View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5536-Insertion-2 (Length: 737)
Name: NF5536-Insertion-2
Description: NF5536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5536-Insertion-2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 8 - 578
Target Start/End: Complemental strand, 44651706 - 44651137
Alignment:
| Q |
8 |
gtttaaacctttcactctcctaaaaccataccttagttgagtaccatccagaggaggtagcactgtcatcttccgctgtaaccaactagctccggccgtc |
107 |
Q |
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| T |
44651706 |
gtttaaacctttcactctcctaaaaccataccttagttgagtaccatcccgtggag-tagcaatgccatcttccgccgtaaccaactagctccggccgtc |
44651608 |
T |
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| Q |
108 |
gtcatcagcctactatggatcatgatgttattaatattatgcagttttgttgataaatcatatcagtttgattgttgttttgccgtaggtatatacaaaa |
207 |
Q |
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| T |
44651607 |
gtcatcagcctactatggatcatgatgttattaatattatgcagttttgttgataaatcatatcagtttgattgttgttttgcggtaggtatatacaaaa |
44651508 |
T |
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| Q |
208 |
attgagaaaaaatggttttacccaaaggagatcattatttgtagaatatataatgcactaaattgtttataaacacttcatattcttgggaatgataaag |
307 |
Q |
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| T |
44651507 |
attgagaaaaaatgcttttacccaaaggagatcattatttgtagaatatataatgcactaaattgtttataaacacttcatattctcgggaatgataaag |
44651408 |
T |
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| Q |
308 |
tggaacatatacatgcactatttaaaattactgaaaggcttggttagtgaaatttgcatgagaataataatcgatttctaagatagtgtacagaacaaaa |
407 |
Q |
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| T |
44651407 |
tggaacatatacatgcactatttaaaattactgaaaggcttggttagtgaaatttgcatgagaataattatcgatttctaatatagtgtacagaacaaaa |
44651308 |
T |
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| Q |
408 |
gtctttcaaaattgggacctaacggctgcttccttcatgcaattgattaacattcccaatcagtcttcagccatagaaaaggacaaccaccaaccaatta |
507 |
Q |
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| T |
44651307 |
gtctttcaaaattgggacctaacggctgcttccttcatgcaattgattaacattcccaatcagtcttcagccatagaaaaggacaaccaccaaccaatta |
44651208 |
T |
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| Q |
508 |
ttatctcattttccatttattttattgtctctgttaattattcctcactaagattgaaagttctatgcagt |
578 |
Q |
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| T |
44651207 |
ttatctcattttccatttattttatggtctctgttaattattcctcactaagattgaaagttctatgcagt |
44651137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 645 - 737
Target Start/End: Complemental strand, 44651068 - 44650976
Alignment:
| Q |
645 |
cttttgctgacaaaaggattagtaatgacactattacggatctggactcaacgctgttacagcaagatgctgtaacagatcttagccgtacaa |
737 |
Q |
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| T |
44651068 |
cttttgctgacaaaaggattagtaatgacactattactgatctggattcaacgctgttacagcaagatgctgtaacagatcttagccgtacaa |
44650976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 692 - 737
Target Start/End: Complemental strand, 14523699 - 14523654
Alignment:
| Q |
692 |
tcaacgctgttacagcaagatgctgtaacagatcttagccgtacaa |
737 |
Q |
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| T |
14523699 |
tcaacgctcttacagcaggatgctttaacagatcttagccgtacaa |
14523654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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