View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5536-Insertion-4 (Length: 730)

Name: NF5536-Insertion-4
Description: NF5536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5536-Insertion-4
NF5536-Insertion-4
[»] chr5 (8 HSPs)
chr5 (8-528)||(20228964-20229486)
chr5 (228-373)||(17663270-17663417)
chr5 (308-385)||(17667267-17667345)
chr5 (454-539)||(8217121-8217205)
chr5 (459-543)||(18401224-18401308)
chr5 (621-665)||(20228871-20228915)
chr5 (441-513)||(22017651-22017723)
chr5 (482-543)||(7765248-7765309)
[»] chr2 (8 HSPs)
chr2 (26-231)||(560642-560846)
chr2 (30-132)||(515494-515596)
chr2 (441-543)||(13019646-13019748)
chr2 (459-527)||(34190799-34190866)
chr2 (441-524)||(38308073-38308156)
chr2 (441-515)||(43050153-43050226)
chr2 (474-515)||(5867943-5867984)
chr2 (473-545)||(13378425-13378498)
[»] chr7 (6 HSPs)
chr7 (228-373)||(14684704-14684851)
chr7 (440-543)||(17115895-17115998)
chr7 (441-515)||(20953228-20953302)
chr7 (441-516)||(22713418-22713493)
chr7 (493-543)||(31459419-31459469)
chr7 (474-543)||(40256820-40256889)
[»] chr6 (6 HSPs)
chr6 (441-525)||(9929325-9929408)
chr6 (441-541)||(30525819-30525919)
chr6 (441-539)||(29263809-29263907)
chr6 (463-542)||(6355732-6355811)
chr6 (445-524)||(31596531-31596610)
chr6 (471-524)||(29389189-29389242)
[»] chr4 (2 HSPs)
chr4 (240-366)||(40393158-40393288)
chr4 (471-512)||(38303296-38303337)
[»] chr8 (7 HSPs)
chr8 (441-515)||(4656575-4656649)
chr8 (442-543)||(37507549-37507649)
chr8 (441-541)||(40899641-40899739)
chr8 (484-542)||(26462348-26462406)
chr8 (458-532)||(39555881-39555954)
chr8 (441-543)||(27157671-27157772)
chr8 (441-522)||(7632687-7632768)
[»] chr3 (4 HSPs)
chr3 (457-538)||(32998765-32998846)
chr3 (441-490)||(42110963-42111012)
chr3 (493-525)||(31219199-31219231)
chr3 (458-512)||(33995656-33995709)
[»] chr1 (1 HSPs)
chr1 (482-543)||(7439108-7439169)


Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 8 - 528
Target Start/End: Complemental strand, 20229486 - 20228964
Alignment:
Q  8 ttggacacatacatgagtattattggttattggagtgtgtagcagtttagcaaagacctcatcagtgtgaggcttggcgaggagatcaactgcggaaatg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20229486 ttggacacatacatgagtattattggttattggagtgtgtagcagtttagcaaagacctcatcagtgtgaggcttggcgaggagatcaactgcggaaatg 20229387  T
Q  108 atacagatagtgaaagaacgaaaacgttgcaagatcaagggagtgaaagtgatcattggaggaggaagaagaagcatattctaagtggccttgtggaaaa 207  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20229386 atacggatagtgaaaggacgaaaacgttgcaagatcaagggagtgaaagtgatcattggaggaggaagaagaagcatattctaagtggccttgtggaaaa 20229287  T
Q  208 tagtaaactcttgaatgcaactttaatggcttggagaagaaagcaagtgatagtagaagaggaagaaatttctgtaaga--atatgagatgcttagcaac 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||    
T  20229286 tagtaaactcttgaatgcaactttaatggcttggagaagaaagcaagtgatagtagaagaggaagaaatttctgtaagaacagatgagatgcttagcaac 20229187  T
Q  306 tataggggttgcttacaattgttatttctaaatgtgtattttgaatgttctaattgtaattgaaatttcaggtagagctaaatatatgaccgcttctttt 405  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| ||||| |||||||||||| |||||||||    
T  20229186 tataggggttgcttacaattgttatttctaaatgtgtagtttgaatgttctaattgtaattgtaa-ttcagttagagttaaatatatgactgcttctttt 20229088  T
Q  406 cttactttataagtttctcgtgggtcctatgt-gttattatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttca 504  Q
    |||||||||||||||| |||||||| |||||| ||||||||  ||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  20229087 cttactttataagtttttcgtgggtactatgtagttattatgaaatccgaatgacataaatacctcataaaaatcttcaaaaacacaatgaaacatttca 20228988  T
