View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5537-Insertion-4 (Length: 925)
Name: NF5537-Insertion-4
Description: NF5537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5537-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 347 - 916
Target Start/End: Complemental strand, 34945840 - 34945271
Alignment:
| Q |
347 |
gcagatatacaatgagcacataaccgatctgttagatccgaataaaagaaacctacaggttaaatccaaaccattttagtcttcccttgtgcatatttga |
446 |
Q |
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| T |
34945840 |
gcagatatacaatgagcacataaccgatctgttagatccgaataaaagaaacctgcaggttaaatccaaaccactttagtcttcccttgtgcatatttga |
34945741 |
T |
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| Q |
447 |
cttgtgtttatactggaattggtttatctgttgtttattcagattagagaagatgttaaatctggaatctacgtcgagaatcttacagaggagcatgtgt |
546 |
Q |
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| T |
34945740 |
cttgtgtttatactggaattggtttatctgttgtttattcagattagagaagatgttaaatctggaatctacgtcgagaatcttacagaggagcatgtgt |
34945641 |
T |
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| Q |
547 |
ttactatgaaggatgtaaatcagcttttgataaaggtgtgctttttatcaaatggattagccattgtcaaactagtcttaaactgctattctgtagcact |
646 |
Q |
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| T |
34945640 |
ttactatgaaggatgtaaatcagcttttgataaaggtgtgctttttatcaaatggattagccattgtcaaactagtcttaaactgctattctgtagcact |
34945541 |
T |
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| Q |
647 |
ttttgttgctctgaaagaacagacaattctcaacgctgaatatttatctggtgcatggttggcaaattaaatgattttgtgttattatgcatctatacta |
746 |
Q |
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| T |
34945540 |
ttttgatcctctgaaagaacagacaattctcaacgctgaatatttatccggtgtatggttggcaaattaaatgattttgtgttattatgcatctatacta |
34945441 |
T |
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| Q |
747 |
aatgcatttacatttaatgtcgttttttcccttgttaaatttcttgaagagtaattatccctaggaattcgtatgaaatgcttattttagcgttgtttca |
846 |
Q |
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| T |
34945440 |
aatgcatttacatttaatgtcgttttttcccttgttaaatttcttgaagagtaattatccctaggaattcgtatgaaatgcttattttagcgttgtttca |
34945341 |
T |
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| Q |
847 |
ataataacgatttgtaatactatgctgatcttgtaagatgtattttgttttcgtaagatgtattttgttt |
916 |
Q |
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| T |
34945340 |
ataataaggatttgtaatactatgctgatcttgtaagatgtattttgttttcgtaagatgtattttgttt |
34945271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 282
Target Start/End: Complemental strand, 34946180 - 34945906
Alignment:
| Q |
8 |
ctcccaatgctttggcggttgaaaattcatcaattgatcaacaaggaggtctcgcccctcgtgtttttgagcgactctttgcacgcataactgaagttag |
107 |
Q |
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| T |
34946180 |
ctcccaatgctttggcggttgaaaattcatcaattgatcaacaaggaggtctcgcccctcgtgtttttgagcgactctttgcacgcataactgaagttag |
34946081 |
T |
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| Q |
108 |
tatcaattttaagttttattccttgttgaatcctttgaccactctacgaaccttgctgttatatcaattaatcgttgtgtctcatgtgtaggagcaaact |
207 |
Q |
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| T |
34946080 |
tatcaattttaagttttattccttgttgaatcctttgaccactctacgaaccttgctgttatatcaattaatagttgtgtctcatgtgtaggagcaaact |
34945981 |
T |
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| Q |
208 |
aagcactccgacaagcaactcaagtatcaatgtcactgttcatttcttgaggttgaattgaattactattgatta |
282 |
Q |
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| T |
34945980 |
aagcactccgacaagcaactcaagtatcaatgtcactgttcatttcttgaggttgaattgaattactattgatta |
34945906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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