View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5539-Insertion-2 (Length: 957)

Name: NF5539-Insertion-2
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5539-Insertion-2
NF5539-Insertion-2
[»] chr5 (15 HSPs)
chr5 (7-454)||(6730690-6731137)
chr5 (461-957)||(6731228-6731719)
chr5 (227-579)||(6785676-6786034)
chr5 (227-454)||(6727843-6728070)
chr5 (223-597)||(6760633-6761008)
chr5 (7-223)||(6760352-6760574)
chr5 (741-953)||(6716370-6716582)
chr5 (741-877)||(6773811-6773947)
chr5 (744-824)||(6738915-6738995)
chr5 (744-824)||(6748967-6749047)
chr5 (741-828)||(6724287-6724374)
chr5 (741-892)||(7096876-7097027)
chr5 (632-685)||(6786082-6786135)
chr5 (699-772)||(6761782-6761850)
chr5 (804-910)||(6761852-6761952)
[»] chr8 (1 HSPs)
chr8 (785-827)||(33912557-33912599)


Alignment Details
Target: chr5 (Bit Score: 396; Significance: 0; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 7 - 454
Target Start/End: Original strand, 6730690 - 6731137
Alignment:
Q  7 agtttggtggttccctaaatttcaaacaataattaaatggaacttaactacctatttagagcacatagcaccaacacttcagaatgaataagtgtttgat 106  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6730690 agtttggtggttccctaaatttcaaacaataaataaatggaacttaactacctatttagagcacatagcaccaacacttcagaatgaataagtgtttgat 6730789  T
Q  107 gttacatgtgtctaatggccaattaatactcatatacgaaacattgatacatatagttaaatttaatcaattcaattttctcagattattattagtacct 206  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  6730790 gttatatgtgtctaatggccaattaatactcatatacgagacattgatacatatagttaaatttaatcacttcaattttctcagaatattattagtacct 6730889  T
Q  207 acgtatccgtgttagtctacataatggaaaaatagagtaatttgcattagaagtagatgaaggagaaggtgctcacttgccgaaaagtgtaagcatattg 306  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  6730890 gcgtatccgtgttagtctacataatggaaaaatagagtaatttgcattagaagtagaggaaggagaaggtgctcacttgccgaaaaatgtaagcatattg 6730989  T
Q  307 gaatagaggaatattgaagtaacaacaaatatagtgagccatgagatgagagtgagaaagttaaattgataaacttccatcgacacccatgttgctgttg 406  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  6730990 gaatagaggaatattgaagtaacaacaaatatagtgatccatgagatgagggtgaggaatttaaattgataaacttccatcgacacccatgttgctgttg 6731089  T
Q  407 ccgcaattagaacaatagtaccaagtttcttcctcctccatagtacta 454  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  6731090 ccgcaataagaacaatagtaccaagtttcttcctcctccatagtacta 6731137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 461 - 957
Target Start/End: Original strand, 6731228 - 6731719
Alignment:
Q  461 tcattatgtcattgccactgtcttgcgacacaaaataattacccgatgaatgggagggagttgagaaaggttttgtttctgttgtttctgtagacattgg 560  Q
    |||| |||||||||||||  | ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||         |||||||||    
T  6731228 tcatgatgtcattgccaccattttgcgccacaaaataattacccgatgaatgagagggagttgagaaaggttttgtttctgt---------agacattgg 6731318  T
Q  561 aaatattgtggttaattaagtgaagatgatattgttctaacttctaaggtata----------------tattaaatggaagtaagataagagcattgca 644  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                ||||| ||||||||||||||||||||| |||    
T  6731319 aaatattgtggttaattaagtgaagatgatattgttctaacttctaaggtataggaatagaagactatatattatatggaagtaagataagagcatcgca 6731418  T
Q  645 tggtttcattttggctttaaaatgtgttgtagcaaaatactggtgacatttcagctgaattacaatgcttgagtctcacctgtcaaaaaatataagatct 744  Q
    |||||||||||| ||||||||||||| |||            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6731419 tggtttcatttttgctttaaaatgtgctgt------------gtgacatttcagctgaattacaatgcttaagtctcacctgtcaaaaaatataagatct 6731506  T
Q  745 tataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattttcca 844  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6731507 tataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagattaataatattggatatatactaattttcca 6731606  T
Q  845 aaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtacaatgcacttcaaa 944  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6731607 aaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtacaatgtacttcaaa 6731706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 227 - 579
Target Start/End: Original strand, 6785676 - 6786034
Alignment:
Q  227 ataatggaaaaatagagtaatttgcattagaag---tagatgaaggagaaggtgctcacttgccgaaaagtgtaagcatattggaatagaggaatattga 323  Q
    |||||||||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6785676 ataatggaaaaatagagtaatttgcattagaagaagtagaggaaggagaaggtgctcacttgccgaaaaatgtaagcatattggaatagaggaatattga 6785775  T