Q  505 gattttaaaatttgaataggacac 528  Q
    |||||| |||||||||||||||||    
T  20228987 gatttttaaatttgaataggacac 20228964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 228 - 373
Target Start/End: Original strand, 17663270 - 17663417
Alignment:
Q  228 ctttaatggcttggagaagaaagcaagtgatagtagaagaggaagaaatttctgtaagaa--tatgagatgcttagcaactataggggttgcttacaatt 325  Q
    |||||||| |||||| ||||||||| ||||||||||||||| |||||||||||| |||||  ||||||||||||||||| ||||||||||||| |   ||    
T  17663270 ctttaatgccttggaaaagaaagcatgtgatagtagaagagtaagaaatttctgcaagaacatatgagatgcttagcaattataggggttgctcattttt 17663369  T
Q  326 gttatttctaaatgtgtattttgaatgttctaattgtaattgaaattt 373  Q
    ||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  17663370 gttgtttctaaatgtgtaatttgaatgttctaattgtaattgtaattt 17663417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 308 - 385
Target Start/End: Original strand, 17667267 - 17667345
Alignment:
Q  308 taggggttgcttacaattgttatttctaaatgtgtattttgaatgttctaattgtaattg-aaatttcaggtagagcta 385  Q
    ||||||||||||||  |||||||||||||||||| | ||||| ||||||||||||||||| || |||||| ||||||||    
T  17667267 taggggttgcttactgttgttatttctaaatgtgcagtttgactgttctaattgtaattgtaattttcagttagagcta 17667345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 454 - 539
Target Start/End: Complemental strand, 8217205 - 8217121
Alignment:
Q  454 aatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactc 539  Q
    ||||||||||| ||| |||||||||||| ||||||||  | ||||||||||||||||| |||||||||||| | ||||| ||||||    
T  8217205 aatgacataaacaccccataaaaatctc-aaaaacacgttaaaacatttcagattttagaatttgaatagggcgcgcgagaaactc 8217121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 459 - 543
Target Start/End: Complemental strand, 18401308 - 18401224
Alignment:
Q  459 cataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactcatag 543  Q
    |||||| |||||||| | | ||||||||||||  |||||||||||||||| || ||| ||||||| |||||||| ||||||||||    
T  18401308 cataaacacctcatacagacctccaaaaacacgttgaaacatttcagattctataatctgaatagaacacgcgataaactcatag 18401224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 621 - 665
Target Start/End: Complemental strand, 20228915 - 20228871
Alignment:
Q  621 gtctttttgaattaggtttaactcttggttccaatgtaaatatta 665  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  20228915 gtctttttgaattaggttcaactcttggttccaatgtaaatatta 20228871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 441 - 513
Target Start/End: Complemental strand, 22017723 - 22017651
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaa 513  Q
    |||||||||| |||||| |||||| ||| |||||||| |||||||||| |  |||||||||||||||||||||    
T  22017723 attatagaatccgaatggcataaacaccccataaaaacctccaaaaacgcgttgaaacatttcagattttaaa 22017651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 543
Target Start/End: Original strand, 7765248 - 7765309
Alignment:
Q  482 caaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactcatag 543  Q
    |||||||||  ||||| ||||| |||||||||||||||||| ||| | | ||||||||||||    
T  7765248 caaaaacacgttgaaatatttcggattttaaaatttgaataagacgcacaaaaaactcatag 7765309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 9e-72; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 26 - 231
Target Start/End: Complemental strand, 560846 - 560642
Alignment:
Q  26 attattggttattggagtgtgtagcagtttagcaaagacctcatcagtgtgaggcttggcgaggagatcaactgcggaaatgatacagatagtgaaagaa 125  Q
    |||||||||||  |||||| | ||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||| |    
