| |||||||||| ||| |||||    
T  31970208 cccaccaaatcatgtgggtcccatataaatttggtgggttcaatgtgaattttaaccaatcaaaaagagtgtgttgaaaaatgtgtgtta 31970119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 252
Target Start/End: Original strand, 40668986 - 40669063
Alignment:
Q  175 aaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    |||| |||||||||||||||||||||||||  |||  ||||| |||||||||||||||||||| ||||||||||||||    
T  40668986 aaattatgtgggacccatataaatttggtggaacccgtgtgaattttaaccaatcaaagagagtgtgttgaaaagtgt 40669063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 257
Target Start/End: Complemental strand, 34437752 - 34437598
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||||||| |||||||||  |||||||||||||||| |  |||||||||||| ||| |||| |  ||| |||||| || |||| |||| || | ||||    
T  34437752 tagcaacacacattttaacacgcacttttcaacacactctctttgattggttaaaattcacatgggtccccccaaattatatgggtcccacatga-tttg 34437654  T
Q  202 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
    ||| |||| |||||| ||||||||||||||||||||  ||||||||| ||| ||||    
T  34437653 gtgggacccatgtgaattttaaccaatcaaagagagtttgttgaaaaatgtgtgtt 34437598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 95 - 258
Target Start/End: Original strand, 7444256 - 7444421
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccat 192  Q
    |||||||  |||||||||| ||||||||| ||| ||||||||||| | |  || || |||||| ||| | |  |  |||||||||||||||||| |||||    
T  7444256 gagaaatgctagcaacacacattttaacacacatttttcaacacattttctttaatcggttaaaattcaaagagttcccaccaaatcatgtgggtcccat 7444355  T
Q  193 ataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
    |||||||||||  | || |||||| |||||||  ||||||||||  |||||||||||||| |||||    
T  7444356 ataaatttggtaggtcccatgtgaattttaactcatcaaagagaatgtgttgaaaagtgtttgtta 7444421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 248
Target Start/End: Original strand, 38663634 - 38663781
Alignment:
Q  103 ttagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaattt 200  Q
    |||| |||||| ||||||||| | | ||||||||||||| |  |||||||||||  ||| |||| |  ||||||||||||| |||| || ||||||||||    
T  38663634 ttagtaacacacattttaacacatatttttcaacacactctctttgattggttacaattcacataggtcccaccaaatcatatgggtcctatataaattt 38663733  T
Q  201 ggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaa 248  Q
    |||| | || |||||| ||||||||||| ||| ||||  |||||||||    
T  38663734 ggtgggtcccatgtgaattttaaccaattaaaaagagtatgttgaaaa 38663781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 97 - 179
Target Start/End: Original strand, 21281454 - 21281539
Alignment:
Q  97 gaaatattagcaacacatattttaacatacacttttcaacaca---ctgtttgattggttaagattaacattgaccccaccaaatc 179  Q
    |||||||||||||||||||||||||||||||||||||||||||    | ||||||||||||| ||| |||| |  |||||||||||    
T  21281454 gaaatattagcaacacatattttaacatacacttttcaacacattcttttttgattggttaaaattcacataggtcccaccaaatc 21281539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 49822578 - 49822668
Alignment:
Q  168 ccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
    ||||||||||| || |||| ||| |||||||||| || || | |||||| |||||||||||||||||||| |||||||||| ||| |||||    
T  49822578 ccccaccaaattatatgggtcccgtataaatttgatgggatccatgtgaattttaaccaatcaaagagagtgtgttgaaaaatgtgtgtta 49822668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 252
Target Start/End: Complemental strand, 40669093 - 40668934
Alignment:
Q  93 atgagaaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatc-atgtgggacc 189  Q
    |||||||||  |||||||||| |||||||||  |||||||||||||||| |  |||||||||||| ||| |||  |   |||||||||  || |||| ||    
T  40669093 atgagaaatgctagcaacacacattttaaca--cacttttcaacacactctctttgattggttaaaattcacacgggttccaccaaatttatatgggtcc 40668996  T
Q  190 catataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    || |||| |||| || |||| ||||||||||||||||||||||||||| ||||| ||| ||||    
T  40668995 cacataattttg-tgagacccatgtgagttttaaccaatcaaagagagtgtgttaaaatgtgt 40668934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 939359 - 939482
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
    ||||||||||||| ||| ||||  | | || ||||| ||||||  ||||||||||||||||||| || |||| | ||||||||||||||||| |  ||||    
T  939359 tttgattggttaaaattcacataaatctcatcaaattatgtggatcccatataaatttggtgtgtcccatgtaaattttaaccaatcaaagataatgtgt 939458  T
Q  243 tgaaaagtgtatgttaaaacgtgt 266  Q
    |||||   ||||||||||| ||||    
T  939459 tgaaatacgtatgttaaaatgtgt 939482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 21281538 - 21281473
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatc-aaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    |||||||| ||||||||||| |||||||||||| ||| |||  |||||||||||||||||||||||    
T  21281538 atttggtgggacctatgtgaattttaaccaatcaaaaaagaatgtgttgaaaagtgtatgttaaaa 21281473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 38663711 - 38663642
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||| ||||||||||| || ||||||||||||||||| |||||||||| | | |||||||| ||||    
T  38663711 atttggtgggacctatgtgaattgtaaccaatcaaagagagtgtgttgaaaaatatgtgttaaaatgtgt 38663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 39131650 - 39131583
Alignment:
Q  170 ccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagag 237  Q
    ||||||||||| ||||| ||| ||||||||||  | |||| |||||| ||||||||||||||||||||    
