View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5539-Insertion-3 (Length: 840)
Name: NF5539-Insertion-3
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539-Insertion-3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 758; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 7 - 828
Target Start/End: Original strand, 47710184 - 47711000
Alignment:
| Q |
7 |
ataaaagaataagaacgcagctatgttagctttaatatatattgtgtacaaacttcatatacgaatagtggaattgcataataagttatttagagttcat |
106 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47710184 |
ataaaagaataagaacgcagctatgctagctctaatatatattgtgtacaaacttcatatacgaatagtggaattgcataataagttatttagagttcat |
47710283 |
T |
|
| Q |
107 |
gtagaagagggttaatgaaagtgttaaaatttaaaaacattatactagagtaaaatattggtttagttatcagcatcactcaaaatcatttgcaagtgac |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47710284 |
gtagaagagggttaatgaaagtgttaaaatttaaaa-cattatact-gagtaaaatattggtttagttatcagcatcactcaaaatcatttgcaagtgac |
47710381 |
T |
|
| Q |
207 |
ataccttgattatcagggagcaccaactcatagcctggtttcacaatatcagtcacttggattgtgataatgatatctcttctagaattaaaatatcttc |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47710382 |
ataccttgattatcagggagcaccaactcatagcctggtttcacaatatcagtcacttggattgtgataatgatatctcttctagaattaaaatatcttc |
47710481 |
T |
|
| Q |
307 |
agccatcattaccaaaccacttccatccctcttgaacaagcaaggggtctctcattcaccacaagaactatatcagatagagcagctcctggatgttggt |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47710482 |
agccatcattaccaaaccacttccatccctcttgaacaagcaaggggtctctcattcaccacaaaaactatatcagatagagcagctcctggatgttggt |
47710581 |
T |
|
| Q |
407 |
ttccattcccaggaagagtaatttttgtgcctttctctaacaagttttaatgtctatattcaagatttcttctatacacttcaacttcctgtcaagtcaa |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47710582 |
ttccattcccaggaagagtaatttttgtgcctttctctaacaagttttaatgtctatattcaagatttcttctatacacttcaacttcctgtcaagtcaa |
47710681 |
T |
|
| Q |
507 |
aaccaacttagaaaatattgtagtccgaattttgtgttgatataatttccattcgattttgctgagttcaactgtaaaataagcttgataatcaaacaaa |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47710682 |
aaccaacttagaaaatattgtagtccgaattttgtgttgatataatttccattcgattttgctgagttcaactgt-aaataagcttgataatcaaacaaa |
47710780 |
T |
|
| Q |
607 |
gcaatcaagcatatgtcacacaatatttctaaattgcggttcgagactgaaattgcagccataatataaaaggttttagaggtttccacagcagcatttg |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
47710781 |
gcaatcaagcatatgtcacacaatatttctaaattgcggttcgagactgaaactgcagccataatataaaaggttttagaggtttccgcagcagca-ttg |
47710879 |
T |
|
| Q |
707 |
taaccgcaaccgtgcccgtatcgggttgctgtattttgctgcaatatcaaattttgcagcataaccacaaccgcaatttagcaccaaaaagtagtatctt |
806 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47710880 |
taaccgcaaccgtgtccgtatc-ggttgctgtattttgctgcaatatcaaattttgcagcataaccacaaccgcaatttagcaccaaaaagtagtatctt |
47710978 |
T |
|
| Q |
807 |
actgtcattaacatccagaggg |
828 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
47710979 |
actgtcattaacatccagaggg |
47711000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 352 - 501
Target Start/End: Complemental strand, 16559771 - 16559621
Alignment:
| Q |
352 |
ggtctctcattcaccacaagaactatatcagatagagcagctcctggatgttggtttccattcccaggaagagtaatttttgtgcctttc-tctaacaag |
450 |
Q |
| |
|
||||||||||||||||||| || || ||||||| | |||| ||| || |||||| |||| || ||||||| ||| ||||||||||| ||| || ||| || |
|
|
| T |
16559771 |
ggtctctcattcaccacaaaaattacatcagatggtgcagatccgggttgttggcttccttttccaggaaaagtgatttttgtgcccttcttccaaccag |
16559672 |
T |
|
| Q |
451 |
ttttaatgtctatattcaagatttcttctatacacttcaacttcctgtcaa |
501 |
Q |
| |
|
|||||| | ||| ||||||||||||||| || ||||||||||||||||| |
|
|
| T |
16559671 |
gtttaatatgtatcttcaagatttcttcttcactcttcaacttcctgtcaa |
16559621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 456 - 501
Target Start/End: Original strand, 19793477 - 19793522
Alignment:
| Q |
456 |
atgtctatattcaagatttcttctatacacttcaacttcctgtcaa |
501 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||| |||||||||||| |
|
|
| T |
19793477 |
atgtctattttcaagatttcttctatatatttccacttcctgtcaa |
19793522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 169 - 264
Target Start/End: Original strand, 15833561 - 15833653
Alignment:
| Q |
169 |
ttagttatcagcatcactcaaaatcatttgcaagtgacataccttgattatcagggagcaccaactcatagcctggtttcacaatatcagtcactt |
264 |
Q |
| |
|
||||||||||||| |||||||| || |||||||||| |||||||| |||| | || |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
15833561 |
ttagttatcagcaccactcaaagtcctttgcaagtggcataccttcatta---gtgaccaccaactcatagcctggtttcacaatatcagccactt |
15833653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University