T  560846 attattggttacaggagtgagcagcagtttagcgaagacctcatcagtgtgaggatcggcgaggagatcaacagcggagatgatacagatagtgaaagga 560747  T
Q  126 cgaaaacgttgcaagatcaagggagtgaaagtgatcattggaggaggaagaagaagcatattctaagtggccttgtggaaaatagtaaactcttgaatgc 225  Q
    ||||||||||| ||||||||||||||||| || | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  560746 cgaaaacgttg-aagatcaagggagtgaatgtaagcattggaggaggaagaagaagcatgttctaagtggccttgtggaaaatagtaaactctggaatgc 560648  T
Q  226 aacttt 231  Q
    ||||||    
T  560647 aacttt 560642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 515494 - 515596
Alignment:
Q  30 ttggttattggagtgtgtagcagtttagcaaagacctcatcagtgtgaggcttggcgaggagatcaactgcggaaatgatacagatagtgaaagaacgaa 129  Q
    ||||||||||||||  |||| |||||| ||||||||||||| |||||||| | ||| ||||||||||| ||||| |  ||||| | |||||||| |||||    
T  515494 ttggttattggagtaagtagaagtttaacaaagacctcatccgtgtgaggatcggcaaggagatcaacagcggagacaatacaaagagtgaaaggacgaa 515593  T
Q  130 aac 132  Q
    |||    
T  515594 aac 515596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 441 - 543
Target Start/End: Original strand, 13019646 - 13019748
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactca 540  Q
    |||||||||| |||| | |||||| ||  ||||||||||| ||||| |||| |||||| ||||||||||| ||||  ||| ||||||||||| |||||||    
T  13019646 attatagaatccgaacggcataaacactccataaaaatcttcaaaatcacattgaaacgtttcagattttcaaatccgaaaaggacacgcgagaaactca 13019745  T
Q  541 tag 543  Q
    |||    
T  13019746 tag 13019748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 459 - 527
Target Start/End: Complemental strand, 34190866 - 34190799
Alignment:
Q  459 cataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggaca 527  Q
    |||||| ||||||||||||||| | |||||||| | |||||||||| |||||| |||| ||||||||||    
T  34190866 cataaacacctcataaaaatcttccaaaacacattaaaacatttca-attttagaattcgaataggaca 34190799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 524
Target Start/End: Original strand, 38308073 - 38308156
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaatagg 524  Q
    |||||||||| |||| | |||||| |||  |||||||  | |||||||||  |||||||||||||||||||||| | |||||||    
T  38308073 attatagaatccgaacggcataaacaccctataaaaactttcaaaaacacgttgaaacatttcagattttaaaactagaatagg 38308156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 441 - 515
Target Start/End: Complemental strand, 43050226 - 43050153
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaat 515  Q
    |||||||||| | || ||||||||||||   |||||| |||||||| |||  |||||||||||||||||||||||    
T  43050226 attatagaatccaaacgacataaataccctgtaaaaacctccaaaa-cacgttgaaacatttcagattttaaaat 43050153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 515
Target Start/End: Complemental strand, 5867984 - 5867943
Alignment:
Q  474 aaaatctccaaaaacacagtgaaacatttcagattttaaaat 515  Q
    |||||||||||||||||  ||||| |||||||||||||||||    
T  5867984 aaaatctccaaaaacacgttgaaatatttcagattttaaaat 5867943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 473 - 545
Target Start/End: Original strand, 13378425 - 13378498
Alignment:
Q  473 aaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaatagg-acacgcgaaaaactcatagtg 545  Q
    ||||| ||||||||||||| ||||| ||||||||||||| |||  ||||||| ||||| || ||||| ||||||    
T  13378425 aaaaacctccaaaaacacattgaaatatttcagattttataatccgaataggaacacgtgagaaactaatagtg 13378498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 1e-37; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 228 - 373
Target Start/End: Complemental strand, 14684851 - 14684704
Alignment:
Q  228 ctttaatggcttggagaagaaagcaagtgatagtagaagaggaagaaatttctgtaagaa--tatgagatgcttagcaactataggggttgcttacaatt 325  Q
    |||||||| |||||| ||||||||| |||||||| |||||| |||||||||||| |||||  ||||||||||||||||| ||||||||||||| |   ||    
T  14684851 ctttaatgccttggaaaagaaagcatgtgatagttgaagagtaagaaatttctgcaagaacatatgagatgcttagcaattataggggttgctcattttt 14684752  T
Q  326 gttatttctaaatgtgtattttgaatgttctaattgtaattgaaattt 373  Q
    ||| |||||||||||||| ||||||||||||||||||||||| |||||    
T  14684751 gttgtttctaaatgtgtaatttgaatgttctaattgtaattgcaattt 14684704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 440 - 543
Target Start/End: Complemental strand, 17115998 - 17115895
Alignment:
Q  440 tattatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactc 539  Q
    |||||||||||||||| |||||||| ||| ||||||||  | |||||||||  ||||| |||| ||||||||||||   ||||| || || | |||||||    
T  17115998 tattatagaattcgaacgacataaacaccccataaaaactttcaaaaacacgttgaaatattttagattttaaaatccaaatagaacgcgaggaaaactc 17115899  T
Q  540 atag 543  Q
    ||||    
T  17115898 atag 17115895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 441 - 515
Target Start/End: Complemental strand, 20953302 - 20953228
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaat 515  Q
    |||||||||||||||  ||||||||| || |||||| |||| |||||||   |||||||||| ||||||||||||    
T  20953302 attatagaattcgaacaacataaatatcttataaaattctcaaaaaacatgttgaaacattttagattttaaaat 20953228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 441 - 516
Target Start/End: Original strand, 22713418 - 22713493
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatt 516  Q
    |||||| ||| |||||| |||||| |||   |||||| ||||||||||||  ||||| ||||||||||||||||||    
T  22713418 attataaaatccgaatggcataaacaccctgtaaaaacctccaaaaacacgttgaaatatttcagattttaaaatt 22713493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 493 - 543
Target Start/End: Complemental strand, 31459469 - 31459419
Alignment:
Q  493 tgaaacatttcagattttaaaatttgaataggacacgcgaaaaactcatag 543  Q
    ||||| ||||| |||||||||||||||||||||||| ||| ||||| ||||    
T  31459469 tgaaatatttcggattttaaaatttgaataggacacacgagaaacttatag 31459419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 474 - 543
Target Start/End: Complemental strand, 40256889 - 40256820
Alignment:
Q  474 aaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactcatag 543  Q
    |||| ||||||||||||  || || |||||||||||||||||  ||||| | | ||||||||||||||||    
T  40256889 aaaacctccaaaaacacgttgcaatatttcagattttaaaatccgaataaggcgcgcgaaaaactcatag 40256820  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 441 - 525
Target Start/End: Complemental strand, 9929408 - 9929325
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaatagga 525  Q
    ||||||||||||||| | |||||| |||||||||||| |||| |||||||  ||||| ||||||||||||||||| | |||||||    
T  9929408 attatagaattcgaacgtcataaacacctcataaaaacctcc-aaaacacgttgaaagatttcagattttaaaatctaaatagga 9929325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 441 - 541
Target Start/End: Original strand, 30525819 - 30525919
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactca 540  Q
    |||||||||| |||| | |||||| | |||||||||| ||||||||||||  ||||||||||| |||| || |||| ||||| | ||||| |||||||||    
T  30525819 attatagaatccgaacggcataaacatctcataaaaacctccaaaaacacgttgaaacatttcggattctataattcgaatatggcacgcaaaaaactca 30525918  T
Q  541 t 541  Q
    |    
T  30525919 t 30525919  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 441 - 539
Target Start/End: Original strand, 29263809 - 29263907
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactc 539  Q
