View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5536-Insertion-6 (Length: 310)

Name: NF5536-Insertion-6
Description: NF5536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5536-Insertion-6
NF5536-Insertion-6
[»] chr2 (1 HSPs)
chr2 (7-310)||(3110426-3110728)
[»] chr7 (2 HSPs)
chr7 (169-214)||(32888971-32889016)
chr7 (152-204)||(1791416-1791468)
[»] chr3 (3 HSPs)
chr3 (169-213)||(8936736-8936780)
chr3 (169-204)||(1138433-1138468)
chr3 (163-204)||(38692426-38692467)
[»] chr1 (2 HSPs)
chr1 (169-213)||(6025952-6025996)
chr1 (169-202)||(1118943-1118976)
[»] chr6 (2 HSPs)
chr6 (169-219)||(2732971-2733021)
chr6 (169-202)||(2730831-2730864)
[»] chr8 (2 HSPs)
chr8 (169-213)||(26445499-26445543)
chr8 (186-214)||(34620045-34620073)
[»] chr4 (1 HSPs)
chr4 (169-205)||(47789198-47789234)


Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 310
Target Start/End: Complemental strand, 3110728 - 3110426
Alignment:
Q  7 aagttcagttcaggtaagactcgtttgcttatgaaataagatactgctatcgaaatcactgtatgactattgcagaatgaaaactaagagtgattctgat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3110728 aagttcagttcaggtaagactcgtttgcttatgaaataagatactgctatcgaaatcactgtatgaatattgcagaatgaaaactaagagtgattctgat 3110629  T
Q  107 ggcggcaatagtgttacaacatggcagaatttgaacaaacaattgttgttgggcattacacaatttagtacaaagcgttgtcaaatagtggctatagcgg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3110628 ggcggcaatagtgttacaacatggcagaatttgaacaaacaattgttgttgggcattacactatttagtacaaagcgttgtcaaatagtggctatagcgg 3110529  T
Q  207 cgctataatactaaaagtgttttgaataaaccgctattttccgcaatctacgatggacaacactattacagatcaaccaaattttccttaaactaatccc 306  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3110528 cgctataatact-aaagtgttttgaataaaccgctattttccgcaatctacgatggacaacactattacagatcaaccaaattttccttaaactaatccc 3110430  T
Q  307 atgc 310  Q
    ||||    
T  3110429 atgc 3110426  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 32888971 - 32889016
Alignment:
Q  169 atttagtacaaagcgttgtcaaatagtggctatagcggcgctataa 214  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||    
T  32888971 atttagtacaaagtattgtcaaatagtggctattgcggcgctataa 32889016  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 204
Target Start/End: Complemental strand, 1791468 - 1791416
Alignment:
Q  152 ttgttgggcattacacaatttagtacaaagcgttgtcaaatagtggctatagc 204  Q
    |||||| ||||| |||||||||||||| ||  ||||||||||| |||||||||    
T  1791468 ttgttgtgcatttcacaatttagtacagagtattgtcaaatagcggctatagc 1791416  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 8936780 - 8936736
Alignment:
Q  169 atttagtacaaagcgttgtcaaatagtggctatagcggcgctata 213  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||    
T  8936780 atttagaacaaagtgttgtcaaataatggctatagcggcgctata 8936736  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 1138468 - 1138433
Alignment:
Q  169 atttagtacaaagcgttgtcaaatagtggctatagc 204  Q
    ||||||||||||| ||||||||||||||||||||||    
T  1138468 atttagtacaaagagttgtcaaatagtggctatagc 1138433  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 38692467 - 38692426
Alignment:
Q  163 tacacaatttagtacaaagcgttgtcaaatagtggctatagc 204  Q
    ||||| ||||||||||||| |||||||||||| |||||||||    
T  38692467 tacacgatttagtacaaagtgttgtcaaatagcggctatagc 38692426  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 6025996 - 6025952
Alignment:
Q  169 atttagtacaaagcgttgtcaaatagtggctatagcggcgctata 213  Q
    ||||||||||||  |||||||||||||||||||||| ||||||||    
T  6025996 atttagtacaaaatgttgtcaaatagtggctatagcagcgctata 6025952  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Original strand, 1118943 - 1118976
Alignment:
Q  169 atttagtacaaagcgttgtcaaatagtggctata 202  Q
    ||||||||||||| ||||||||||||||||||||    
T  1118943 atttagtacaaagtgttgtcaaatagtggctata 1118976  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 219
Target Start/End: Original strand, 2732971 - 2733021
Alignment:
Q  169 atttagtacaaagcgttgtcaaatagtggctatagcggcgctataatacta 219  Q
    ||||||||||||  ||||||||||||  ||||||| |||||||||||||||    
T  2732971 atttagtacaaaatgttgtcaaatagcagctatagaggcgctataatacta 2733021  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 202
Target Start/End: Complemental strand, 2730864 - 2730831
Alignment:
Q  169 atttagtacaaagcgttgtcaaatagtggctata 202  Q
    ||||||||||||| ||||||||||||||||||||    
T  2730864 atttagtacaaagtgttgtcaaatagtggctata 2730831  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 213
Target Start/End: Complemental strand, 26445543 - 26445499
Alignment:
Q  169 atttagtacaaagcgttgtcaaatagtggctatagcggcgctata 213  Q
    ||||||||||||||||||||||||||  | ||||| |||||||||    
T  26445543 atttagtacaaagcgttgtcaaatagcagttatagtggcgctata 26445499  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 34620045 - 34620073
Alignment:
Q  186 gtcaaatagtggctatagcggcgctataa 214  Q
    |||||||||||||||||||||||||||||    
T  34620045 gtcaaatagtggctatagcggcgctataa 34620073  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 47789198 - 47789234
Alignment:
Q  169 atttagtacaaagcgttgtcaaatagtggctatagcg 205  Q
    ||||||||||||  |||||||||||||||||||||||    
T  47789198 atttagtacaaactgttgtcaaatagtggctatagcg 47789234  T

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