View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5536-Insertion-3 (Length: 740)
Name: NF5536-Insertion-3
Description: NF5536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5536-Insertion-3 |
 | |
|
| [»] chr4 (6 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr7 (3 HSPs) |
| |
|
| [»] chr1 (9 HSPs) |
| |
|
| [»] scaffold1243 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 265 - 740
Target Start/End: Original strand, 36892416 - 36892891
Alignment:
| Q |
265 |
ttgaatacatattccatgcgaaagatttgttttgtaattaagcgctttgatttggtcatgttgtgtgctctgatatgtgatggctgattcaaagtgcatc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36892416 |
ttgaatacatattccatgcgaaagatttgttttgtaattaagcgctttgatttggtcatgctgtgtgctatgatatgtgatggctgattcaaagtgcatc |
36892515 |
T |
|
| Q |
365 |
gacaaagattttcatgactatttctacgcctttcattgtattgttgtggtttgggcaagagtttttgctgctgcagtttctatgtctgctttgtgtgcat |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
36892516 |
gacaaagattttcatgactatttctacgcctttcattgcattgttgtggtttgggcaagagtttttgctgctgcagtttctatgtctgctttgtttgcat |
36892615 |
T |
|
| Q |
465 |
atagtgcatctaccattgtttgtactacgaatggtgttggaacccgaacgattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtgg |
564 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36892616 |
atagtgcatctaccattgtttgtactacaaatggtgttggaacccgaacgattgtctgttgagaaaatagtgatagttttggtggactttgtcgaagtgg |
36892715 |
T |
|
| Q |
565 |
tttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggtgcctcaaggttggctgcgtgaggttgctggtttttaggtagcaggtttatg |
664 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
36892716 |
tttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggtgcctcaaggttggctgcgtgaggttgctggtttttagttagcaggtttatg |
36892815 |
T |
|
| Q |
665 |
gttactgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgcacctttgttttatgcctagcctttgtcc |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
36892816 |
gttactgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgcacttttgttttatgcctagcctttgtcc |
36892891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 284 - 464
Target Start/End: Complemental strand, 32226649 - 32226468
Alignment:
| Q |
284 |
gaaagatttgttttg-taattaagcgctttgatttggtcatgttgtgtgctctgatatgtgatggctgattcaaagtgcatcgacaaagattttcatgac |
382 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | ||| || ||||||| | |||||||||||| |||||||||| |
|
|
| T |
32226649 |
gaaagatttgttttgctaattaagcgctttgatttggtcatgttgtgtgctttgatttctgaaggttgattcacattgcatcgacaaattttttcatgac |
32226550 |
T |
|
| Q |
383 |
tatttctacgcctttcattgtattgttgtggtttgggcaagagtttttgctgctgcagtttctatgtctgctttgtgtgcat |
464 |
Q |
| |
|
| ||||||| |||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||| |
|
|
| T |
32226549 |
tgtttctacacctttcattgcattgttgtggtttgggcaagagtttttgccggcgcagtttcgatgtctgctttgtgtgcat |
32226468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 284 - 412
Target Start/End: Complemental strand, 1660764 - 1660634
Alignment:
| Q |
284 |
gaaagatttgttttg-taattaagcgctttgatttggtcatgttgtgtgctctgatatgtgatggctgattcaaagtgcatcgac-aaagattttcatga |
381 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||| | |||||| || ||| | ||||||| |
|
|
| T |
1660764 |
gaaagatttgttttggtaattaagcgctttgatttggtcatgttgtgtgatctgatatgtgaaggccgattcacattgcatctacaaaaaaaattcatga |
1660665 |
T |
|
| Q |
382 |
ctatttctacgcctttcattgtattgttgtg |
412 |
Q |
| |
|
| |||||| ||||||||||| ||||||||| |
|
|
| T |
1660664 |
ttgtttctatgcctttcattgcattgttgtg |
1660634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 334 - 407
Target Start/End: Complemental strand, 55821558 - 55821485
Alignment:
