View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5537_low_1 (Length: 440)
Name: NF5537_low_1
Description: NF5537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5537_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 7947571 - 7947881
Alignment:
| Q |
13 |
aatattatcaataaccttgtttgtttgcctccaaacatatcatactacatacatttattgttgtaaaaacatatttgaggaaacaacccatttataataa |
112 |
Q |
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| T |
7947571 |
aatattatcaataatcttgtttgtttgcctccaaacatatcatactatatacgtctattgttgtaaaaacatatttgaggaaacaacccatttataataa |
7947670 |
T |
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| Q |
113 |
tttctctnnnnnnnnnncc-atttataatnnnnnnnntagtataatactattagtaatttaaccaattattttgcacagtttcaaaaaatgaaagtacat |
211 |
Q |
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| T |
7947671 |
tttctctaaaaaaaaaacccatttataataaaaaaaaaagtataatactattagtaatttaaccaattattttgcacagtttcaaaaaatgaaagtacat |
7947770 |
T |
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| Q |
212 |
aaatgacacaaacgtagttaacattgtacatttttaaggttatggaatagtgaaattggttaatgacacaacttttttattataaaaattatcctctata |
311 |
Q |
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| T |
7947771 |
aaatgacacaaacgtagttaacattgtacatttttaaggttatggaatagtgaaattggttaatgacacaacttttgtattataaaaattatcctctata |
7947870 |
T |
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| Q |
312 |
ataataatatt |
322 |
Q |
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| T |
7947871 |
ataataatatt |
7947881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 355 - 440
Target Start/End: Original strand, 7947914 - 7947999
Alignment:
| Q |
355 |
gtatcgttcattgtacaaatacgatgaaagtatccaaatgtcgtatttgtgtctataatttttgctgcaatatcatttttgtttca |
440 |
Q |
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| T |
7947914 |
gtatcattcattgtacaaatacgatgaaagtatccaagtgttgtatttgtgtctataatttttgctgcaatatcatttttgtttca |
7947999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 438
Target Start/End: Original strand, 7942121 - 7942176
Alignment:
| Q |
383 |
agtatccaaatgtcgtatttgtgtctataatttttgctgcaatatcatttttgttt |
438 |
Q |
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| T |
7942121 |
agtatccaagtgtcgtatttgtgtctataatatttgttgcaatagcatttttgttt |
7942176 |
T |
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