    ||||||||||  ||| |||||||| |||  |||||||||| |||||||||| ||||||||||  ||||||||||| |||||| |||  |||| ||||||    
T  29263809 attatagaatctgaacgacataaacacccaataaaaatcttcaaaaacacattgaaacattttcgattttaaaatctgaataagacgtgcgagaaactc 29263907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 463 - 542
Target Start/End: Original strand, 6355732 - 6355811
Alignment:
Q  463 aatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactcata 542  Q
    |||||||||||||||  || ||||| ||| ||||| |||| |||||||||||||  |||||||||| ||| |||||||||    
T  6355732 aatacctcataaaaacatctaaaaatacattgaaatattttagattttaaaattcaaataggacacacgagaaactcata 6355811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 445 - 524
Target Start/End: Original strand, 31596531 - 31596610
Alignment:
Q  445 tagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaatagg 524  Q
    ||||||| ||| | |||||| |||  ||||||  ||||||||||||  |||||||||||||||||||||||| |||||||    
T  31596531 tagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg 31596610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 524
Target Start/End: Original strand, 29389189 - 29389242
Alignment:
Q  471 ataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaatagg 524  Q
    ||||||| || |||||||||  ||||||||||| ||||||||||| ||||||||    
T  29389189 ataaaaaccttcaaaaacacgttgaaacatttcggattttaaaatctgaatagg 29389242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 240 - 366
Target Start/End: Original strand, 40393158 - 40393288
Alignment:
Q  240 ggagaagaaagcaagtgatagtagaagaggaagaaatttctgt----aagaa--tatgagatgcttagcaactataggggttgcttacaattgttatttc 333  Q
    |||||||| |||| || | ||| |||||||||||||||||||     |||||  |||||||||||||||| ||||||||||||||    |||||||||||    
T  40393158 ggagaagatagcatgtcacagtggaagaggaagaaatttctggcaagaagaacatatgagatgcttagcagctataggggttgct---cattgttatttc 40393254  T
Q  334 taaa-tgtgtattttgaatgttctaattgtaatt 366  Q
    |||| |||||| |||||||| ||| |||||||||    
T  40393255 taaattgtgtagtttgaatggtctcattgtaatt 40393288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 512
Target Start/End: Complemental strand, 38303337 - 38303296
Alignment:
Q  471 ataaaaatctccaaaaacacagtgaaacatttcagattttaa 512  Q
    ||||||| |||||||||| || ||||||||||||||||||||    
T  38303337 ataaaaacctccaaaaacgcattgaaacatttcagattttaa 38303296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 441 - 515
Target Start/End: Original strand, 4656575 - 4656649
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaat 515  Q
    |||||||||| |||| ||||||||||| ||||||||| ||  ||||||||| | |||||||||||||| ||||||    
T  4656575 attatagaatccgaacgacataaatacatcataaaaacctttaaaaacacattaaaacatttcagattctaaaat 4656649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 442 - 543
Target Start/End: Complemental strand, 37507649 - 37507549
Alignment:
Q  442 ttatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactcat 541  Q
    |||||||||  ||| |||||||||||| |||||||| |||| |||||||  ||||||||||| ||||||| |||| ||||||| | ||| | ||||||||    
T  37507649 ttatagaatctgaacgacataaataccccataaaaacctcc-aaaacacgttgaaacatttcggattttagaattcgaatagggcgcgcaagaaactcat 37507551  T
Q  542 ag 543  Q
    ||    
T  37507550 ag 37507549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 441 - 541
Target Start/End: Complemental strand, 40899739 - 40899641
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactca 540  Q
    |||||| |||||||| | |||||| ||| |||||||| || |||||||||  | ||| ||||||||||||||||| ||||||||   |||||||||||||    