| Q |
334 |
ctgatatgtgatggctgattcaaagtgcatcgacaaagattttcatgactatttctacgcctttcattgtattg |
407 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||| |
|
|
| T |
55821558 |
ctgatctgtgaaggctgattcacagtgcatcgacaatttttttcatgactgtttctacgcctttcattgcattg |
55821485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 376 - 464
Target Start/End: Complemental strand, 1660262 - 1660183
Alignment:
| Q |
376 |
tcatgactatttctacgcctttcattgtattgttgtggtttgggcaagagtttttgctgctgcagtttctatgtctgctttgtgtgcat |
464 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| |||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
1660262 |
tcatgactgtttctacgcctttcattgcattgttgt---------aagagtttttgccaccgcagtttctatgtctgctttgtgtgcat |
1660183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 324
Target Start/End: Complemental strand, 1660299 - 1660258
Alignment:
| Q |
284 |
gaaagatttgttttg-taattaagcgctttgatttggtcatg |
324 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1660299 |
gaaagatttgttttgctaattaagcgctttgatttggtcatg |
1660258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 265 - 740
Target Start/End: Original strand, 26449873 - 26450348
Alignment:
| Q |
265 |
ttgaatacatattccatgcgaaagatttgttttgtaattaagcgctttgatttggtcatgttgtgtgctctgatatgtgatggctgattcaaagtgcatc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26449873 |
ttgaatacatattccatgcgaaagatttgttttgtaattaagtgctttgatttggtcatgttgtgtgctctgatatgtgatggctgattcaaagtgcatc |
26449972 |
T |
|
| Q |
365 |
gacaaagattttcatgactatttctacgcctttcattgtattgttgtggtttgggcaagagtttttgctgctgcagtttctatgtctgctttgtgtgcat |
464 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26449973 |
gacaaaaaatttcatgactatttctacgcctttcattgcattgttgtggtttgggcaagagtttttgctgctgcagtttctatgtctgctttgtgtgcat |
26450072 |
T |
|
| Q |
465 |
atagtgcatctaccattgtttgtactacgaatggtgttggaacccgaacgattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtgg |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26450073 |
atagtgcatctaccattgtttgtactacgaatggtgttggaacccgaacgattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtgg |
26450172 |
T |
|
| Q |
565 |
tttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggtgcctcaaggttggctgcgtgaggttgctggtttttaggtagcaggtttatg |
664 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
26450173 |
tttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggtgcctcaaggttggctgcgtgaggctgctggtttttaggtatcaggtttatg |
26450272 |
T |
|
| Q |
665 |
gttactgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgcacctttgttttatgcctagcctttgtcc |
740 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26450273 |
gttactgtcattaggaaccgtagtgttgtttgtacttttgggtgctgcacttttgttttatgcctagcctttgtcc |
26450348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 26449604 - 26449723
Alignment:
| Q |
8 |
aaagcggcggaggtcggagcaggttgtgatggacggtctcgcaatttaaaggttgtgtacc-atttgattaattcattctccaagtttcaatttatcatt |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26449604 |
aaagcggcggaggtcggagctagttgtgatgaacggtctcgcaatttaaaagttgtgtacccatttgattaattcattctccaagtttcaatttatcatt |
26449703 |
T |
|
| Q |
107 |
cttatttaatcttaaactaa |
126 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
26449704 |
cttatttaatcttaaactaa |
26449723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 163 - 213
Target Start/End: Original strand, 26449752 - 26449802
Alignment:
| Q |
163 |
aggttatccaccttcctctaatcccccaatcatgtaagtcatttaagaatg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26449752 |
aggttatccaccttcctctaatcccccaatcatgtaagtcatttaagaatg |
26449802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 359 - 740
