View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5535_high_1 (Length: 289)
Name: NF5535_high_1
Description: NF5535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5535_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 43960896 - 43960614
Alignment:
| Q |
1 |
tgtaccatagtagtttgattaaaaatattggtgagaatagtacccaaaaaacgttcataagaaataatcaaatgataaatacaagattaagagtaatccc |
100 |
Q |
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| T |
43960896 |
tgtaccatagtagtttgattaaaaatgttggtgagaatagtacccaaaaaacgttcataagaaataatcaaatgataaatacaagattaagagtaatccc |
43960797 |
T |
|
| Q |
101 |
actattttattattcattatcatttatatgattatnnnnnnnttgtgtaaaaagacatttataaaatttattaatctgcgaaatctaaatgatacgatgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43960796 |
actattttattattcattatcatttatatgattataaaaaaattgtgtaaaaagacatttataaaatttattaatctgcgaaatctaaatgataggatgc |
43960697 |
T |
|
| Q |
201 |
atatgagtttatgaccgttaggcagaggccgtaataattgattgnnnnnnngtgttaacccttaacacccctagtataatcta |
283 |
Q |
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| T |
43960696 |
atatgagtttatgaccgttaggcagaggccgtaataattgattgtttttttgtgttaacccttaacgcccctagtatagtcta |
43960614 |
T |
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