View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5537-Insertion-3 (Length: 945)
Name: NF5537-Insertion-3
Description: NF5537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5537-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 678; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 8 - 912
Target Start/End: Complemental strand, 5905736 - 5904845
Alignment:
| Q |
8 |
cgaaggagaaagtaaatacgatgggtggtcggaaacgtaagcaaatggatcatccgagtatatggagtatgaataacagaagactgtagaattattttcc |
107 |
Q |
| |
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|||||||||||||||||| || |||| |||||||||||||||||| |||||||| ||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
5905736 |
cgaaggagaaagtaaataagaagggtagtcggaaacgtaagcaaaaggatcatcttagtat--ggagtatgaatagcagaagactgtagaattattttcc |
5905639 |
T |
|
| Q |
108 |
tcatctttttatcaaatttgtgttataaaaaatgacataca-----tgttgatcat--tatatagtgtcacgctaatgatatttcaagacacaaatagaa |
200 |
Q |
| |
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| T |
5905638 |
taatctttttatcaaatttgtgttataaaaaatgacatacagtacatgttgatcatattatataatgtcacgttaatgatatttcaagacacaaatagaa |
5905539 |
T |
|
| Q |
201 |
gaggtaaaaatgaactttcactatatgaaattcagtattccactcctactttctgcttataagtttccatttaattgtgctttcttcatgctccaagcac |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5905538 |
gaggtaaaaatgaactttcactatatgaaattcagtattccactcctactttctgcttataagtttccatttaattgtgctttcttcatgctccaagcac |
5905439 |
T |
|
| Q |
301 |
tcaatcttgtgatcttcacattagtagttccattattgaaagcataaattagtgctttatcattgatggccaatgtaggataaactcttgatgtgatgca |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5905438 |
tcaatcttgtgatcttcacattagtagttccattattgaaagcataaattagtgctttatcattgatggccaatgtaggataaactcttgatgtgatgca |
5905339 |
T |
|
| Q |
401 |
tgccttcccttctcctccaaaactctctaccacagaatgatcaatctgtgaaaaaggcataaactaatttattagaacgccaaatgaaaaatataatgaa |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
5905338 |
tgccttcccttctcctccaaaactctctaccacagagtgatcaatctgtgaaaaaggcataaactaatttattagaatgccaaatcaaaaatataatgaa |
5905239 |
T |
|
| Q |
501 |
tgcaaacataactaagacctcttattggtgatatatttcctctagtcttaaatataaacaaaaaagtcaatgcataatgcaatgcatgtgttgggcnnnn |
600 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| ||| |
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|
| T |
5905238 |
tgcaaacataactaagacctcttattgatgatatatttcctctagttttaaatataaacaaaaaagt--------------atgcatgtgttaggc-aaa |
5905154 |
T |
|
| Q |
601 |
nnnnngttttctgcatcatactactatctcatttcatgacttcaaaaattgtaagtattgatggaacttttgtggaccactaaaatccatnnnnnnnnng |
700 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5905153 |
aaaaagttttctgcatcatactactatctcatttcatgacttcaaaaattgtaagtattgatggaacttttgtggaccactaaaatccataaaaaaaaag |
5905054 |
T |
|
| Q |
701 |
ttggcacatcttaaatattgtcaaatgccttaaatgctcaatcaattagaacttaccaaacttctcaatgacagcttctcatgaagaacatccacgtcta |
800 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5905053 |
ttggcaca---taaatattgtcaaatgccttaaatgctcaatcaattagaacttaccaaacttctcaatgacagcttctcatgaagaatatccacgtcta |
5904957 |
T |
|
| Q |
801 |
taaaagtcccataagtggtcacatcattatctttattcaaagaagacctgttaattaaagatacatttttataaattagagttggaactcaattttgaat |
900 |
Q |
| |
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| T |
5904956 |
taaaagtcccataagtggtcatatcattatctttattcaaagaagacctgttaattaaagatacatttttataaattagagttggaactcaattttgaat |
5904857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 147; Significance: 5e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 175 - 397
Target Start/End: Original strand, 31909820 - 31910042
Alignment:
| Q |
175 |
aatgatatttcaagacacaaatagaagaggtaaaaatgaactttcactatatgaaattcagtattccactcctactttctgcttataagtttccatttaa |
274 |
Q |
| |
|
||||||||||||| |||| ||||||| || | |||||||||| |||||||| ||||| |||||| | ||||||||||| |||||||||||||||||||| |