Target Start/End: Original strand, 1972440 - 1972821
Alignment:
| Q |
359 |
tgcatcgacaaagattttcatgactatttctacgcctttcattgtattgttgtggtttgggcaagagtttttgctgctgcagtttctatgtctgctttgt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1972440 |
tgcatcgacaaagattttcatgactatttctacgcctttcattgcattgttgtggtttgggcaagagttttcgctgctgcagtttctatgtctgctttgt |
1972539 |
T |
|
| Q |
459 |
gtgcatatagtgcatctaccattgtttgtactacgaatggtgttggaacccgaacgattgtctgttgagaaaatagtggtagttttggtggactttgtcg |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1972540 |
gtgcatatagtgcatctaccattgtttgtactacgaatggtgttggaacccgaacgattgtctgttgagaaaatagtggtagttttggtggactttttcg |
1972639 |
T |
|
| Q |
559 |
aagtggtttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggtgcctcaaggttggctgcgtgaggttgctggtttttaggtagcagg |
658 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1972640 |
aagtggtttctgtcctttgcggtgtgccctcgaggggcagcaggtttgttttggtgcctcaaggttggctgcgtgaggttgctggtttttaggtagcagg |
1972739 |
T |
|
| Q |
659 |
tttatggttactgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgcacctttgttttatgcctagcctttgtcc |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
1972740 |
tttatggttactgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgcacttttgttttatgtctagcctttgtcc |
1972821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 265 - 480
Target Start/End: Original strand, 7851436 - 7851651
Alignment:
| Q |
265 |
ttgaatacatattccatgcgaaagatttgttttg-taattaagcgctttgatttggtcatgttgtgtgctctgatatgtgatggctgattcaaagtgcat |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| | || ||||||||||||||||||||||||||||||| |
|
|
| T |
7851436 |
ttgaatacatattccatgcgaaagatttgttttggtaattaagcgcattgatttggtcatgttatatgttctgatatgtgatggctgattcaaagtgcat |
7851535 |
T |
|
| Q |
364 |
cgacaaagattttcatgactatttctacgcctttcattgtattgttgtggtttgggcaagagtttttgctgctgcagtttctatgtctgctttgtgtgca |
463 |
Q |
| |
|
|||| || ||||||||||||||||||||| |||||||| ||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7851536 |
cgacgaat-ttttcatgactatttctacgcttttcattgctttgctgtggtttgggccaaagtttttgctgctgcagtttctatgtctgctttgtgtgca |
7851634 |
T |
|
| Q |
464 |
tatagtgcatctaccat |
480 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
7851635 |
tatagtgcatataccat |
7851651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 514 - 736
Target Start/End: Original strand, 13948072 - 13948294
Alignment:
| Q |
514 |
gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggt |
613 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| |||||||||||| ||||||| ||| ||||| |||||| |||||||| ||||||| | | |||| |
|
|
| T |
13948072 |
gattgtcctttgagaaaatagtgatagttttgggggactttgtcgaggtggtttatgttttttgtggtgtgttctcgagggacagcaggct--gtgtggt |
13948169 |
T |
|
| Q |
614 |
gcctcaaggttggctgcgtgaggttgctggt-ttttaggtagcaggtttatggttactgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgc |
712 |
Q |
| |
|
||||| ||||||||||||||| ||||| | ||| ||||||| |||| |||||| ||||| | |||||||| ||| ||| ||| |||| || ||||| |
|
|
| T |
13948170 |
gcctctgtgttggctgcgtgagggtgctgctatttcaggtagcgtgtttttggtta-tgtcactcggaaccgttgtgatgtaggtg-ttttaggggctgc |
13948267 |
T |
|
| Q |
713 |
acc---tttgttttatgcctagccttt |
736 |
Q |
| |
|
||| |||||||| |||||||||||| |
|
|
| T |
13948268 |
accttttttgttttgtgcctagccttt |
13948294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 171; Significance: 2e-91; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 264 - 481
Target Start/End: Complemental strand, 5564659 - 5564442
Alignment:
| Q |
264 |
gttgaatacatattccatgcgaaagatttgttttg-taattaagcgctttgatttggtcatgttgtgtgctctgatatgtgatggctgattcaaagtgca |