Q  324 agtaacaacaaatatagtgagccatgagatgagagtgagaaagttaaattgataaacttccatcgacacccatgttgctgttgccgcaattagaacaata 423  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| | ||| ||||| || ||||||| ||||||||||||||    
T  6785776 agtaacaacaaatatagcgagccatgagatgagagtgaggaagttaaattgacaaacttccaacaacatccatgatgatgttgccacaattagaacaata 6785875  T
Q  424 gtaccaagtttcttcctcctccatagtactatgtcattcattatgtcattgccactgtcttgcgacacaaaataattacccgatgaatgggagggagttg 523  Q
    | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || | ||| ||||||||||    
T  6785876 gcactaagtttcttcctcctccatagtactatgtcattcattatgtcattgccactgtcttgcgacacaaaattattacctgaagtatgagagggagttg 6785975  T
Q  524 agaaaggttttgttt---ctgttgtttctgtagacattggaaatattgtggttaattaa 579  Q
     ||||||||||||||   |||||| ||| ||||||||||||| ||||||| || |||||    
T  6785976 tgaaaggttttgtttctgctgttgcttccgtagacattggaagtattgtgattgattaa 6786034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 227 - 454
Target Start/End: Original strand, 6727843 - 6728070
Alignment:
Q  227 ataatggaaaaatagagtaatttgcattagaagtagatgaaggagaaggtgctcacttgccgaaaagtgtaagcatattggaatagaggaatattgaagt 326  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6727843 ataatggaaaaatagagtaatttgcattagaagtagaggaaggagaaggtgctcacttgccgaaaagtgtaagcatattggaatagaggaatattgaagt 6727942  T
Q  327 aacaacaaatatagtgagccatgagatgagagtgagaaagttaaattgataaacttccatcgacacccatgttgctgttgccgcaattagaacaatagta 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6727943 aacaacaaatatagtgagccatgagatgagagtgagaaagttaaattgataaacttccatcgacacccatgttgttgttgccgcaattagaacaatagta 6728042  T
Q  427 ccaagtttcttcctcctccatagtacta 454  Q
    ||||||||||||||||||||||||||||    
T  6728043 ccaagtttcttcctcctccatagtacta 6728070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 223 - 597
Target Start/End: Original strand, 6760633 - 6761008
Alignment:
Q  223 ctacataatggaaaaatagagtaatttgcattagaag---tagatgaaggagaaggtgctcacttgccgaaaagtgtaagcatattggaatagaggaata 319  Q
    ||||||||| ||||||||||| ||| |||||||||||   |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6760633 ctacataatagaaaaatagagaaatatgcattagaagaagtagaggaaggagaaggtgctcacttgccgaaaagtgtaagcatattggaatagaggaata 6760732  T
Q  320 ttgaagtaacaacaaatatagtgagccatgagatgagagtgagaaagttaaattgataaacttccatcgacacccatgttgctgttgccgcaattagaac 419  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||||| | ||| ||||| || ||||||| ||||||||||    
T  6760733 ttgaagtaacaacaaatatagcgagccatgagatgagagtgaggaagttaaattgacaaacttccaacaacatccatgatgatgttgccacaattagaac 6760832  T
Q  420 aatagtaccaagtttcttcctcctccatag--tacta--tgtcattcattatgtcattgccactgtcttgcgacacaaaataattacccgatgaatggga 515  Q
    |||||||| |||||||||||||||||||||  |||||   ||| ||||  ||| |||||||||  ||||||| |||||||| |||||  || ||||| ||    
T  6760833 aatagtactaagtttcttcctcctccatagtatactacgcgtccttcaacatgccattgccaccatcttgcgccacaaaattattacatgaagaatgaga 6760932  T
Q  516 gggagttgagaaaggttttgtttctgttgtttctgtagacattgga---aatattgtggttaattaagtgaagatgatattgttc 597  Q
    |||||||||||||||||         ||||||||||||||||||||   ||||||||| |||||||||| |||||||||||||||    
T  6760933 gggagttgagaaaggtt---------ttgtttctgtagacattggaaataatattgtgattaattaagtaaagatgatattgttc 6761008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 6760352 - 6760574
Alignment:
Q  7 agtttggtggttccctaaatttcaaacaataattaaatggaacttaactacctatttagagcacatagcaccaacacttcagaatgaataagtgtttgat 106  Q
    |||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  6760352 agtttggtggttccctaaatttcacacaatcaataaatggaacttaactacctattt--agcacatagcaccaacactttagaatgaataagtgtttgat 6760449  T
Q  107 gttaca------------tgtgtctaatggccaattaatactcatatacgaaacattgatacatatagttaaatttaatcaattcaattttctcagatta 194  Q
    ||||||            |||||||||||| |    ||||||||||||||| | |||||||| |||||||| ||||||||| || |||||||||| ||||    
T  6760450 gttacatcaaaactaccgtgtgtctaatgggc----aatactcatatacgagatattgatacctatagttacatttaatcacttaaattttctcaaatta 6760545  T
Q  195 ttattagtacctacgtatccgtgttagtc 223  Q
    |||||||| | ||||||||||||| ||||    
T  6760546 ttattagtgcatacgtatccgtgtcagtc 6760574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 741 - 953
Target Start/End: Original strand, 6716370 - 6716582
Alignment:
Q  741 atcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattt 840  Q
    |||||||||||||||| ||||||| ||||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | | || ||    
T  6716370 atcttataatctggcatttggaatttgaacctctcaacaaggccttctgagccaggccaaacatcatccaagactaataatattggatttctcccaactt 6716469  T
