View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5537-Insertion-6 (Length: 435)
Name: NF5537-Insertion-6
Description: NF5537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5537-Insertion-6 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 224 - 435
Target Start/End: Original strand, 8627121 - 8627332
Alignment:
| Q |
224 |
ttaccagagaaaagttactaaatcacttgtttaaaagaaatttaaaataatctagaacgaacaaacaaacaaaagggtagcactacaaaaaatattgcag |
323 |
Q |
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| T |
8627121 |
ttaccagagaaaagttactaaatcacttgtttaaaagaaatttaaaataatctagaacgaacaaacaaacaaaagggtagcactacaaaaaatattgcag |
8627220 |
T |
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| Q |
324 |
acagcattccaaaaaattatgatgtgaagaaaccaagggaacataaaggggtaatataatagtaaaatttggtttgatttaaattatatgaaaactccaa |
423 |
Q |
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| T |
8627221 |
acagcattccaaaaaattatgatgtgaagaaaccaagggaacataaaggggtaatataatagtaaaatttggtttgatttaaattatatgaaaactccaa |
8627320 |
T |
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| Q |
424 |
tcaagtaaaagc |
435 |
Q |
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| T |
8627321 |
tcaagtaaaagc |
8627332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 8 - 136
Target Start/End: Original strand, 8626905 - 8627033
Alignment:
| Q |
8 |
aaaatagcataactttgactaaccctcaccctctactgaaggctctagatgagatgtattgtgctcaaaatcaaagttgctaacgaacattaatcttaga |
107 |
Q |
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| T |
8626905 |
aaaatagcataactttgactaaccctcaccctctactgaaggctctagatgagatgtattgtgctcaaaatcaaagttgctaacgaacattaatcttaga |
8627004 |
T |
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| Q |
108 |
tggcatggcaaacaaacaggtagcaatac |
136 |
Q |
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| T |
8627005 |
tggcatggcaaacaaacaggtagcaatac |
8627033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 8624517 - 8624627
Alignment:
| Q |
19 |
actttgactaaccctcaccctctactgaaggctctagatgagatgtattgtgctcaaaatcaaagttgctaacgaacattaatcttagatggcatggcaa |
118 |
Q |
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| T |
8624517 |
actttgaccaactctcaccctctattggaggctctagatgagatgtattgtactcaaaattaaagttgctaacgaacattaatcttagatggcatggcaa |
8624616 |
T |
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| Q |
119 |
acaaacaggta |
129 |
Q |
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| T |
8624617 |
acaaacgggta |
8624627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 243 - 356
Target Start/End: Original strand, 8632395 - 8632508
Alignment:
| Q |
243 |
aaatcacttgtttaaaagaaatttaaaataatctagaacgaacaaacaaacaaaagggtagcactacaaaaaatattgcagacagcattccaaaaaatta |
342 |
Q |
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||||||||||||||||| ||||| |||| ||||| ||||||||| ||||||||| ||| |||||||||||||| ||||||| ||||||||||||||||| |
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| T |
8632395 |
aaatcacttgtttaaaataaattaaaaaaaatcttgaacgaacagacaaacaaaggggaagcactacaaaaaacattgcagctagcattccaaaaaatta |
8632494 |
T |
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| Q |
343 |
tgatgtgaagaaac |
356 |
Q |
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| T |
8632495 |
cgatgtgaagaaac |
8632508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 8632202 - 8632278
Alignment:
| Q |
45 |
gaaggctctagatgagatgtattgtgctcaaaatcaaagttgctaacgaacattaatcttagatggcatggcaaaca |
121 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8632202 |
gaaggctctagatgggatgtgttgtgctcaaaatcaaagttgctaacgaacgttaatcttagatggcatggcaaaca |
8632278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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