T  39131650 ccaccaaatcaagtgggtcccgtataaatttgaggggacccatgtgaattttaaccaatcaaagagag 39131583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 119 - 260
Target Start/End: Original strand, 31970119 - 31970262
Alignment:
Q  119 taacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaa-tcatgtgggacccatataaatttggtgtgacctatgtg 215  Q
    ||||| ||| ||||||||||||| |||  |||||||||| ||| ||||||| ||||||||| | || ||||||||| ||  |||||||| |||| || ||    
T  31970119 taacacacatttttcaacacactctttttgattggttaaaattcacattgaacccaccaaatttatatgggacccacat-gatttggtgggacccatatg 31970217  T
Q  216 agttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaa 260  Q
    |  ||||| |||| ||| |||| ||||||||||| || |||||||    
T  31970218 aaatttaatcaattaaaaagagtgtgttgaaaagcgtgtgttaaa 31970262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 224
Target Start/End: Complemental strand, 39184236 - 39184184
Alignment:
Q  172 accaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaac 224  Q
    ||||||||||||| ||||||||||||||||||  |||| |||||| |||||||    
T  39184236 accaaatcatgtgtgacccatataaatttggtaggacccatgtgaattttaac 39184184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 45563050 - 45563200
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||||||  | ||||||||||| |||  |||||||| |  |||||||||||| ||  |||| |  ||||||||||||||| |  | ||||||||||||    
T  45563050 tagcaacacccaatttaacatacattttctaacacactatctttgattggttaaaatgcacatggctcccaccaaatcatgttgatctcatataaatttg 45563149  T
Q  202 gtgtgacct-atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    ||| || || |||| | |||||||| |||||||| || ||||||||||||||    
T  45563150 gtg-gatctcatgtaaattttaaccgatcaaagaaagtgtgttgaaaagtgt 45563200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 139
Target Start/End: Original strand, 5695662 - 5695697
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacaca 139  Q
    |||||||||||||||||||| |||||||||||||||    
T  5695662 tagcaacacatattttaacacacacttttcaacaca 5695697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 23317960 - 23318026
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacct-atgtgagttttaaccaatcaaagag 235  Q
    |||||||||||||||||| ||||||||||||| ||| || || |||||| ||||||||||| ||||||    
T  23317960 cccaccaaatcatgtgggtcccatataaatttagtg-gatctcatgtgaattttaaccaattaaagag 23318026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 731416 - 731383
Alignment:
Q  171 caccaaatcatgtgggacccatataaatttggtg 204  Q
    |||||||||||||||| |||||||||||||||||    
T  731416 caccaaatcatgtgggtcccatataaatttggtg 731383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 18075217 - 18075250
Alignment:
Q  171 caccaaatcatgtgggacccatataaatttggtg 204  Q
    |||||||||||||||| |||||||||||||||||    
T  18075217 caccaaatcatgtgggtcccatataaatttggtg 18075250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 31851952 - 31852001
Alignment:
Q  211 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaa 260  Q
    |||||| ||||||| |||||||||||| |||||||||| ||||| |||||    
T  31851952 atgtgaattttaacaaatcaaagagagtgtgttgaaaaatgtatattaaa 31852001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 178
Target Start/End: Complemental strand, 49822683 - 49822607
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaat 178  Q
    |||||||||||||| ||||| ||| |||||||||||  || ||||||||||||| ||| |||| || |||| |||||    
T  49822683 tagcaacacatattataacacacatttttcaacacactctctttgattggttaaaattcacatggatcccatcaaat 49822607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 7444445 - 7444401
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacaca 139  Q
    ||||||| ||||||||||| ||| ||||| |||||||||||||||    
T  7444445 gagaaatgttagcaacacacattctaacaaacacttttcaacaca 7444401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 45215378 - 45215466
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
    ||||||||||||||| ||| || |||||||||||||  ||  || ||| |||||| |||||||| |||  |||| ||||||||| ||||    
T  45215378 cccaccaaatcatgtaggatccgtataaatttggtggaactcatatgaattttaatcaatcaaaaagaatgtgtcgaaaagtgtgtgtt 45215466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 104 - 227
Target Start/End: Complemental strand, 42094357 - 42094233
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacac--tgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||||||| ||||||||| ||||||||||||||||  | ||||||||||||| ||| |||| | ||| ||||||||||||||| ||||||||||||||    
T  42094357 tagcaacacacattttaacacacacttttcaacacacactctttgattggttaaaattcacatggtccc-accaaatcatgtgggtcccatataaatttg 42094259  T
Q  202 gtgtgacctatgtgagttttaaccaa 227  Q
    ||| | || |||||| ||||||||||    
T  42094258 gtgggtcccatgtgaattttaaccaa 42094233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 169 - 261
Target Start/End: Complemental strand, 15194623 - 15194531
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    ||||||||||||||| || |||||||| |||||||| |||| |||||| ||||||||||||||| |||| ||| |||||||||||||||||||    
T  15194623 cccaccaaatcatgtcggtcccatatatatttggtgcgacccatgtgacttttaaccaatcaaaaagagtgtgctgaaaagtgtatgttaaaa 15194531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 95 - 257
Target Start/End: Complemental strand, 25666962 - 25666798
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccat 192  Q
