View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539-Insertion-1 (Length: 1035)
Name: NF5539-Insertion-1
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-136; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-136
Query Start/End: Original strand, 335 - 636
Target Start/End: Original strand, 4860087 - 4860391
Alignment:
| Q |
335 |
cgtcctcgtaataaaaattctcatatatttctgtttttatatcacatcattgataaattttctcttaattttttctttcccatgtctcttgttgtgatat |
434 |
Q |
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| T |
4860087 |
cgtcctcgtaataaaaattctcatatatttctctttttatatcacatcattgataaattttctcttaattttttctttcccatgtctcttgttttgatat |
4860186 |
T |
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| Q |
435 |
aaacctcaccgttgaactattttactctcattttttatattaaaaactcatctcataacacatgaaag-nnnnnnnnnttgtgtgaatttatcctcctta |
533 |
Q |
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| T |
4860187 |
aaacctcaccgttgaactattttactctcattttttatattaaaaactcatctcataacacatgaaagaaaaaaaatattgtgtgaatttatcctcctta |
4860286 |
T |
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| Q |
534 |
attaaaaat--tacagccatacaagatatcaacgcaaatattttccaagaaacaaattaacaatgctatattaaaaccctttacgggattgcttatttgt |
631 |
Q |
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| T |
4860287 |
attaaaatttatacagccatacaagatatcaacgcaaatattttccaagaaacaaattaacaatgctatattaaaaccctttacgggattgcttatttgt |
4860386 |
T |
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| Q |
632 |
gagga |
636 |
Q |
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| T |
4860387 |
gagga |
4860391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 744 - 1035
Target Start/End: Original strand, 4860481 - 4860780
Alignment:
| Q |
744 |
tgttttttcctaaaaagaaattatgcattgtttttatttgtatttcattttcttaacgataatttcatttcaagtgattagttcaataatttatataatt |
843 |
Q |
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| T |
4860481 |
tgttttttcctaaaaagaaattatgcattgtttttatatgtatttcattttcttaacaataatttcatttcaagtgattagttcaataatttatataa-t |
4860579 |
T |
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| Q |
844 |
tgaattatctaaattgatgt-cataagaactgagatttaaactct-aacatctaatttttcacatttaaaatgc----------agaaatagattacttg |
931 |
Q |
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| T |
4860580 |
tgaattatttaaa-taatatacataagaactgagatttaaactctaaatatctaatttttcacatttaaaatacgtaaaatccaacaaatagagtactt- |
4860677 |
T |
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| Q |
932 |
gatcgacacaaaattgatggtcattgaacatagttgatttcttaagatgactaacccaaaatatgt-cagaaaagaaaacacatgttaaggattagagtt |
1030 |
Q |
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| T |
4860678 |
gatcaacataaaattgat-gtcattgaacatagttgatttcttaagatgactaacccaaaatatgtccaagaaagaaaaataatgttaagga-tagagtt |
4860775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 4859824 - 4859918
Alignment:
| Q |
71 |
gtgaaacaacttggtacgttatttctgctctttattaatcttttatctgtgccttctggttttagtaccttatcacaaatgtccccatagaagata |
166 |
Q |
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| T |
4859824 |
gtgagacaacttggtacgttatttctgctctttattaatcttttatttgtaccttctggttttagtaccttatcacaaatgt-cccatagaagata |
4859918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 232 - 277
Target Start/End: Original strand, 4859984 - 4860029
Alignment:
| Q |
232 |
ctcttatgtgtaattgactcatcaaaagataagctgtaatatatcg |
277 |
Q |
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| T |
4859984 |
ctcttatgtgtaattgactcatcaaaagataagctgtaatatatcg |
4860029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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