View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539-Insertion-5 (Length: 780)
Name: NF5539-Insertion-5
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539-Insertion-5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 712; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 712; E-Value: 0
Query Start/End: Original strand, 8 - 780
Target Start/End: Complemental strand, 46874827 - 46874056
Alignment:
| Q |
8 |
tcaaacccatgtacacagtgaaaaagtaaaagctaagtagcttctttcaagacgtgcgtctagtggatatgtgccgcacaaacaaacacaggcttagtct |
107 |
Q |
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| T |
46874827 |
tcaaacccat-tacacagtgaaaaagtaaaagctaagtagcttctttcaagacgtgcgtctcttggatatgtgccgcacaaacaaacacaagcttagtct |
46874729 |
T |
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| Q |
108 |
ttctacattaatatctcttcaattaacatctattgaaatcaacaaaagacatagcataaacttgaatagtctcttgatgcatcaagataaacatagaatc |
207 |
Q |
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| T |
46874728 |
ttctacattaatatctcttcaattaacatctattgaaatcaacaaaagacatagcataaacttgaatagtctcttgatgcatcaagataaacatagaatc |
46874629 |
T |
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| Q |
208 |
ttcaaaattgtggccgtaaatttgaaaaatgactaaattgacttaagttgttcaatttaaggggctaaatacaattcagtccatattttaagtactaaaa |
307 |
Q |
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| T |
46874628 |
ttcaaaattgtggccgtaaatttgaaaaatgactaaattgacttaagttgttcaatttaaggggctaaatacaattcagtccattttttaagtactaaaa |
46874529 |
T |
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| Q |
308 |
tttagtccatatttttggttcagccagctaataagacttgatcaaaagatcagctnnnnnnngtcttaagcaaaagagctataggcactacttcgattat |
407 |
Q |
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| T |
46874528 |
tttagtccatatttttggttcagccagctaataagacttgatcaaaagatcagcaaaaaaaagtcttaagcaaaagagctataggcactacttcgattat |
46874429 |
T |
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| Q |
408 |
aacagtgaataaagagaaaagcattctcaaaagggatgacaaaagaggttcaaaatctattgttgattaagaattgacagataaaatcaaagatataaaa |
507 |
Q |
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| T |
46874428 |
aacagtgaataaagagaaaagcattctcaaaagggatgacaaaagaggttcaaaatctattgttgattaagaattgacagataaaatcaaagatataaaa |
46874329 |
T |
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| Q |
508 |
gaacctttacaagtaaaaaagttggagctcctcacaagaaatgagggctttgcgctgattgagaataatttaactccacaatctactattgacttcaagt |
607 |
Q |
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| T |
46874328 |
gaacctttacaagtaaaaaagttggaactcctcacaagaaatgagggctttgcactgattgagaataatttaactccacaatctactattgacttcaagt |
46874229 |
T |
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| Q |
608 |
tggggtcttagacccatagtttgttgttgtgaaccaattgtattgatgattatcttcaaatgccacaaactgccagaaatctttcttcatcttgctgaca |
707 |
Q |
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| T |
46874228 |
tggggtcttagacccatagtttgttgttgtgaaccaattgtattgatgattatcttcaaatgccacaaactgccagaaatctttcttcatcttgctgaca |
46874129 |
T |
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| Q |
708 |
atccttgaaatcctatacttgataaactccaatgctgtagaaaacaatcctttaccatcaatcatagagctcc |
780 |
Q |
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| T |
46874128 |
atccttgaaatcctatacttgataaactccaatgctgtagaaaacaatcctttacaatcaatcatagagctcc |
46874056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 15504673 - 15504756
Alignment:
| Q |
166 |
aacttgaatagtctcttgatgcatcaagataaacatagaatcttcaaaattgtggccgtaaatttgaaaa-atgactaaattgact |
250 |
Q |
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| T |
15504673 |
aacttaaatagtctcttgttgcatcaagacaaacat--aaactttaaaattgtggtgctaaatttgaaaatatgactaaattgact |
15504756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 244
Target Start/End: Complemental strand, 13054487 - 13054405
Alignment:
| Q |
162 |
cataaacttgaatagtctcttgatgcatcaagataaacatagaatcttcaaaattgtggccgtaaatttgaaaaatgactaaa |
244 |
Q |
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|||| ||||||||||||| || |||||||| |||| ||||||| ||| |||||||||| |||||| ||||||||||||| |
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| T |
13054487 |
catagacttgaatagtcttatgctgcatcaaaataagcatagaacctttaaaattgtgggataaaatttaaaaaatgactaaa |
13054405 |
T |
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