View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5537-Insertion-2 (Length: 1009)

Name: NF5537-Insertion-2
Description: NF5537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5537-Insertion-2
NF5537-Insertion-2
[»] chr1 (1 HSPs)
chr1 (7-996)||(42423961-42424963)


Alignment Details
Target: chr1 (Bit Score: 736; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 736; E-Value: 0
Query Start/End: Original strand, 7 - 996
Target Start/End: Original strand, 42423961 - 42424963
Alignment:
Q  7 aagagagtgaaattggaataaataacgcaaagattttgtgttgtgttagaacatagaaatggtttttgtgtttgacctttttggacaaagtctttgtgtc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  42423961 aagagagtgaaattggaataaataacgcaaagattttgtgttgtgttagaacgtagaaatggtttttgtgtttgacctttttggacaaagtctttgtgtc 42424060  T
Q  107 gtgtcttaggtaagagagcatagacgcggtggctgtctctcaataaacatgtagtaattttcattatattttaatgaaagttgattttcatttcatattt 206  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42424061 gtgtcttaggtaagagagcatagacgcggtggctgtctc--aataaacatgtagtaattttcattatattttaatgaaagttgattttcatttcatattt 42424158  T
Q  207 gtgtttcaaactttcaattatttactagttgaatttttatattcnnnnnnntaataattaccagttgagtgaactttgagagttgaatgtacccnnnnnn 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||||| ||||||||| |||||||||||||||||||||||          
T  42424159 gtgtttcaaactttcaattatttactagttgaatttttatattcaaaaaaataataattagcagttgagtcaactttgagagttgaatgtacccaaaaaa 42424258  T
Q  307 nnn-----gactttgagaatggtagtaattttgtatacataagcataggattaattttgagattaccaatttatatgtacccnnnnnnnnn-ccttacaa 400  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||    
T  42424259 aaaaaaaagactttgagaatggtagtaattttgtatacataagcataggattaattttgagattaccaatttatatgtacccaaaaaaaaaaccttacaa 42424358  T
Q  401 atttataatttcttttccttcagagaaaaattataatttctctgnnnnnnnnnn----gagattacgaatttatgagtgctttcgataccgaaacctgaa 496  Q
    ||||||||||||||||||  ||||||||||||||||||||||||              | ||||||||||||||||||||||| ||||||||||||||||    
T  42424359 atttataatttcttttcccacagagaaaaattataatttctctgttttttttttttttgtgattacgaatttatgagtgcttttgataccgaaacctgaa 42424458  T
Q  497 ctcctaaattctaccgcgacgctttatcttttgacaattgaaggttttagggtaagtagttagtcaatttaaaacatagactataattgcattgagtcaa 596  Q
    || ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |||||||||||||||||||||    
T  42424459 cttctaaattctaccgcgaccctttatcttttgacaattgaagattttagggtaagtagtcagtcaattcaaaacataaactataattgcattgagtcaa 42424558  T
Q  597 aaataaagacctcgttttagatcatacaatatgttttaccaatgatgtaaaattcatgttttaagcgaactaaaagtttcaaaccagagggatatctctg 696  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42424559 aaataaagacctcgttttagatcatacaatatgttttaccaatgatgtaaaattcatgttttaagcgaactaaaagtttcaaaccagagggatatctctg 42424658  T
Q  697 attcgtaaagcttcacggccagaatttgtttgttgccataaagtatttgatacatgtttgtaaatcatttttctcaatctcacgtatataaacaaatcag 796  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42424659 attcataaagcttcacggccagaatttgtttgttgccataaagtatttgatacatgtttgtaaatcatttttctcaatctcacgtatataaacaaatcag 42424758  T
Q  797 gtaaatacaaactgagaggatcatgggg-agaaaaaagaatagaacaactttcaaatacttattacaatgattatttatatgttgagtactaaaatattt 895  Q
    |||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42424759 gtaaatacaaactgagaggatcatggggaaaaaaaaagaattgaacaactttcaaatacttattacaatgattatttatatgttgagtactaaaatattt 42424858  T
Q  896 gttatcaccaatcctcttcattagtgataaaaataacctcc-ttgcacgtgatgtcatctc-tcattaacccaatt-aagaaagtgcatc-ttttcgtcg 991  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||| ||||||||||||| |||||||||    
T  42424859 gttatcaccaatcctcttcattagtgataaaaataacctcctttgcacgtaatgtcatctcttcattaacccaattaaagaaagtgcatctttttcgtcg 42424958  T
Q  992 ctgca 996  Q
    |||||    
T  42424959 ctgca 42424963  T

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