Q  841 tccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaagtccacagcgagcaaacagtgtttgtacaatgcactt 940  Q
     ||  |  |||||||||||   |||||| || ||||||||| ||||||||||||||| || ||| |||||| |  | || || ||||||||||||  |||    
T  6716470 gcctcagcagaagtcccaaccggttaatggcgtcttcatcagtttgaaactcaggcacccgaagcccacagtgttcgaatagcgtttgtacaatgttctt 6716569  T
Q  941 caaattgggagtt 953  Q
    ||| |||||||||    
T  6716570 caagttgggagtt 6716582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 741 - 877
Target Start/End: Original strand, 6773811 - 6773947
Alignment:
Q  741 atcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattt 840  Q
    ||||||||||||||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||    
T  6773811 atcttataatctggcaatttgaatttgaacttctcaacaaggccttctgagccaggccaaacatcatccaagactaataatattggatatctaccaactt 6773910  T
Q  841 tccaaaatagaagtcccaattcgttaattgcatcttc 877  Q
     ||  |  |||| |||||||  |||||||||||||||    
T  6773911 gcctcagcagaattcccaatcggttaattgcatcttc 6773947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 744 - 824
Target Start/End: Original strand, 6738915 - 6738995
Alignment:
Q  744 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatatt 824  Q
    |||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6738915 ttataatctggcaatttgaatgtgaacttctcaacaaggctttctgagccaggccaaacatcatccaagactaataatatt 6738995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 744 - 824
Target Start/End: Original strand, 6748967 - 6749047
Alignment:
Q  744 ttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatatt 824  Q
    ||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6748967 ttataatctggcaattggaatttgaacttctcaacaaggttttctgagccaggccaaacatcatccaagactaataatatt 6749047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 741 - 828
Target Start/End: Original strand, 6724287 - 6724374
Alignment:
Q  741 atcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggat 828  Q
    |||||||||||||||||||  ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6724287 atcttataatctggcaatttaaatttgaacttctccacaaggctttctgagccaggccaaacatcatccaagactaataatattggat 6724374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 741 - 892
Target Start/End: Complemental strand, 7097027 - 7096876
Alignment:
Q  741 atcttataatctggcaattggaatctgaacttatcaacaaggctttctgagccaggccaaacatcatccaagactaataatattggatatatactaattt 840  Q
    ||||||||||||| || ||||||| |||| || |||||||||| |||||||  |||||||||||||||||||||||||| |||||||| | ||| || ||    
T  7097027 atcttataatctgacatttggaatttgaaattctcaacaaggccttctgagttaggccaaacatcatccaagactaatagtattggatttctaccaactt 7096928  T
Q  841 tccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactc 892  Q
     ||  || || |||||||||  ||||||||||||||||||  ||||||||||    
T  7096927 gcctcaacagtagtcccaatcggttaattgcatcttcatcggtttgaaactc 7096876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 632 - 685
Target Start/End: Original strand, 6786082 - 6786135
Alignment:
Q  632 taagagcattgcatggtttcattttggctttaaaatgtgttgtagcaaaatact 685  Q
    ||||||||| |||||||||  |||| ||||||||||||||||||||||||||||    
T  6786082 taagagcatcgcatggtttggtttttgctttaaaatgtgttgtagcaaaatact 6786135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 699 - 772
Target Start/End: Original strand, 6761782 - 6761850
Alignment:
Q  699 ctgaattacaatgcttga-gtctcacctgtcaaaaaatataagatcttataatctggcaattggaatctgaactt 772  Q
    |||||||||||||||| | |||||||||||      ||||||||||||||||||||||||||||||| |||||||    
T  6761782 ctgaattacaatgctttaagtctcacctgt------atataagatcttataatctggcaattggaatttgaactt 6761850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 804 - 910
Target Start/End: Original strand, 6761852 - 6761952
Alignment:
Q  804 tcatccaagactaataatattggatatatactaattttccaaaatagaagtcccaattcgttaattgcatcttcatcactttgaaactcaggcatccaaa 903  Q
    |||||||||| ||||||||||||| ||   | ||||| || ||||||||||||||||  || |||||||||||| |   |||||||||| |||| |||||    
T  6761852 tcatccaagagtaataatattggaaat---ccaatttccctaaatagaagtcccaatatgtcaattgcatcttcgt---tttgaaactccggcacccaaa 6761945  T
Q  904 gtccaca 910  Q
     ||||||    
T  6761946 atccaca 6761952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 785 - 827
Target Start/End: Complemental strand, 33912599 - 33912557
Alignment:
Q  785 ttctgagccaggccaaacatcatccaagactaataatattgga 827  Q
    ||||||||| |||||||||||||||| |||||| |||||||||    
T  33912599 ttctgagccgggccaaacatcatccaggactaacaatattgga 33912557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University