View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5537-Insertion-5 (Length: 535)
Name: NF5537-Insertion-5
Description: NF5537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5537-Insertion-5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 8 - 535
Target Start/End: Original strand, 24480334 - 24480862
Alignment:
| Q |
8 |
gacagagagatacaaagaagagaactttgtttctgctcccaaaataattaaattaggttaaaattttgcttctttatattgagccaaatgggcctaaatt |
107 |
Q |
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| T |
24480334 |
gacagagagatacaaagaagagaactttgtttctgctcccaaaataattaaattaggttaaaattttgcttctttatattgagccaaatgggcctaaatt |
24480433 |
T |
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| Q |
108 |
attagaataagcccgtaacaaacaaatcttataaatannnnnnnnnnagccaaatcttataaatatatttaacatctcccctnnnnnnnnnnnnncatct |
207 |
Q |
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| T |
24480434 |
attagaataagcccgtaacaaacaaatcttataaatatattttttttagccaaatcttataaatatatttaacatctcgtc---aaaaaaaaaaacatat |
24480530 |
T |
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| Q |
208 |
tttcatacgtatgataaaaataaagagttagataacaaaaatatttgtttggttccattgaacttgaattgat-cctaagttagaatttctaa--ttcat |
304 |
Q |
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| T |
24480531 |
tttcatgcgtatgataaaa-taaagagttagataacaaaaatatttgtttggttctattgaacttgaattgaaacctaagtcagaatttctaaaattcat |
24480629 |
T |
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| Q |
305 |
ttcgtctttctaatcgaaatcatca--tgtgacttatttgagtcattcactgagagattgagaattcctcttgtatgattatgtttgacgttctgaaacg |
402 |
Q |
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| T |
24480630 |
ttcgtctttctaatcgaaatcattacttgtgatttatttgagtcattcattgagagattgagaattcctcttatatgattatgtttgacgttctgaaacg |
24480729 |
T |
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| Q |
403 |
tacatgcaagtataagaccctactaaccgttacggagcaattcgacatcagagtggtctataaggctttactttgttagacatcatggatataaattttt |
502 |
Q |
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| T |
24480730 |
tacatgcaagtataagaccctactaaccgttacggagcaatacgacatcagagtggtctataaggctttactttgttagacatcatggatataaatcttt |
24480829 |
T |
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| Q |
503 |
gatagtaatttgatctaggatcatgttctaatc |
535 |
Q |
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| T |
24480830 |
gatagtaatttgatctaggatcatgtgctaatc |
24480862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 412
Target Start/End: Original strand, 9497286 - 9497362
Alignment:
| Q |
336 |
ttatttgagtcattcactgagagattgagaattcctcttgtatgattatgtttgacgttctgaaacgtacatgcaag |
412 |
Q |
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| T |
9497286 |
ttatgtgagtcgttcaccgagagattgagaattcttcttgtatgactaggtttaatgttctcaaatgcacatgcaag |
9497362 |
T |
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