    |||||||  |||||||||| ||||||||||||| ||||||||||||| |  |||||  ||||| ||  |||| || ||||||||||||||| ||  ||||    
T  25666962 gagaaatgctagcaacacacattttaacatacaattttcaacacactctctttgatgtgttaaaatccacatggatcccaccaaatcatgtaggttccat 25666863  T
Q  193 ataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
    |||||||||||| | |  |||||| |||||| |||||||| |||| |||||||||| ||| ||||    
T  25666862 ataaatttggtgggtctcatgtgaattttaatcaatcaaatagagtgtgttgaaaaatgtgtgtt 25666798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 95 - 266
Target Start/End: Complemental strand, 1469891 - 1469730
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatat 194  Q
    ||||||||||| ||||||||||||||||| ||||||||          ||| ||||||||| ||| |||| || ||||| |||||||||||| |||||||    
T  1469891 gagaaatattaccaacacatattttaacacacactttt----------ttttattggttaaaattcacatggatcccacaaaatcatgtgggtcccatat 1469802  T
Q  195 aaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    ||||||||||    | |||||| ||||||||||| ||| |||| |||||||||| | | |||||||| ||||    
T  1469801 aaatttggtggattccatgtgaattttaaccaattaaatagagtgtgttgaaaaatatgtgttaaaatgtgt 1469730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 169 - 257
Target Start/End: Original strand, 42251214 - 42251302
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
    |||||||||| |||||||||| ||||||||||||||   || |||||| |||||| ||||||||||||| |||||||||||||| ||||    
T  42251214 cccaccaaattatgtgggacctatataaatttggtggatcccatgtgaattttaatcaatcaaagagagtgtgttgaaaagtgtgtgtt 42251302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 252
Target Start/End: Original strand, 33171650 - 33171733
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    |||||||||||||||  ||||  ||||||||||||| |||| ||||||  ||||||||||||||||||| ||||||||||||||    
T  33171650 cccaccaaatcatgtaagacctgtataaatttggtgggacccatgtgaaatttaaccaatcaaagagagtgtgttgaaaagtgt 33171733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 37810260 - 37810153
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
    ||||||||||||| ||| |||| |  |||||||||| |  |||| ||||||||||||||||| | || |||||| || ||||||||||||||||| ||||    
T  37810260 tttgattggttaaaattcacatgggtcccaccaaattagatgggtcccatataaatttggtgggtcccatgtgaattataaccaatcaaagagagtgtgt 37810161  T
Q  243 tgaaaagt 250  Q
    ||||||||    
T  37810160 tgaaaagt 37810153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 35715029 - 35715121
Alignment:
Q  174 caaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||||||||  |||||||| |||| || ||||||||| | |||||||||||||||||||| || ||||||||||| | |||||| ||||    
T  35715029 caaatcatgtgggtaccatataactttgatgggacctatgtaaattttaaccaatcaaagagagtgtattgaaaagtgtgtcttaaaatgtgt 35715121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 237
Target Start/End: Complemental strand, 3466542 - 3466407
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||||||| ||||||||| |||||||  |||| |  || ||||||||||||| ||| |||| |   |||| ||||| |||||| ||||||| ||||||    
T  3466542 tagcaacacacattttaacacacactttcaaacatagtctctttgattggttaaaattcacatgggttccactaaatcgtgtgggtcccatatgaatttg 3466443  T
Q  202 gtgtgacctatgtgagttttaaccaatcaaagagag 237  Q
    ||| | |  |||||| ||||||||||||||||||||    
T  3466442 gtgggtctcatgtgaattttaaccaatcaaagagag 3466407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 243
Target Start/End: Complemental strand, 17383848 - 17383774
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgtt 243  Q
    |||||||||| ||||||| |||||| |||||||||| |||| || ||| ||||||||||| |||||||| |||||    
T  17383848 cccaccaaattatgtgggtcccatagaaatttggtgggacccatatgacttttaaccaataaaagagagtgtgtt 17383774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 258
Target Start/End: Original strand, 42029342 - 42029482
Alignment:
Q  120 aacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgag 217  Q
    |||| ||| |||||||||||||||  |||||| ||||| ||| | || |  || ||||||||||| ||  ||||||||||||||||| | |  ||||||     
T  42029342 aacacacatttttcaacacactgtatttgatttgttaaaattcatatgggtcctaccaaatcatgcggaccccatataaatttggtgggtctcatgtgaa 42029441  T
Q  218 ttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
    ||||||||||| ||| | || |||||||||||||| |||||    
T  42029442 ttttaaccaataaaaaaaagtgtgttgaaaagtgtgtgtta 42029482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 42094282 - 42094350
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||| |||| |||||| |||||||||||||||||| | |||||||||||||| |||||||| ||||    
T  42094282 atttggtgggacc-atgtgaattttaaccaatcaaagagtgtgtgttgaaaagtgtgtgttaaaatgtgt 42094350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 93 - 257
Target Start/End: Complemental strand, 16209541 - 16209375
Alignment:
Q  93 atgagaaatattagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaa-tcatgtgggacc 189  Q
    |||||||||  |||||||||||||| |||||||||||||||||| ||  || ||||||  ||||| ||| | ||  | ||||||||| | || |||||||    
T  16209541 atgagaaatgctagcaacacatattctaacatacacttttcaacgcattctctttgatcagttaaaattcaaatgaaacccaccaaatttatatgggacc 16209442  T
Q  190 catataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
     | | ||||||||||  ||  |||||| ||||||||||| |||||||| |||||| ||||||| ||||    