362 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5564659 |
gttgaatacatattctatgcgaaagatttgttttggtaattaagcgcattgatttggtcatgttgtgtgttctgatatgtgatggctgattcaaagtgca |
5564560 |
T |
|
| Q |
363 |
tcgacaaagattttcatgactatttctacgcctttcattgtattgttgtggtttgggcaagagtttttgctgctgcagtttctatgtctgctttgtgtgc |
462 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5564559 |
tcgacgaat-ttttcatgactatttctacgcctttcattgcattgttgtggtttgggcaaaagtttttgctgctgcagtttctatgtctgctttgtgtgc |
5564461 |
T |
|
| Q |
463 |
atatagtgcatctaccatt |
481 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
5564460 |
atatagtgcatataccatt |
5564442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 514 - 736
Target Start/End: Complemental strand, 55040452 - 55040230
Alignment:
| Q |
514 |
gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggt |
613 |
Q |
| |
|
|||||||| |||||||||||||| || ||||||| |||||||||| ||||||||||| ||||| |||||| || ||||||||||||| | | | || |
|
|
| T |
55040452 |
gattgtcttttgagaaaatagtgatatttttggtatactttgtcgaggtggtttctgttttttgtggtgtgttcttgaggggcagcaggct--gtgtagt |
55040355 |
T |
|
| Q |
614 |
gcctcaaggttggctgcgtgaggttgctggt-ttttaggtagcaggtttatggttactgtcattaggaaccgtagtgttgtttgtgcttttggg--tgct |
710 |
Q |
| |
|
|| || ||||||||||||||| ||||| | |||||| |||||||||| ||||| |||||| |||||||||| ||| |||| ||| ||| ||| ||| |
|
|
| T |
55040354 |
gcatctttgttggctgcgtgaggctgctgctattttagatagcaggtttttggtt-ctgtcactaggaaccgttgtgatgttggtgttttaggggctgca |
55040256 |
T |
|
| Q |
711 |
gcacctttgttttatgcctagccttt |
736 |
Q |
| |
|
|| | |||||||| |||||||||||| |
|
|
| T |
55040255 |
gctcttttgttttgtgcctagccttt |
55040230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 523 - 602
Target Start/End: Complemental strand, 55040082 - 55040003
Alignment:
| Q |
523 |
ttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcagg |
602 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||| ||||||| |||||||| ||||||| |
|
|
| T |
55040082 |
ttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtggtgtgctctcgagggacagcagg |
55040003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 334 - 402
Target Start/End: Complemental strand, 19001509 - 19001442
Alignment:
| Q |
334 |
ctgatatgtgatggctgattcaaagtgcatcgacaaagattttcatgactatttctacgcctttcattg |
402 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
19001509 |
ctgatctgtgaaggctgattcacagtgcatcgacaaat-ttttcatgactgtttctacgcctttcattg |
19001442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 480 - 535
Target Start/End: Complemental strand, 53111966 - 53111911
Alignment:
| Q |
480 |
ttgtttgtactacgaatggtgttggaacccgaacgattgtctgttgagaaaatagt |
535 |
Q |
| |
|
|||| |||||||||||||| ||||||| ||||| ||||| |||||||||||||||| |
|
|
| T |
53111966 |
ttgtctgtactacgaatggagttggaatccgaatgattgcctgttgagaaaatagt |
53111911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 2e-82; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 569 - 740
Target Start/End: Complemental strand, 40981189 - 40981018
Alignment:
| Q |
569 |
tgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggtgcctcaaggttggctgcgtgaggttgctggtttttaggtagcaggtttatggtta |
668 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
40981189 |
tgtcttttgcggtgtgccctcgaggggcagcatgtttgttttggtgcctcaaggttggctgcgtgagggtgctggtttttaggtagcaggtttatgatta |
40981090 |
T |
|
| Q |
669 |
ctgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgcacctttgttttatgcctagcctttgtcc |
740 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40981089 |
ctgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgcacttttgttttatgcctagcctttgtcc |
