View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5535-Insertion-1 (Length: 155)
Name: NF5535-Insertion-1
Description: NF5535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5535-Insertion-1 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 1e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 6785413 - 6785561
Alignment:
| Q |
7 |
agagattgccaacaacctaaccataactcccacaaacacaggccagtcttcctttatgcttaccacgaacaaccaccttgttgatttttcaatccatgct |
106 |
Q |
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| T |
6785413 |
agagattgccaacaacctaaccataactcccacaaacacaggccagtcttcctttatgcttaccacgaacaaccaccttattgatttttcaatccatgct |
6785512 |
T |
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| Q |
107 |
cgaactgtctttgccattctcgtagctgtttcttctttcaattccagcc |
155 |
Q |
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| T |
6785513 |
cgaactgtctttgccattctcgtagctgtttcttctttcaattccagcc |
6785561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 6e-60
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 6727596 - 6727724
Alignment:
| Q |
27 |
ccataactcccacaaacacaggccagtcttcctttatgcttaccacgaacaaccaccttgttgatttttcaatccatgctcgaactgtctttgccattct |
126 |
Q |
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||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6727596 |
ccataactcccacaaacacaggccaatctttctttatgcttaccacgaacaaccaccttattgatttttcaatccatgctcgaactgtctttgccattct |
6727695 |
T |
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| Q |
127 |
cgtagctgtttcttctttcaattccagcc |
155 |
Q |
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| T |
6727696 |
cgtagctgtttcttctttcaattccagcc |
6727724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 7 - 155
Target Start/End: Original strand, 6730535 - 6730683
Alignment:
| Q |
7 |
agagattgccaacaacctaaccataactcccacaaacacaggccagtcttcctttatgcttaccacgaacaaccaccttgttgatttttcaatccatgct |
106 |
Q |
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| T |
6730535 |
agagattacgaacaacgtagccataactcccacaaacacaggccaatctttctttatgcttaccacgaacaaccaccttattaatttttcaatccatgct |
6730634 |
T |
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| Q |
107 |
cgaactgtctttgccattctcgtagctgtttcttctttcaattccagcc |
155 |
Q |
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| T |
6730635 |
cgaactgtctttgccattctcacagttgtttcttctttcaattcaagcc |
6730683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 6760198 - 6760345
Alignment:
| Q |
8 |
gagattgccaacaacctaaccataactcccacaaacacaggccagtcttcctttatgcttaccacgaacaaccaccttgttgatttttcaatccatgctc |
107 |
Q |
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|||||| | |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||| |
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| T |
6760198 |
gagattacgaacaacgtagccataactcccacaaacacaggccagtcttcctttatgcttaccacgaacaaccaccttattgatttctcagtccatgctc |
6760297 |
T |
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| Q |
108 |
gaactgtctttgccattctcgtagctgtttcttctttcaattccagcc |
155 |
Q |
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|||||||||||||||||||| || |||||||| ||||||||| |||| |
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| T |
6760298 |
gaactgtctttgccattctcacagttgtttcttttttcaattcaagcc |
6760345 |
T |
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