View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5537_low_2 (Length: 285)
Name: NF5537_low_2
Description: NF5537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5537_low_2 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 14812852 - 14812585
Alignment:
| Q |
18 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
117 |
Q |
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| T |
14812852 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
14812753 |
T |
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| Q |
118 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
217 |
Q |
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| T |
14812752 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
14812653 |
T |
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| Q |
218 |
tcttggatgtcaaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatg |
285 |
Q |
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| T |
14812652 |
tcttggatgtcaaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatg |
14812585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 15259847 - 15259580
Alignment:
| Q |
18 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
117 |
Q |
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| T |
15259847 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
15259748 |
T |
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| Q |
118 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
217 |
Q |
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| T |
15259747 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
15259648 |
T |
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| Q |
218 |
tcttggatgtcaaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatg |
285 |
Q |
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| T |
15259647 |
tcttggatgtcaaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtgatg |
15259580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 17521328 - 17521592
Alignment:
| Q |
18 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
117 |
Q |
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| T |
17521328 |
aggtgaaaagtttgtaaaagatccaaaaaggttaaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaac |
17521427 |
T |
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| Q |
118 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
217 |
Q |
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| T |
17521428 |
ttggcatttaatcatgatgaagaattccatggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgt |
17521527 |
T |
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| Q |
218 |
tcttggatgtcaaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtg |
282 |
Q |
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| T |
17521528 |
tcttggatgtcaaattaaggaaaggtttcgaaggaaatagtgaggaaattattcttgacaaggtg |
17521592 |
T |
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