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| T |
31909820 |
aatgatatttcaatacaccaatagaaaagctcaaaatgaactatcactatacgaaatctagtatttccctcctactttcggcttataagtttccatttaa |
31909919 |
T |
|
| Q |
275 |
ttgtgctttcttcatgctccaagcactcaatcttgtgatcttcacattagtagttccattattgaaagcataaattagtgctttatcattgatggccaat |
374 |
Q |
| |
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|||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
31909920 |
ttgtgctttctttatgctctaagcactcaatcttgtgatcttgacattagtagttccattattgaaagcataaagtagtgctttatcattgatagccaat |
31910019 |
T |
|
| Q |
375 |
gtaggataaactcttgatgtgat |
397 |
Q |
| |
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|||||||||| ||| |||||||| |
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| T |
31910020 |
gtaggataaattctggatgtgat |
31910042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 278 - 451
Target Start/End: Original strand, 27986335 - 27986508
Alignment:
| Q |
278 |
tgctttcttcatgctccaagcactcaatcttgtgatcttcacattagtagttccattattgaaagcataaattagtgctttatcattgatggccaatgta |
377 |
Q |
| |
|
|||||| ||||||||||||||||| || | ||||||| |||| | |||||||||||||| |||| || |||||||||||||||| ||||| || |
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| T |
27986335 |
tgctttattcatgctccaagcacttaacttcttgatcttaacatcaactgttccattattgaatgcatgaaggtgtgctttatcattgattgccaacgtt |
27986434 |
T |
|
| Q |
378 |
ggataaactcttgatgtgatgcatgccttcccttctcctccaaaactctctaccacagaatgatcaatctgtga |
451 |
Q |
| |
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||||||||||||| |||||||||| || |||| | |||| |||||||| || || || ||||| |||||||| |
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| T |
27986435 |
ggataaactcttgccgtgatgcatgtttttccttttgctccgaaactctccactactgagtgatctatctgtga |
27986508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 31909564 - 31909629
Alignment:
| Q |
100 |
tattttcctcatctttt-tatcaaatttgtgttataaaaaatgacatacatgttgatcattatata |
164 |
Q |
| |
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|||||||||| |||||| |||||||||||| |||||| |||| |||||||| |||||||||||||| |
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| T |
31909564 |
tattttcctcgtcttttttatcaaatttgtattataataaatcacatacatattgatcattatata |
31909629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 278 - 449
Target Start/End: Original strand, 42873323 - 42873494
Alignment:
| Q |
278 |
tgctttcttcatgctccaagcactcaatcttgtgatcttcacattagtagttccattattgaaagcataaattagtgctttatcattgatggccaatgta |
377 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| || || | ||||||||||||||||||| | | || ||||||| ||| || |||||| |
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|
| T |
42873323 |
tgctttcttcatgctccaagcattcaatcttgtgatcttgactgcagaatttccattattgaaagcatataacaaagccttatcatggattgctaatgta |
42873422 |
T |
|
| Q |
378 |
ggataaactcttgatgtgatgcatgccttcccttctcctccaaaactctctaccacagaatgatcaatctgt |
449 |
Q |
| |
|
||||||||||| | ||||||||| ||| | |||||||| ||||||||||| ||||| ||||| ||||||||| |
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| T |
42873423 |
ggataaactctagctgtgatgcaggcccttccttctccaccaaaactctccaccactgaatggtcaatctgt |
42873494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 750 - 849
Target Start/End: Original strand, 42874152 - 42874251
Alignment:
| Q |
750 |
aacttaccaaacttctcaatgacagcttctcatgaagaacatccacgtctataaaagtcccataagtggtcacatcattatctttattcaaagaagacct |
849 |
Q |
| |
|
||||||||||| |||| | ||||||||| |||||||| || || || | |||||||||||| ||||||| |||||| |||||||||||||| ||||| |
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|
| T |
42874152 |
aacttaccaaagttcttagtgacagcttttcatgaagtgggtcaacatccacaaaagtcccatatgtggtcatatcattctctttattcaaagatgacct |
42874251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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