View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5533_high_3 (Length: 240)
Name: NF5533_high_3
Description: NF5533
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5533_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 39782532 - 39782326
Alignment:
| Q |
21 |
aatacatccttttaatacagggagttgttactactaccagtactacaatttgaatcgttgaccggaatacccacccatgtgcacttgtagtacatccctg |
120 |
Q |
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| T |
39782532 |
aatacatccttttaatacagggagttgttactactaccagtactacaatttgaatcgttgaccggaatacccacccatgtgcacttgtagtacatccctg |
39782433 |
T |
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| Q |
121 |
tgggctgtggctaataaaaaataatagaacatatctattgcatgtgccaaacatatattcaataccagggtctaaccttgccactgcctcagggtcccat |
220 |
Q |
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| T |
39782432 |
tgggctgtggctaataaaaaataatagaacatatctattgcatgtgccaaacatatattcaataccagggtctaaccttgccactgcctcagggtcccat |
39782333 |
T |
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| Q |
221 |
gatgatg |
227 |
Q |
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||||||| |
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| T |
39782332 |
gatgatg |
39782326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 125 - 227
Target Start/End: Complemental strand, 39788883 - 39788783
Alignment:
| Q |
125 |
ctgtggctaataaaaaataatagaacatatctattgcatgtgccaaacatatattcaataccagggtctaaccttgccactgcctcagggtcccatgatg |
224 |
Q |
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| T |
39788883 |
ctgtggctaataaaaaataatagaacatatctattgcatgtgccaaacaaatg--cagttccagggtctaaccttgccaaagcttcagggtcccatgatg |
39788786 |
T |
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| Q |
225 |
atg |
227 |
Q |
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||| |
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| T |
39788785 |
atg |
39788783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 227
Target Start/End: Complemental strand, 39776065 - 39776029
Alignment:
| Q |
191 |
tctaaccttgccactgcctcagggtcccatgatgatg |
227 |
Q |
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| T |
39776065 |
tctaaccttgccaaggcctcagggtcccatgatgatg |
39776029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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