40981018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 514 - 736
Target Start/End: Original strand, 35163076 - 35163298
Alignment:
| Q |
514 |
gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggt |
613 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||| ||||||||||| ||||| |||||| || ||||||||||||| | | | || |
|
|
| T |
35163076 |
gattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtgtgttcttgaggggcagcaggct--gtgtagt |
35163173 |
T |
|
| Q |
614 |
gcctcaaggttggctgcgtgaggttgctggt-ttttaggtagcaggtttatggttactgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgc |
712 |
Q |
| |
|
|| || ||||||||||||||| ||||| | |||||| |||||||||| ||||| |||||| |||||||||| ||| |||| ||| |||| || ||||| |
|
|
| T |
35163174 |
gcatctttgttggctgcgtgaggctgctgctattttagatagcaggtttttggtt-ctgtcactaggaaccgttgtgatgttggtg-ttttaggggctgc |
35163271 |
T |
|
| Q |
713 |
acc---tttgttttatgcctagccttt |
736 |
Q |
| |
|
||| |||||||| |||||||||||| |
|
|
| T |
35163272 |
acctcttttgttttgtgcctagccttt |
35163298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 514 - 594
Target Start/End: Original strand, 35163437 - 35163517
Alignment:
| Q |
514 |
gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggg |
594 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||| ||||||| |||||||| |
|
|
| T |
35163437 |
gattgtcctttgagaaaatagtgatagttttggtggactttgtcgaagtggtttatgttttttgtggtgtgctctcgaggg |
35163517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 514 - 736
Target Start/End: Complemental strand, 30403223 - 30403001
Alignment:
| Q |
514 |
gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggt |
613 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||| ||||||||||| ||||| |||||| || ||||||||||||| | | | || |
|
|
| T |
30403223 |
gattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtgtgttcttgaggggcagcaggct--gtgtagt |
30403126 |
T |
|
| Q |
614 |
gcctcaaggttggctgcgtgaggttgctggt-ttttaggtagcaggtttatggttactgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgc |
712 |
Q |
| |
|
|| || ||||||||||||||| ||||| | |||||| |||||| ||| ||||| ||| | |||||||||| ||| |||| ||| |||| || ||||| |
|
|
| T |
30403125 |
gcatctttgttggctgcgtgaggctgctgctattttagatagcagatttttggtt-ttgttactaggaaccgttgtgatgttggtg-ttttaggggctgc |
30403028 |
T |
|
| Q |
713 |
acc---tttgttttatgcctagccttt |
736 |
Q |
| |
|
||| |||||||| |||||||||||| |
|
|
| T |
30403027 |
acctcttttgttttgtgcctagccttt |
30403001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 514 - 736
Target Start/End: Complemental strand, 30409780 - 30409558
Alignment:
| Q |
514 |
gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggt |
613 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||| ||||||||||| ||||| |||||| || ||||||||||||| | | | || |
|
|
| T |
30409780 |
gattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtgtgttcttgaggggcagcaggct--gtgtagt |
30409683 |
T |
|
| Q |
614 |
gcctcaaggttggctgcgtgaggttgctggt-ttttaggtagcaggtttatggttactgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgc |
712 |
Q |
| |
|
|| || ||||||||||||||| ||||| | |||||| |||||| ||| ||||| ||| | |||||||||| ||| |||| ||| |||| || ||||| |
|
|
| T |
30409682 |
gcatctttgttggctgcgtgaggctgctgctattttagatagcagatttttggtt-ttgttactaggaaccgttgtgatgttggtg-ttttaggggctgc |
30409585 |
T |
|
| Q |
713 |
acc---tttgttttatgcctagccttt |
736 |
Q |
| |
|
||| |||||||| |||||||||||| |
|
|
| T |
30409584 |
acctcttttgttttgtgcctagccttt |
30409558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 514 - 736
Target Start/End: Complemental strand, 29394378 - 29394156
Alignment:
| Q |
514 |
gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggt |
