View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539-Insertion-9 (Length: 436)
Name: NF5539-Insertion-9
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539-Insertion-9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 8 - 436
Target Start/End: Original strand, 2685438 - 2685866
Alignment:
| Q |
8 |
taattcccattgtcttgttcacaaaaactgagcttgtctcaggcaacttcacattctccatacgtaaaaatttatcactctcacaatccaaattcttatt |
107 |
Q |
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| T |
2685438 |
taatccccattgtcttgttcacaaaaactgagcttgtctcaggcaacttcacattctccatacgtaaaaatttatcactctcacattccaaattcttatt |
2685537 |
T |
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| Q |
108 |
cctcacacacccatcagacccatctctcaatttccaagcttgttcattcttaggactaaaacctttcacacattgacaaacaggtgaagcatttgtgtca |
207 |
Q |
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| T |
2685538 |
cctcacacacccatcagacccatctctcaatttccaagcttgttcatttttaggactaaaacctttcacacattgacaaacaggtgaaccatttgtgtcg |
2685637 |
T |
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| Q |
208 |
cataaaccataaggaccacattctctgtaactatcacattgatcttttggtgcataccaaaaatttgtccatgttttcatactttgtatccatgttcgac |
307 |
Q |
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| T |
2685638 |
cataaaccataaggaccacattctctgtaactatcacattgatcttttggtgcataccaaaaatttgtccatgttttcatactttgtatccatgttcgac |
2685737 |
T |
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| Q |
308 |
gttgaagttgaccacccgaatccacaactagtctagaaaaaatcgatggatttccgatggtaaacgagtagttaacaccgtgttggtttgatgaaaaatt |
407 |
Q |
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| T |
2685738 |
gttgaagttgaccacccgaatccacaactagtctagaaaaaatcgatggatttccgatggtaaacgagtagttaacaccgtgttggtttgatgaaaaatt |
2685837 |
T |
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| Q |
408 |
gaaaactattgaatctgtatcatgttgca |
436 |
Q |
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| T |
2685838 |
gaaaactattgaatctgtatcatgttgca |
2685866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 40 - 278
Target Start/End: Complemental strand, 36361603 - 36361365
Alignment:
| Q |
40 |
cttgtctcaggcaacttcacattctccatacgtaaaaatttatcactctcacaatccaaattcttattcctcacacacccatcagacccatctctcaatt |
139 |
Q |
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| T |
36361603 |
cttgtctctggtaacttcacattcaccatatgcaaaaacttatcactctcacaatccaactcattattcctcaaacatccatcagatccatctctcaaat |
36361504 |
T |
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| Q |
140 |
tccaagcttgttcattcttaggactaaaacctttcacacattgacaaacaggtgaagcatttgtgtcacataaaccataaggaccacattctctgtaact |
239 |
Q |
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| T |
36361503 |
tccatgcttgatgattctttggtcgaaaccctttaatacaattacaaacaggtgaagcatttgtgtcacacacaccaaatggaccacactctttgtaatt |
36361404 |
T |
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| Q |
240 |
atcacattgatcttttggtgcataccaaaaatttgtcca |
278 |
Q |
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| T |
36361403 |
atcacattggtcttttggtgcataccaaaattttgtcca |
36361365 |
T |
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