View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539-Insertion-4 (Length: 802)
Name: NF5539-Insertion-4
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539-Insertion-4 |
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Alignment Details
Target: chr8 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 21 - 510
Target Start/End: Complemental strand, 42930334 - 42929841
Alignment:
| Q |
21 |
gttgttcagtttccagttgctccggcgttgattgactttgtaatgaataaattgatatgcttcttcttcttctgttgtaaaggaaaggcacgccaagatc |
120 |
Q |
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| T |
42930334 |
gttgttcagtttccacttgctcgggcgttgattgactttgtaatgaataaattgatatgcttcttcttct---gttgtaaaggaaaggcacgccaagatc |
42930238 |
T |
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| Q |
121 |
ttgtttgatcccaataatttcgtgttttaatctttttgttaaagagtgcccgaaatactcattaatatttctcttttttatttatcgaattcatgtattt |
220 |
Q |
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| T |
42930237 |
ttgtttgatcccaataatttcgtgtcttaatctttttgttatagagtgcctgaaatactcattaatatttctcttttttatttatcgaattcatgtattg |
42930138 |
T |
|
| Q |
221 |
gacgcgtttgat---------aaatccttcaaatcatactatcaagccacaaaacaaagcgcacaattatgatgatgataaaaccattttcttgggctcc |
311 |
Q |
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| T |
42930137 |
gactcgtttgataaatttttcaaatccttcaaatcatactatcaagccacaaaacaaagcgaacaattatgatgatgataaaaccattttcttgggctac |
42930038 |
T |
|
| Q |
312 |
caatttttctattcttatctctacttcttaatcattgattactctcttgattgaagnnnnnnnnnnttacgtttttcaatagctttatatcttgaaaaat |
411 |
Q |
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| T |
42930037 |
caatttttctattcttatctctacttcttaatcattgattactctctttattgaa--aaaaaaaaattatgtttttcaatagctttatatcttgaaaaat |
42929940 |
T |
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| Q |
412 |
ttgtgttcaccaactcatgatattataaaataatgatactatctcttatatcatgtgtgcgctaaaatcataaaagaataaatctgtattgtgttactg |
510 |
Q |
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| T |
42929939 |
ttgtgttcaccaactcatgatattataaaataatgatactatctcttatatcatgtgtgcgctaaaatcataaaagaataaatctccattgtgttactg |
42929841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 599 - 801
Target Start/End: Complemental strand, 42929700 - 42929494
Alignment:
| Q |
599 |
cttcatccacaatgcatgagagtgataatatcatcatagcatatacgttactttccaagtcttcaaccgaggaaatgaaattcaatactatgcctactca |
698 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
42929700 |
cttcatccacaatgcatgagagtgataatatcatcatagcatatacgttactttccaagtcttcaaccgaggaaatgaaattcaatactatgcctaccca |
42929601 |
T |
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| Q |
699 |
catt-aacatgtatgactttgtgagacaacagataaa--gaaattcacacttttattttcttt-gccaccggtttccggtcatcggttgaactaattgtc |
794 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42929600 |
cattaaacatgtatgactttgtgagacaacagataaaagaaaattcacacttttattttctttggccaccggtttccggtcatcggttgaactaattgtc |
42929501 |
T |
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| Q |
795 |
taatttt |
801 |
Q |
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||||||| |
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| T |
42929500 |
taatttt |
42929494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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