613 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||| ||||||||||| ||| | |||||| || |||||||||||| | | | || |
|
|
| T |
29394378 |
gattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgtttttcgtggtgtgttcttgaggggcagcagact--gtgtagt |
29394281 |
T |
|
| Q |
614 |
gcctcaaggttggctgcgtgaggttgctggt-ttttaggtagcaggtttatggttactgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgc |
712 |
Q |
| |
|
|| || ||| ||||||||||| ||||| | |||||| || ||||||| ||||| |||||| |||||||||| ||| |||| ||| |||| || ||||| |
|
|
| T |
29394280 |
gcatctttgttagctgcgtgaggctgctgctattttagataacaggtttttggtt-ctgtcactaggaaccgttgtgatgttggtg-ttttaggggctgc |
29394183 |
T |
|
| Q |
713 |
acc---tttgttttatgcctagccttt |
736 |
Q |
| |
|
||| |||||||| |||||||||||| |
|
|
| T |
29394182 |
acctcttttgttttgtgcctagccttt |
29394156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 514 - 602
Target Start/End: Complemental strand, 29394017 - 29393929
Alignment:
| Q |
514 |
gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcagg |
602 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||| | ||||| ||||||| ||||||| |
|
|
| T |
29394017 |
gattgtcctttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtgatgtgctctcgaggaacagcagg |
29393929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 523 - 642
Target Start/End: Complemental strand, 30409410 - 30409293
Alignment:
| Q |
523 |
ttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggtgcctcaagg |
622 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||| | | |||||||||| | |
|
|
| T |
30409410 |
ttgagaaaatagtgatagttttggtggactctgtcgaggtggtttatgttttttgtggtgtgctctcgaaggacagcaggct--gtgtggtgcctcagtg |
30409313 |
T |
|
| Q |
623 |
ttggctgcgtgaggttgctg |
642 |
Q |
| |
|
|| ||||||||||| ||||| |
|
|
| T |
30409312 |
tttgctgcgtgagggtgctg |
30409293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 602
Target Start/End: Complemental strand, 30402853 - 30402774
Alignment:
| Q |
523 |
ttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcagg |
602 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||| ||||||| ||| ||||| ||||||| ||||| || ||||||| |
|
|
| T |
30402853 |
ttgagaaaatagtgatagttttggtggactctgtcgaggtggtttatgttttttgtggtgtgctctcgaaggacagcagg |
30402774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 2e-51; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 4078349 - 4078468
Alignment:
| Q |
8 |
aaagcggcggaggtcggagcaggttgtgatggacggtctcgcaatttaaaggttgtgtacc-atttgattaattcattctccaagtttcaatttatcatt |
106 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4078349 |
aaagcggcggaggtcggagctggttgtgatggacggtctcgcaatttaaaagttgtgtacccatttgattaattcattctccaagtttcaatttatcatt |
4078448 |
T |
|
| Q |
107 |
cttatttaatcttaaactaa |
126 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4078449 |
cttatttaatcttaaactaa |
4078468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 8 - 126
Target Start/End: Complemental strand, 16351680 - 16351561
Alignment:
| Q |
8 |
aaagcggcggaggtcggagcaggttgtgatggacggtctcgcaatttaaaggttgtgtacc-atttgattaattcattctccaagtttcaatttatcatt |
106 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16351680 |
aaagcggcagaggtcggagctggttgtgatggacggtctcgcaatttaaaagttgtgtacccatttgattaattcattctccaagcttcaatttatcatt |
16351581 |
T |
|
| Q |
107 |
cttatttaatcttaaactaa |
126 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
16351580 |
cttatttaatcttaaactaa |
16351561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 514 - 694
Target Start/End: Complemental strand, 9260951 - 9260773
Alignment:
| Q |
514 |
gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggt |
613 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| ||||| ||||||| |||||||||||||||| | | | || |
|
|
| T |
9260951 |
gattgtctgttgagaaaatagtgatagttttggtggattttgtcgaggtggtttctgttttttgtggtgtgctctcgaggggcagcaggct--gtgtagt |
9260854 |
T |
|
| Q |
614 |
gcctcaaggttggctgcgtgaggttgctggt-ttttaggtagcaggtttatggttactgtcattaggaaccgtagtgttgtt |
694 |
Q |
| |
|
||||| ||||||||||||||| ||||| | |||||| |||||||||| ||||| |||||| |||||||||| ||| |||| |
|
|
| T |
9260853 |
gcctctgtgttggctgcgtgaggctgctgctattttagatagcaggtttttggtt-ctgtcactaggaaccgttgtgatgtt |
9260773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 514 - 602
Target Start/End: Complemental strand, 9260588 - 9260500
Alignment:
| Q |
514 |
gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcagg |
602 |
Q |
| |
|
|||||||| |||||||||||| | |||||||||||||||||||||| ||||||| ||| ||||| |||||| |||||||| ||||||| |
|
|
| T |
9260588 |
gattgtcttttgagaaaatagcgatagttttggtggactttgtcgaggtggtttttgttttttgtagtgtgctctcgagggacagcagg |
9260500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 16351532 - 16351491
Alignment:
| Q |
163 |
aggttatccaccttcctctaatcccccaatcatgtaagtcat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16351532 |
aggttatccaccttcctctaatcccccaatcatgtaagtcat |
16351491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 4078497 - 4078538
Alignment:
| Q |
163 |
aggttatccaccttcctctaatcccccaatcatgtaagtcat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4078497 |
aggttatccaccttcctctaatcccccaatcatgaaagtcat |
4078538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 6e-33; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 514 - 736
Target Start/End: Complemental strand, 1604185 - 1603964
Alignment:
| Q |
514 |
gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggt |
613 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||| | | | || |
|
|
| T |
1604185 |
gattgtcttttgagaaaatagtgatagttttggtggactttgtcgatgtggtttctgttttttgtggtgtgttctcgaggggcagcaggat--gtgtagt |
1604088 |
T |
|
| Q |
614 |
gcctcaaggttggctgcgtgaggttgctggtttttaggtagcaggtttatggttactgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgca |
713 |
Q |
| |
|
||||| ||||||||||||||| ||||| | ||||| |||||||||| ||||| |||||| |||||| ||| || |||| ||| |||| || |||||| |
|
|
| T |
1604087 |
gcctctttgttggctgcgtgaggctgctgctatttagatagcaggtttttggtt-ctgtcactaggaatcgttatgatgttggtg-ttttaggggctgca |
1603990 |
T |
|
| Q |
714 |
cc---tttgttttatgcctagccttt |
736 |
Q |
| |
|
|| |||||||| |||||||||||| |
|
|
| T |
1603989 |
cctcttttgttttgtgcctagccttt |
1603964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 514 - 736
Target Start/End: Original strand, 11143831 - 11144053
Alignment:
| Q |
514 |
gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggt |
613 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| |||||||||| ||||||||||| ||||| |||||| || ||||||||||||| | | | || |
|
|
| T |
11143831 |
gattgtcttttgagaaaatagtgatagttttggtatactttgtcgaggtggtttctgttttttgtggtgtgttcttgaggggcagcaggct--gtgtagt |
11143928 |
T |
|
| Q |
614 |
gcctcaaggttggctgcgtgaggttgctggt-ttttaggtagcaggtttatggttactgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgc |
712 |
Q |
| |
|
|| || ||||||||||||||| ||||| | |||||| |||||||||| ||||| |||||| |||||||||| ||| |||| ||| |||| || ||||| |
|
|
| T |
11143929 |
gcatctttgttggctgcgtgaggctgctgctattttagatagcaggtttttggtt-ctgtcactaggaaccgttgtgatgttggtg-ttttaggggctgc |
11144026 |
T |
|
| Q |
713 |
acc---tttgttttatgcctagccttt |
736 |
Q |
| |
|
||| |||||||| |||||||||||| |
|
|
| T |
11144027 |
acctcttttgttttgtgcctagccttt |
