View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5536-Insertion-5 (Length: 566)
Name: NF5536-Insertion-5
Description: NF5536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5536-Insertion-5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 523; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 8 - 566
Target Start/End: Original strand, 12952565 - 12953123
Alignment:
| Q |
8 |
tatagaactatcaacaagatccaagagttttccattatgagcaagttgtctagcccatgaaattagatttgctctctcgaattctgaaatcggtgatgct |
107 |
Q |
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| T |
12952565 |
tatagaactatcaacaagatccaagagttttccattatgagcaagttgtctagcccatgaaattagatttgctctctcgaattctgaaatcggtgatgct |
12952664 |
T |
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| Q |
108 |
gttacttgtaatggtcttcttccagcaaccagaaccaaaagcagaacaccgaaactatacacatcacatttctcggataattgaccaccactgccgtatt |
207 |
Q |
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| T |
12952665 |
gttacttgtaatggtcttcttccagcaaccagaaccaaaagcagaacaccgaaactatacacatcacatttctcggataattgaccaccaccaccgtatt |
12952764 |
T |
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| Q |
208 |
caggagcaatgtaacaaacagttcctctcatactcggtgtgctacttattccaccactcttcggtatatcaccattaccccaatcttgactatttctcct |
307 |
Q |
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| T |
12952765 |
caggagcaatgtaacaaacagttcctctcatactcggtgtgctacttattccaccactcttcggtatatcaccattaccccaatcttgactatttctcct |
12952864 |
T |
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| Q |
308 |
tgcgttagtcctaagctcgccgcttaaaccatccaaccaccaatcaatactccctctactactcttacttttcctctttttctttttctctactgctgcg |
407 |
Q |
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| T |
12952865 |
tccgttagtcctaagctcgccgcttaaaccatccaaccaccaatcaatactccctctactactcttacttttcctctttttcttcttctctaatggtggg |
12952964 |
T |
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| Q |
408 |
ccgcctacatcctcgtctctctgccaccacgattcccctccattgccgcgacaatcaaggcttctctttttcttcctactcttcttcgaaagctcttcac |
507 |
Q |
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| T |
12952965 |
ccgcctacatccttgtctctctgccaccacgattcccctccattgccgcgacaatcaaggcttctctttttcttcctactcttcttcgaaagctcttcac |
12953064 |
T |
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| Q |
508 |
aaaattcctccttccaccattcccttggtttcctattcttctttcctttaactttctcc |
566 |
Q |
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| T |
12953065 |
aaaattcctccttccaccattcccttggttttctattcttctttcctttaactttctcc |
12953123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 206 - 268
Target Start/End: Complemental strand, 46223400 - 46223338
Alignment:
| Q |
206 |
ttcaggagcaatgtaacaaacagttcctctcatactcggtgtgctacttattccaccactctt |
268 |
Q |
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| T |
46223400 |
ttcaggagcaacataaaaaacagttcctctcatacttggagtactactaatttcaccactctt |
46223338 |
T |
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