View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539-Insertion-7 (Length: 443)
Name: NF5539-Insertion-7
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539-Insertion-7 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0065 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 7 - 443
Target Start/End: Complemental strand, 20921444 - 20921008
Alignment:
| Q |
7 |
agtatgcccggtctcgtcccaactaaatatttatcctttagtatccacaactgcataacatcttcgtctgtctcaaaatgattacttatttctcagctaa |
106 |
Q |
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| T |
20921444 |
agtatgcccggtctcgtcccaactaaatatttatcctttagtatccacaactgcataacatcttcgtctatctcaaaatgattacttatttctcagctaa |
20921345 |
T |
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| Q |
107 |
tttacttaatcgcccagacatcaaaatcttgtctgtttcgagcgttcgagtccttagttccttacataatctaccttcattgagagcttatatattccct |
206 |
Q |
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| T |
20921344 |
tttacttaatcgcccagacatcaaaatcttgtctgtttcgagcgttcgagtccttagttccttacataatctaccttcattgagagcttatatattccct |
20921245 |
T |
|
| Q |
207 |
caatcatatggtgacttcctcattccaagtttctctttctattatgcaatcttgaatttgcgcataggattgtagctttactctccaccttattcctgct |
306 |
Q |
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| T |
20921244 |
caatcatatggtgacttcctcattccaagtttctctttctattatgcaatcttgaatctgcgcataggattgtagctttactctccaccttattcctgct |
20921145 |
T |
|
| Q |
307 |
tctcaactacggcttccgttaaagctttcaaatcaatccttaaagatttatgagtctcttacttttccataagtgaagtacagttttcccacatgtccaa |
406 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20921144 |
tctcaactacggcttccgttaaagctttaaaatcaatccttaaagatttatgagtctcttacttttccataagtgaagtacagttttcccacatgtccaa |
20921045 |
T |
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| Q |
407 |
caatgttagggtactccttcttaatcttaacattctc |
443 |
Q |
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| T |
20921044 |
caatgttagggtactccttcttaatcttaacattctc |
20921008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 244
Target Start/End: Original strand, 65591 - 65820
Alignment:
| Q |
14 |
ccggtctcgtcccaactaaatatttatcctttagtatccacaactgcataacatcttcgtctgtctcaaaatgattacttatttctcagctaatttactt |
113 |
Q |
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||||||||||||| | || | | |||||||||||||||||||| |||||||||||||||||| | || |||||||| || || ||| |||| ||||||| |
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| T |
65591 |
ccggtctcgtccctagtacacacttatcctttagtatccacaattgcataacatcttcgtctct-tcccaatgattattttttcctcggctactttactt |
65689 |
T |
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| Q |
114 |
aatcgcccagacatcaaaatcttgtctgtttcgagcgttcgagtccttagttccttacataatctaccttcattgagagcttatatattccctcaatcat |
213 |
Q |
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||| ||| |||||||| || |||| ||||||||||| || ||| | |||||| || | ||||||||||||||||||||| ||||| ||||| | |
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| T |
65690 |
aatgatccaatcatcaaaacctcgtctatttcgagcgtttgaaatctttgctccttaattattataccttcattgagagcttatagattccatcaattgt |
65789 |
T |
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| Q |
214 |
atggtgacttcctcattccaagtttctcttt |
244 |
Q |
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||| |||||||||||||||| |||||||||| |
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| T |
65790 |
atgatgacttcctcattccatgtttctcttt |
65820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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