View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5533_high_1 (Length: 543)
Name: NF5533_high_1
Description: NF5533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5533_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 5e-91; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 190 - 523
Target Start/End: Original strand, 4482925 - 4483258
Alignment:
| Q |
190 |
ataaagaaggccaaccaactcacagaaattggcat--ggtggaaaatcgcacatgaaagaaaggtctcaacccaacactagtaacaaagaagagtgaatc |
287 |
Q |
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| T |
4482925 |
ataaagaaggccaaccaacttaccaaaattggcatatggtggaaaatcgaacatgaaagaaaggtctcaacccaacactagtaacaaagaagagtgaatc |
4483024 |
T |
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| Q |
288 |
aataataattgtcttttnnnnnnntcaattgtagttatgaatcaaggggtgaatggatggagaagatgttttaatcttgtagatggtggttgctaattg- |
386 |
Q |
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| T |
4483025 |
aataataattgttttttgaaaaaatcaattgtagttatgaatcaaggggtgaatggatggagaagatggtttaatgttgtagatggtggttgctaattgt |
4483124 |
T |
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| Q |
387 |
nnnnnnnnnngttgacaaagtggttgctaatagnnnnnnnaagatttcgaaaaaactttgctgnnnnnnnttaagatatcgaaaaaactgtttttggaaa |
486 |
Q |
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| T |
4483125 |
ttttttttttgttgacaaagtggttgctaatagttgttttaagatttcgaaaaaactttgctgaaaaaa---aagatatcgaaaaaactgttttttggaa |
4483221 |
T |
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| Q |
487 |
ataattttcggtctcagaagatattattagattgatg |
523 |
Q |
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| T |
4483222 |
aaaattttcggtctccgaagatattattagattgatg |
4483258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 87
Target Start/End: Original strand, 4482743 - 4482821
Alignment:
| Q |
8 |
cgaagaatatctcacctttcaattaatatttcaaatcaaatagtaaaacattgtataaattggacagatttcatgaacgc |
87 |
Q |
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| T |
4482743 |
cgaacaatatctcacctttcaattaatatttcaaatcaaatagtaaaa-attgtataaattggacagatttcatgaacgc |
4482821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 4493825 - 4493900
Alignment:
| Q |
13 |
aatatctcacctttcaattaatatttcaaatcaaat-agtaaaacattgtataaattggacagatttcatgaacgc |
87 |
Q |
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| T |
4493825 |
aatatctcacctcacaattaatatttcaaatcaaataagtaaaacgttgtataaattggacagaatttatgaacgc |
4493900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 14 - 85
Target Start/End: Original strand, 3173643 - 3173714
Alignment:
| Q |
14 |
atatctcacctttcaattaatatttcaaatcaaatagtaaaacattgtataaattggacagatttcatgaac |
85 |
Q |
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| T |
3173643 |
atatctcacctcataattattatttcaaatgaaatagtaaaatattgtataaattggacagattttatgaac |
3173714 |
T |
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