T  40899739 attataaaattcgaaaggcataaacaccccataaaaaccttcaaaaacacgttaaaatatttcagattttaaaatctgaatagg--gcgcgaaaaactca 40899642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 484 - 542
Target Start/End: Complemental strand, 26462406 - 26462348
Alignment:
Q  484 aaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactcata 542  Q
    |||||||  ||||||||||||||||||| ||||||||||||||   |||||||||||||    
T  26462406 aaaacacgttgaaacatttcagattttataatttgaataggacgtacgaaaaactcata 26462348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 458 - 532
Target Start/End: Complemental strand, 39555954 - 39555881
Alignment:
Q  458 acataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcga 532  Q
    ||||||| |||  ||||||||||| ||||||||  ||||||||||||||||||||||| |||| ||||| |||||    
T  39555954 acataaacaccctataaaaatctc-aaaaacacgttgaaacatttcagattttaaaatctgaacaggacgcgcga 39555881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 441 - 543
Target Start/End: Original strand, 27157671 - 27157772
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactca 540  Q
    |||||||||| |||||| |||||||||| ||||||| ||||||||| |||  ||||| | ||| ||||||| |||  |||||| || | ||| |||||||    
T  27157671 attatagaatccgaatggcataaataccccataaaa-tctccaaaaccacgttgaaataattcggattttagaatccgaatagcacgcacgagaaactca 27157769  T
Q  541 tag 543  Q
    |||    
T  27157770 tag 27157772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 441 - 522
Target Start/End: Complemental strand, 7632768 - 7632687
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaata 522  Q
    ||||||||||  ||| |||||||| |||  ||||||| || |||||| ||  ||||| |||||| |||||||||||||||||    
T  7632768 attatagaatctgaacgacataaacacccgataaaaaccttcaaaaatacgttgaaatatttcaaattttaaaatttgaata 7632687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 457 - 538
Target Start/End: Complemental strand, 32998846 - 32998765
Alignment:
Q  457 gacataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaact 538  Q
    |||||||| ||||||||||||||| |||||||||| ||||| ||||  ||| ||||||||  |||||| | ||| |||||||    
T  32998846 gacataaacacctcataaaaatcttcaaaaacacattgaaatattttggatcttaaaattcaaatagggcgcgcaaaaaact 32998765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 441 - 490
Target Start/End: Original strand, 42110963 - 42111012
Alignment:
Q  441 attatagaattcgaatgacataaatacctcataaaaatctccaaaaacac 490  Q
    ||||||||||||||| |||||||| ||| |||||||| ||||||||||||    
T  42110963 attatagaattcgaacgacataaacaccccataaaaacctccaaaaacac 42111012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 493 - 525
Target Start/End: Complemental strand, 31219231 - 31219199
Alignment:
Q  493 tgaaacatttcagattttaaaatttgaatagga 525  Q
    |||||||||||||||||||||||||||||||||    
T  31219231 tgaaacatttcagattttaaaatttgaatagga 31219199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 458 - 512
Target Start/End: Complemental strand, 33995709 - 33995656
Alignment:
Q  458 acataaatacctcataaaaatctccaaaaacacagtgaaacatttcagattttaa 512  Q
    ||||||||| | |||||||| |||||||| |||| ||||||||||||||||||||    
T  33995709 acataaatatcccataaaaacctccaaaa-cacattgaaacatttcagattttaa 33995656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 543
Target Start/End: Original strand, 7439108 - 7439169
Alignment:
Q  482 caaaaacacagtgaaacatttcagattttaaaatttgaataggacacgcgaaaaactcatag 543  Q
    |||||||||  ||||| |||| |||||||| |||||||||||||| ||||| || |||||||    
T  7439108 caaaaacacgttgaaatattttagattttagaatttgaataggacgcgcgagaatctcatag 7439169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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