T  16209441 gaca-aaatttggtggaactcatgtgaattttaaccaattaaagagagtgtgttggaaagtgtgtgtt 16209375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 12779587 - 12779501
Alignment:
Q  171 caccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
    |||||||||||||||| | ||||| |||||||||   || |||||| ||||||||||||||| |||  |||||||||| |||||||||    
T  12779587 caccaaatcatgtgggtcacatatgaatttggtggatcccatgtgaattttaaccaatcaaa-agaatgtgttgaaaaatgtatgtta 12779501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 252
Target Start/End: Complemental strand, 33069255 - 33069172
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    ||||| |||| ||||||| |||||||||| |||||| | |  |||||| |||||||| |||||||| || ||||||||||||||    
T  33069255 cccactaaattatgtgggtcccatataaacttggtgggtctaatgtgaattttaaccgatcaaagaaagtgtgttgaaaagtgt 33069172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 252
Target Start/End: Original strand, 37810119 - 37810280
Alignment:
Q  93 atgagaaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatc-atgtgggacc 189  Q
    |||||||||  |||||| | | ||||||||  | ||||||||||||||| |  |||||||||||  ||| |||| |  ||||||||||  || |||||||    
T  37810119 atgagaaatggtagcaaaatacattttaactcatacttttcaacacactctctttgattggttataattcacatgggacccaccaaatttatatgggacc 37810218  T
Q  190 catataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    ||| ||| ||||||| |||| |||||| |||||||||||||||| ||| ||| || |||||||    
T  37810219 catctaa-tttggtgggacccatgtgaattttaaccaatcaaagtgagtgtgatggaaagtgt 37810280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 248
Target Start/End: Original strand, 33069145 - 33069297
Alignment:
Q  98 aaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatc-atgtgggacccatat 194  Q
    |||| ||||||||||| ||| || || ||||||||||||||||| |  ||||| |||||| ||| |||||   |||||||| |  || ||||||||| ||    
T  33069145 aaatgttagcaacacacattctatcacacacttttcaacacactttctttgatcggttaaaattcacattagacccaccaagtttatatgggacccacat 33069244  T
Q  195 aaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaa 248  Q
    || ||| ||| |||| | |||| ||||||||||||||| |||| ||||||||||    
T  33069245 aa-tttagtgggacccaagtgatttttaaccaatcaaaaagagtgtgttgaaaa 33069297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 44247590 - 44247664
Alignment:
Q  170 ccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttg 244  Q
    ||||||||| ||||||| |||||| ||||||| ||   || |||||| |||||||||||||||||||| ||||||    
T  44247590 ccaccaaattatgtgggtcccatacaaatttgatggatcccatgtgaattttaaccaatcaaagagagtgtgttg 44247664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 254
Target Start/End: Complemental strand, 4237337 - 4237253
Alignment:
Q  170 ccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtat 254  Q
    ||||||||||||||||| |||||| ||||||||||   || |||| | ||||||||||||||| |||   ||||| |||||||||    
T  4237337 ccaccaaatcatgtgggtcccatacaaatttggtggatcccatgtaaattttaaccaatcaaaaagaaaatgttggaaagtgtat 4237253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 6979160 - 6979116
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacaca 139  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||    
T  6979160 gagaaatatcagcaacacacattttaacacacacttttcaacaca 6979116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 9430162 - 9430277
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
    ||||||| ||||| ||| | || || || ||||||||||||||| |||||| ||||||| || |    |||||| ||||||||||||||| |||   |||    
T  9430162 tttgattagttaaaatttatatagatcctaccaaatcatgtgggtcccatacaaatttgatggggttcatgtgaattttaaccaatcaaatagaatatgt 9430261  T
Q  243 tgaaaagtgtatgtta 258  Q
    |||||||||| |||||    
T  9430262 tgaaaagtgtgtgtta 9430277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 261
Target Start/End: Complemental strand, 41496106 - 41496055
Alignment:
Q  210 tatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    ||||||| ||||||||||||||||| || || ||||||||||| ||||||||    
T  41496106 tatgtgaattttaaccaatcaaagatagtgtattgaaaagtgtgtgttaaaa 41496055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 15194519 - 15194572
Alignment:
Q  104 tagcaacacatattttaacatacacttttca--acacactgtttgattggttaa 155  Q
    |||||||||| ||||||||||||||||||||  |||| || |||||||||||||    
T  15194519 tagcaacacaaattttaacatacacttttcagcacactctttttgattggttaa 15194572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 2302126 - 2302055
Alignment:
Q  188 cccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    ||||||||||||||||  ||| |||||||||||||||||||| ||||  | |||||||||||| | ||||||||    
T  2302126 cccatataaatttggttggac-tatgtgagttttaaccaatc-aagaaggtgtgttgaaaagtatgtgttaaaa 2302055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 25666877 - 25666946
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||| || | |||||  |||||||  ||||||||||| |||||||||| |||||||||||| ||||    
T  25666877 atttggtgggatccatgtggattttaacacatcaaagagagtgtgttgaaaattgtatgttaaaatgtgt 25666946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 201
Target Start/End: Complemental strand, 36283567 - 36283538
Alignment:
Q  172 accaaatcatgtgggacccatataaatttg 201  Q
    ||||||||||||||||||||||||||||||    
T  36283567 accaaatcatgtgggacccatataaatttg 36283538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 258
Target Start/End: Complemental strand, 45300501 - 45300366
Alignment:
Q  125 acacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagtttta 222  Q
    ||||||||||| ||||| |||  |||||||||| ||| |||| ||  ||| ||||| || |||| |||||||| |||| ||| | || || ||  |||||    
T  45300501 acacttttcaatacactctttttgattggttaaaattcacatggattccatcaaattatatgggtcccatatagatttagtgggtcccatatgtatttta 45300402  T
Q  223 accaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
    ||||||||||  ||| |||||||||| ||| |||||    
T  45300401 accaatcaaaaggagtgtgttgaaaaatgtgtgtta 45300366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 143 - 258
Target Start/End: Complemental strand, 3907768 - 3907655
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
    ||||||||||||| ||| |||| |  |||||||||||||||||| ||||||||||||||||| | || |||||| ||||||||||||||  |||| ||||    
T  3907768 tttgattggttaaaattcacatgggtcccaccaaatcatgtgggtcccatataaatttggtgggtcccatgtgaattttaaccaatcaa--agagtgtgt 3907671  T
Q  243 tgaaaagtgtatgtta 258  Q
    |||||||||| |||||    
T  3907670 tgaaaagtgtttgtta 3907655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 232
Target Start/End: Original strand, 3907631 - 3907768
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaa-tcatgtgggacccata 193  Q
    |||||||  |||||||||| ||| ||||| ||||||||||||||||| ||||||||||||| ||| |||| |  ||||||||| | || ||||||||| |    
T  3907631 gagaaatgctagcaacacacattctaacaaacacttttcaacacactctttgattggttaaaattcacatgggacccaccaaatttatatgggacccaca 3907730  T
Q  194 taaatttggtgtgacctatgtgagttttaaccaatcaaa 232  Q
    |  |||||||| |||| |||||| |||||||||||||||    
T  3907731 t-gatttggtgggacccatgtgaattttaaccaatcaaa 3907768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 249
Target Start/End: Original strand, 42420068 - 42420148
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacct-atgtgagttttaaccaatcaaagagagcgtgttgaaaag 249  Q
    |||||||||||||||||  |||||||||||||| || || || |||||||||||||||||||||| |||| |||||||||||    
T  42420068 cccaccaaatcatgtggatcccatataaatttgatg-gatctcatgtgagttttaaccaatcaaatagagtgtgttgaaaag 42420148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 268
Target Start/End: Complemental strand, 25545306 - 25545209
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgtat 268  Q
    ||||||||||||||| || ||||||||||||| ||| | |  |||||| ||||||||||||||  |||| |||||||||| ||| |||||||| ||||||    
T  25545306 cccaccaaatcatgtcggtcccatataaatttagtgggtctcatgtgaattttaaccaatcaa--agagtgtgttgaaaaatgtgtgttaaaatgtgtat 25545209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 261
Target Start/End: Original strand, 41169415 - 41169533
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
    ||||||||||| | ||| |||| ||  ||||||||||||| | | |||||||||||||||||   |  |||||| |||||||  ||||||||||| ||||    
T  41169415 tttgattggttgaaattcacatggattccaccaaatcatgcgagtcccatataaatttggtggatcacatgtgaattttaacggatcaaagagagtgtgt 41169514  T
Q  243 tgaaaagtgtatgttaaaa 261  Q
    |||||| ||| ||||||||    
T  41169515 tgaaaaatgtgtgttaaaa 41169533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 36059360 - 36059228
Alignment:
Q  106 gcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggt 203  Q
    |||||||| ||| ||||| | ||||| ||||||||| |  |||||||||||| ||| |||| || |||| ||||||||||||| | |||||||||||| |    
T  36059360 gcaacacacattctaacacatactttccaacacactttatttgattggttaaaatttacatggatcccatcaaatcatgtgggtctcatataaatttgat 36059261  T
Q  204 gtgacctatgtgagttttaaccaatcaaagaga 236  Q
    | | |  |||||| | |||| ||||||||||||    
T  36059260 gggtctcatgtgaatcttaatcaatcaaagaga 36059228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 261
Target Start/End: Complemental strand, 33029582 - 33029490
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    |||||||||| |  || ||| ||||||||||||||| ||| ||| ||| ||||||| ||| |||||||  |||||||||||| ||||||||||    
T  33029582 cccaccaaattagatgtgactcatataaatttggtgggacttatatgaattttaactaattaaagagaatgtgttgaaaagtatatgttaaaa 33029490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 3771280 - 3771221
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttgg 202  Q
    ||||||||||||| ||| ||||||   ||||||||||||| |||||||||||||||||||    
T  3771280 tttgattggttaaaattcacattggttccaccaaatcatgcgggacccatataaatttgg 3771221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 27195415 - 27195262
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaa--cacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccat 192  Q
    |||||||  ||| |||||| ||||||||| ||||||| |||  ||| || |||||||| |||| ||| ||||    ||||| ||||||||| ||||||||    
T  27195415 gagaaatgctagtaacacacattttaacacacacttt-caatgcactctctttgattgattaaaattcacatgagtcccacaaaatcatgtcggacccat 27195317  T
Q  193 ataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaa 247  Q
    ||||||||||||  | | |||||| |||||| |||| ||| |||| |||||||||    
T  27195316 ataaatttggtggaatccatgtgaattttaatcaattaaaaagagtgtgttgaaa 27195262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 258
Target Start/End: Original strand, 4190084 - 4190201
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagaga--gcgt 240  Q
    ||||||||||||| ||| |||| || |||| ||||| | ||||| || || | ||||||||| | || |||||| |||||||| ||||||||||  | ||    
T  4190084 tttgattggttaaaattcacatggatcccaacaaattacgtgggtcctatgtgaatttggtgggtcccatgtgaattttaacctatcaaagagaccgtgt 4190183  T