11144053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 528 - 736
Target Start/End: Original strand, 44551873 - 44552080
Alignment:
| Q |
528 |
aaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggtgcctcaaggttggc |
627 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||||||| ||||| ||||| | |||||||||||||||| | | | ||||||| |||||| |
|
|
| T |
44551873 |
aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttgtggtgttctctcgaggggcagcaggct--gtgtagtgcctctgtgttggc |
44551969 |
T |
|
| Q |
628 |
tgcgtgaggttgctggt-ttttaggtagcaggtttatggttactgtcattaggaaccgtagtgttgtttgtgcttttgggtgctgca---cctttgtttt |
723 |
Q |
| |
|
||||||||| ||||| | ||||||||||||||||| ||||| ||||| | |||||||| ||| |||| ||| |||| || |||||| | |||||||| |
|
|
| T |
44551970 |
tgcgtgaggctgctgctattttaggtagcaggtttttggtt-ttgtcactcggaaccgttgtgatgttggtg-ttttaggggctgcatctcttttgtttt |
44552067 |
T |
|
| Q |
724 |
atgcctagccttt |
736 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44552068 |
gtgcctagccttt |
44552080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 523 - 602
Target Start/End: Original strand, 11144201 - 11144280
Alignment:
| Q |
523 |
ttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcagg |
602 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||| ||||||| ||||| || ||||||| |
|
|
| T |
11144201 |
ttgagaaaatagtgatagttttggtggactttgtcgaggtggtttatgttttttgtggtgtgctctcgaaggacagcagg |
11144280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 514 - 642
Target Start/End: Complemental strand, 1661573 - 1661447
Alignment:
| Q |
514 |
gattgtctgttgagaaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcaggtttgttttggt |
613 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||| ||||| ||||||| ||| |||| ||||||| |||||||| ||||||| | | |||| |
|
|
| T |
1661573 |
gattgtcctttgagaaaatagtgatagttttggtggacttcgtcgaggtggtttatgttttttatggtgtgctctcgagggacagcaggct--gtgtggt |
1661476 |
T |
|
| Q |
614 |
gcctcaaggttggctgcgtgaggttgctg |
642 |
Q |
| |
|
||||| ||||||||||||||| ||||| |
|
|
| T |
1661475 |
gcctctgtgttggctgcgtgagggtgctg |
1661447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1243 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold1243
Description:
Target: scaffold1243; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 284 - 398
Target Start/End: Complemental strand, 116 - 1
Alignment:
| Q |
284 |
gaaagatttgttttg-taattaagcgctttgatttggtcatgttgtgtgctctgatatgtgatggctgattcaaagtgcatcgacaaagattttcatgac |
382 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| | ||| | ||||||| | ||||| |||||| |||||||||| |
|
|
| T |
116 |
gaaagatttgttttgctaattaagcgctttgatttagtcatgttgtgtgctttgatttctgaagattgattcacattgcattgacaaaatttttcatgac |
17 |
T |
|
| Q |
383 |
tatttctacgcctttc |
398 |
Q |
| |
|
| ||||||| |||||| |
|
|
| T |
16 |
tgtttctacacctttc |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 538 - 602
Target Start/End: Original strand, 32445859 - 32445923
Alignment:
| Q |
538 |
tagttttggtggactttgtcgaagtggtttctgtcttttgcggtgtgccctcgaggggcagcagg |
602 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
32445859 |
tagttttggtggactttgtcgaggtggtttctgttttttgtggtgtgctctcgaggggcagcagg |
32445923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 528 - 577
Target Start/End: Complemental strand, 14987002 - 14986954
Alignment:
| Q |
528 |
aaaatagtggtagttttggtggactttgtcgaagtggtttctgtcttttg |
577 |
Q |
| |
|
||||||||| |||||||||||||||||||||| || |||||||| ||||| |
|
|
| T |
14987002 |
aaaatagtgatagttttggtggactttgtcgaggt-gtttctgttttttg |
14986954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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