View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5535_low_3 (Length: 233)
Name: NF5535_low_3
Description: NF5535
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5535_low_3 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 36 - 233
Target Start/End: Original strand, 2810453 - 2810656
Alignment:
| Q |
36 |
tctaacatataaataatattattgatatgatttgttaaaggaagaaactaattgnnnnnnntggaaccttacgttgtcnnnnnnncaacacatttcttgt |
135 |
Q |
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| T |
2810453 |
tctaacatataaataatattattgatatgatttgttagaggaagaaactaattgaaaaaaatggaaccttacgttgtcaaaaaaacaacacatttcttgt |
2810552 |
T |
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| Q |
136 |
caaaataaaaattctgaatttagattacaagcataaataaattc------gattaatgttgaatataaaatgtaatggtattgttatgcaaagaaaatag |
229 |
Q |
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| T |
2810553 |
caaaataacaattctgaatttagattacaagcataaataaattcgaagaggattaatgttgaatataaaatgtaatggtattgttatgcaaagaaaatag |
2810652 |
T |
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| Q |
230 |
tatt |
233 |
Q |
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|||| |
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| T |
2810653 |
tatt |
2810656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 121 - 229
Target Start/End: Original strand, 2808205 - 2808320
Alignment:
| Q |
121 |
caacacatttcttgtcaaaataaaaattctgaatttagattacaagcataaataaattc------gattaatgttgaatat-aaaatgtaatggtattgt |
213 |
Q |
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| T |
2808205 |
caacatatttcttgttaaaataacaaatctgaatttagatttcaagcataaacaaattcgaagatgattagtgttcaatataaaaatttaatggtattgt |
2808304 |
T |
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| Q |
214 |
tatgcaaagaaaatag |
229 |
Q |
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| T |
2808305 |
tatgttaagaaaatag |
2808320 |
T |
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