Q  241 gttgaaaagtgtatgtta 258  Q
    |||||||||||| |||||    
T  4190184 gttgaaaagtgtgtgtta 4190201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 25545204 - 25545352
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaa-tcatgtgggacccatataaatttgg 202  Q
    |||||| ||| ||||||||| ||| ||||||||||||| ||||||||||||| ||| ||||    ||||| ||| | || ||||||| | ||  ||||||    
T  25545204 tagcaatacacattttaacacacatttttcaacacactctttgattggttaaaattcacatgagacccactaaatttatatgggaccgacat-gatttgg 25545302  T
Q  203 tgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    || |||  | |||| |||||||||||||||||||| ||||| ||| ||||    
T  25545303 tgggactcacgtgaattttaaccaatcaaagagagtgtgttaaaatgtgt 25545352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 248
Target Start/End: Original strand, 33029469 - 33029624
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaa-tcatgtgggaccca 191  Q
    |||||||  |||||||||||||||||||||| |||||||||||||  || ||| ||| ||||| ||| | ||    ||||||||| | || || | | ||    
T  33029469 gagaaatgctagcaacacatattttaacatatacttttcaacacattctctttaattagttaaaattcatataagtcccaccaaatttatatgagtcaca 33029568  T
Q  192 tataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaa 248  Q
    | | ||||||||| |||  ||||||||||||||| ||||||||||| ||||||||||    
T  33029569 tct-aatttggtgggactcatgtgagttttaaccgatcaaagagagtgtgttgaaaa 33029624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 234
Target Start/End: Complemental strand, 4158193 - 4158102
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaaga 234  Q
    ||||||||||||| ||| |||   | |||| ||||| ||||||||| |||||||||||||| ||| | |||||| ||| |||| ||||||||    
T  4158193 tttgattggttaaaattcacacgaatcccatcaaattatgtgggactcatataaatttggtatgatccatgtgaatttcaaccgatcaaaga 4158102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 261
Target Start/End: Original strand, 17474866 - 17474916
Alignment:
Q  211 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    |||||| |||||| ||||||||||| | |||||||||||||| ||||||||    
T  17474866 atgtgaattttaatcaatcaaagagtgtgtgttgaaaagtgtgtgttaaaa 17474916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 35244984 - 35244938
Alignment:
Q  95 gagaaatattagcaacacatattttaacatacacttttcaacacact 141  Q
    |||||||  |||||||||| |||||||||||||||| ||||||||||    
T  35244984 gagaaatgctagcaacacacattttaacatacacttgtcaacacact 35244938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 32309737 - 32309649
Alignment:
Q  119 taacatacacttttcaacaca--ctgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgt 205  Q
    ||||| |||||||||||| ||  || ||||||| ||||| ||| ||||| | |||||||||||||||| | |||||||||  |||||||    
T  32309737 taacacacacttttcaacgcattctctttgatttgttaaaatttacattaatcccaccaaatcatgtgagtcccatataacattggtgt 32309649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 7721397 - 7721453
Alignment:
Q  192 tataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaa 248  Q
    ||||||||||||| | ||||||||| || |||||||| |||||||| ||||| ||||    
T  7721397 tataaatttggtgggtcctatgtgaattataaccaattaaagagagtgtgttaaaaa 7721453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 22399852 - 22399776
Alignment:
Q  175 aaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtg 251  Q
    ||||||| |||| | ||||| ||||||||| | |  |||||| ||||| ||||||||| |||| |||||||||||||    
T  22399852 aaatcatctgggtctcatatgaatttggtgggtctcatgtgaattttatccaatcaaaaagagtgtgttgaaaagtg 22399776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Original strand, 35244924 - 35244968
Alignment:
Q  222 aaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    ||||||||||||| || ||||||| ||||||||||||||| ||||    
T  35244924 aaccaatcaaagaaagtgtgttgacaagtgtatgttaaaatgtgt 35244968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 204
Target Start/End: Original strand, 38029531 - 38029626
Alignment:
Q  108 aacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtg 204  Q
    |||||| ||| ||||| ||| ||| ||||||||| ||||||||||||| ||| |||| |  | |||||||||||||||  | |||||||||| ||||    
T  38029531 aacacacattctaacacacattttccaacacact-tttgattggttaaaattcacatgggtctcaccaaatcatgtggatctcatataaattgggtg 38029626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 2276387 - 2276276
Alignment:
Q  147 attggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaa 246  Q
    ||||||||| ||| ||||  | |||||||||| ||||||| ||| ||||||||||||| || | |||||| |||||||||||||||||||| ||||||||    
T  2276387 attggttaaaattcacatgaatcccaccaaattatgtgggtcccttataaatttggtgggatccatgtgaattttaaccaatcaaagagagtgtgttgaa 2276288  T
Q  247 aagtgtatgtta 258  Q
    |||||| |||||    
T  2276287 aagtgtgtgtta 2276276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 12275893 - 12275743
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||||||| ||| ||||| ||||||| ||||||||| | |  |||||||||| ||| | || |  |||||||||||||||||| ||||||||||||||    
T  12275893 tagcaacacacattctaacacacactttccaacacactctcttcgattggttaaaattcatatgggtcccaccaaatcatgtgggtcccatataaatttg 12275794  T
Q  202 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    ||| | || |||||| |||||||||||  ||||||| |||||| |||||||    
T  12275793 gtgggtcccatgtgatttttaaccaattgaagagagtgtgttggaaagtgt 12275743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 252
