View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5535_low_2 (Length: 239)
Name: NF5535_low_2
Description: NF5535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5535_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2810845 - 2811070
Alignment:
| Q |
1 |
ttttgaggattgaaatctatttttatattgactctttttattctcttcattttttgctaattattattgtnnnnnnnnggttacttcattgcataaaaac |
100 |
Q |
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| T |
2810845 |
ttttgaggattgaaatctatttttatattgactctttttattctcttcattttttgctagttattattgtaaaaaaaaggttacttcattgcataaaaac |
2810944 |
T |
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| Q |
101 |
caaagaatgaagattataagcagaaaatcacaaacatggagatagtttcattaatatgagaaaaagtgggtttaatttcattaatgaaaaatataaataa |
200 |
Q |
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| T |
2810945 |
caaagaatgaagattataagcagaaaatcacaaacatggagataatttcattaatatgagaaaaagtggg-----tttcattaatgaaaaatataaataa |
2811039 |
T |
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| Q |
201 |
acgaagtaatttcagaaagtaaatgatgatg |
231 |
Q |
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| T |
2811040 |
acgaagtaatttcagaaagtaaatgatgatg |
2811070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 108 - 231
Target Start/End: Original strand, 2808361 - 2808485
Alignment:
| Q |
108 |
tgaagattataagcagaaaatcacaaacatggagatagtttcattaatatgagaaaaagtgggtttaatttcattaatg-aaaaatataaataaacgaag |
206 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||| ||| || ||||| |||| ||| |||||| ||||||| ||||||| |||| |
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| T |
2808361 |
tgaagattataagtagaaaatcacgaacatggagatagtttcattaatctgaaaagaagtgagtttcattaacttaatgaaaaaatagaaataaatgaag |
2808460 |
T |
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| Q |
207 |
taatttcagaaagtaaatgatgatg |
231 |
Q |
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| T |
2808461 |
caattttagaaagtaaacgatgatg |
2808485 |
T |
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