Target Start/End: Complemental strand, 49107045 - 49106911
Alignment:
Q  119 taacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtga 216  Q
    ||||| ||||||||||||||||| |  |||||||||||| ||| |||| |  |||||||||||||| |||||| |||||||||||||  |||| ||||||    
T  49107045 taacacacacttttcaacacactctctttgattggttaaaattcacataggtcccaccaaatcatgcgggacc-atataaatttggtaggacccatgtga 49106947  T
Q  217 gttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
     |||||| ||||||||||| | |||||| |||||||    
T  49106946 attttaatcaatcaaagagtgtgtgttggaaagtgt 49106911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 40134539 - 40134393
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgtttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggt 203  Q
    ||||||| || ||||||||| ||||||| ||||||||| | ||||||||||| ||| |||| |  |||||||||| ||||||| ||||||||||||||||    
T  40134539 tagcaacccacattttaacacacactttccaacacactctctgattggttaaaattcacatgggtcccaccaaattatgtgggtcccatataaatttggt 40134440  T
Q  204 gtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
      | ||  ||||| |||  ||||||||||||||| ||||| ||| ||||    
T  40134439 aggtcccctgtgaattt--accaatcaaagagagtgtgttaaaatgtgt 40134393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 49106984 - 49107045
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
    |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |||||    
T  49106984 atttggtgggacctatgtgaattttaaccaatcaaagagagtgtgttgaaaagtgtgtgtta 49107045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 104 - 252
Target Start/End: Complemental strand, 26863068 - 26862918
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||||||| ||||||| | |||||||||| || ||| |  || ||||||||| ||| |||| |  |||||||||||||||||| || |||||||| ||    
T  26863068 tagcaacacacattttaatacacacttttcatcaaactctctttaattggttaaaattcacatgggtcccaccaaatcatgtgggtcctatataaatatg 26862969  T
Q  202 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    |||   || |||||| |||||||||||||| ||||| ||||| ||| ||||    
T  26862968 gtgaatcccatgtgaattttaaccaatcaaggagagtgtgttaaaatgtgt 26862918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 258
Target Start/End: Complemental strand, 5443684 - 5443529
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||||||| ||| ||||| ||| ||||||||| ||| |  |||||||||||| ||| |||| | | ||||||||| ||||||  ||||||||| |||     
T  5443684 tagcaacacacattctaacacacatttttcaacatactttctttgattggttaaaattcacatag-ctccaccaaattatgtggatcccatataactttt 5443586  T
Q  202 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
    ||| | ||||||||| || |||||  ||||| |||  |||||||||||||| |||||    
T  5443585 gtgggtcctatgtgaattctaaccggtcaaacagaatgtgttgaaaagtgtgtgtta 5443529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 10056707 - 10056630
Alignment:
Q  173 ccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagt 250  Q
    |||||||||||||| |||||||||| |||||| |  | |||||| |||| |||||||||| |||| ||||||||||||    
T  10056707 ccaaatcatgtgggtcccatataaaattggtgggttccatgtgaattttgaccaatcaaaaagagtgtgttgaaaagt 10056630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 266
Target Start/End: Complemental strand, 3235673 - 3235550
Alignment:
Q  143 tttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgt 242  Q
    ||||||||||||| ||| |||| |  || ||| ||  ||||||| ||||| |||||||| || | |  |||||| |||||||||||||||||||| || |    
T  3235673 tttgattggttaaaattcacatgggtccgacccaaatatgtgggtcccatgtaaatttgatgggtctcatgtgaattttaaccaatcaaagagagtgtat 3235574  T
Q  243 tgaaaagtgtatgttaaaacgtgt 266  Q
    || ||||||| |||||||| ||||    
T  3235573 tggaaagtgtgtgttaaaatgtgt 3235550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 228
Target Start/End: Original strand, 42986261 - 42986319
Alignment:
Q  170 ccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaat 228  Q
    ||||||||||||||| ||||||| ||||||||||| || |||||||| |||||| ||||    
T  42986261 ccaccaaatcatgtgagacccatttaaatttggtgggatctatgtgaattttaatcaat 42986319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 258
Target Start/End: Complemental strand, 5452729 - 5452574
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||||||| ||| ||||| ||| ||||||||| ||| |  |||||||||||| ||| |||| | | ||||| ||| ||||||  ||||||||| |||     
T  5452729 tagcaacacacattctaacacacatttttcaacatactttctttgattggttaaaattcacatag-ctccacccaattatgtggatcccatataactttt 5452631  T
Q  202 gtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
    ||| | ||||||||| || |||||  ||||| |||  |||||||||||||| |||||    
T  5452630 gtgggtcctatgtgaattctaaccggtcaaacagaatgtgttgaaaagtgtgtgtta 5452574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 261
Target Start/End: Original strand, 31042391 - 31042446
Alignment:
Q  206 gacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    |||| ||| |||||||||||||||||||||||  | || |||||||||||||||||    
T  31042391 gacccatgcgagttttaaccaatcaaagagagtatattaaaaagtgtatgttaaaa 31042446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 40134452 - 40134527
Alignment:
Q  183 tgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaa 261  Q
    ||||||||| |||| ||||||| |||| |||||| ||||||||||||  |||||| |||||| ||||||| ||||||||    
T  40134452 tgggacccacataa-tttggtgggacccatgtgaattttaaccaatc--agagagtgtgttggaaagtgtgtgttaaaa 40134527  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 252
Target Start/End: Original strand, 2276254 - 2276411
Alignment:
Q  93 atgagaaatattagcaacacatattttaacatacacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaa-tcatgtgggacc 189  Q
    ||||||||| |||||||||||     ||||| ||||||||||||||||| |  |||||||||||| ||| |||| || ||||||||| | ||  ||||||    
T  2276254 atgagaaatgttagcaacacac----taacacacacttttcaacacactctctttgattggttaaaattcacatggatcccaccaaatttataagggacc 2276349  T
Q  190 catataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgt 252  Q
    || || ||||||||| ||   |||||| ||||||||||| ||||| || ||||| ||| ||||    
T  2276350 cacat-aatttggtgggattcatgtgaattttaaccaattaaagatagtgtgttaaaatgtgt 2276411  T

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Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 7017164 - 7017225
Alignment:
Q  196 aatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
    ||||||||  ||| ||||||| |||||||||||||||||||| || ||||||| ||| ||||    
T  7017164 aatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgtt 7017225  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 257
Target Start/End: Original strand, 7032522 - 7032583
Alignment:
Q  196 aatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtt 257  Q
    ||||||||  ||| ||||||| |||||||||||||||||||| || ||||||| ||| ||||    
T  7032522 aatttggtaggacttatgtgaattttaaccaatcaaagagagtgtattgaaaaatgtgtgtt 7032583  T

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Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 12275817 - 12275878
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgtta 258  Q
    |||||||| |||| || ||| |||||||||||| ||||||| |||||| ||||||| |||||    
T  12275817 atttggtgggacccatatgaattttaaccaatcgaagagagtgtgttggaaagtgtgtgtta 12275878  T

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Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 26862992 - 26863061
Alignment:
Q  197 atttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||| |||| |||||| ||||||||||| ||||||||  || |||||||||| | |||||| ||||    
T  26862992 atttggtgggacccatgtgaattttaaccaattaaagagagtttgatgaaaagtgtgtattaaaatgtgt 26863061  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 18089836 - 18089749
Alignment:
Q  125 acacttttcaacacactgt--ttgattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttggtgtgacct 210  Q
    |||||||| |||||||| |  ||| |||||||| ||| |||| |  || ||||||| |||||| |||||||||||||||||| |||||    
T  18089836 acactttttaacacactctctttggttggttaaaattcacatgggtccaaccaaattatgtggaacccatataaatttggtgggacct 18089749  T

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Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 22026089 - 22026137
Alignment:
Q  218 ttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgt 266  Q
    |||||||| |||||| ||||| ||||||||| ||| |||||||||||||    
T  22026089 ttttaacctatcaaatagagcatgttgaaaaatgtgtgttaaaacgtgt 22026137  T

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Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 132
Target Start/End: Complemental strand, 31042458 - 31042430
Alignment:
Q  104 tagcaacacatattttaacatacactttt 132  Q
    |||||||||||||||||||||||||||||    
T  31042458 tagcaacacatattttaacatacactttt 31042430  T

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Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 104 - 234
Target Start/End: Complemental strand, 136476 - 136344
Alignment:
Q  104 tagcaacacatattttaacatacacttttcaacacactgttt--gattggttaagattaacattgaccccaccaaatcatgtgggacccatataaatttg 201  Q
    |||||| ||| ||||||||| ||| ||||||||||||| |||  |||||||||| | | ||||    |||| ||||||||||| ||||||||||||||||    
T  136476 tagcaatacacattttaacacacatttttcaacacactctttttgattggttaaaactcacatgtgtcccatcaaatcatgtgtgacccatataaatttg 136377  T
Q  202 gtgtgacctatgtgagttttaaccaatcaaaga 234  Q
     || |||  || ||| |||||||||||||||||    
T  136376 atgggactcatatgaattttaaccaatcaaaga 136344  T

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Target: scaffold0003; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 136414 - 136471
Alignment:
Q  211 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgtat 268  Q
    |||||||||||||||||||||| |||| |||||||||| ||| |||||||| ||||||    
T  136414 atgtgagttttaaccaatcaaaaagagtgtgttgaaaaatgtgtgttaaaatgtgtat 136471  T

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Target: scaffold0137 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 260
Target Start/End: Original strand, 8232 - 8322
Alignment:
Q  169 cccaccaaatcatgtgggacccatataaatttggtgtgacctatgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaa 260  Q
    |||||||||||||||||| |||| |||| ||||||| ||   |||||| ||||| ||||||||| |||  | |||||||||||| |||||||    
T  8232 cccaccaaatcatgtgggtcccacataa-tttggtgggattcatgtgaattttagccaatcaaaaagaatgcgttgaaaagtgtgtgttaaa 8322  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Original strand, 201050 - 201107
Alignment:
Q  211 atgtgagttttaaccaatcaaagagagcgtgttgaaaagtgtatgttaaaacgtgtat 268  Q
    |||||| | ||||| |||||||||||| ||||||| |||||| |||||||| ||||||    
T  201050 atgtgaatcttaacaaatcaaagagagtgtgttgataagtgtgtgttaaaatgtgtat 201107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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