View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5539_high_1 (Length: 865)
Name: NF5539_high_1
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 677; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 677; E-Value: 0
Query Start/End: Original strand, 19 - 853
Target Start/End: Original strand, 41086432 - 41087267
Alignment:
| Q |
19 |
gatactattctctgagatgcgtgcagtagagtacatgttctgatttgccagtattgttaacacagttcagtagcagtttgaatgcaaatacttgaagtga |
118 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41086432 |
gatagtattctctgaggtgcttgcagtagagtacatgttctgatttgccagtattgttaacacagttcagtagcagtttgaatgcaaatacttgaagtga |
41086531 |
T |
|
| Q |
119 |
ttggtgtgctggtgaagagtgctcattgtattatgtattatatttaaccagagtttgtatgcttggattatttggtggtttttaagtatgtttactactt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41086532 |
ttggtgtgctggtgaagagtgctcattgtattatgtattatatttaaccagagtttgtatgcttggattatttggtagtttttaagtatgtttactactt |
41086631 |
T |
|
| Q |
219 |
tcaaggagtacaaaggatggtaccatgaaggcaaatttgattggtatccggttattgattggttgnnnnnnngagtatacttgagtgaggtagatattcc |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
41086632 |
tcaaggagtacaaaggatggtaccatgaaggcaaatttgattggtatccggttattgattggttgtttttttgagtatacatgagtgaggtacctattcc |
41086731 |
T |
|
| Q |
319 |
tccgaattcataatggaggtgttgctagtgtattagagttatcctggttccgttttggactattgtaagggtctggtgtaagtggtggaatacttatttg |
418 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||| || || |
|
|
| T |
41086732 |
tctgaattcataatggaggtgttgctagtgtattagagttctcctggttcctttttggactattgtaagggtctggtgtaaatggtggaatactgatgtg |
41086831 |
T |
|
| Q |
419 |
tgtattttatttagttggggtgctagcctgtttttctttatgatagttagtctcattcttagtttcagtatcagcttgagtcttgttaggagtcaggtcc |
518 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41086832 |
tgtattttgtttacttggggtgctagcctgtttttctttatgatagttagtctcattcttagtttcagtatcagcttgagtcttgttaggagtcaggtcc |
41086931 |
T |
|
| Q |
519 |
agtagttggtattctggatttctggtggtgtgtgcttagttttgacattttgagatctattgtaattttattgtgttgtccgattgtccaacacatgata |
618 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41086932 |
ggtggttggtattctggatttctggtggtgtgtgcttagttttgacattttgagatctattgtaattttattgtgttgtccgattgtccaacacatgata |
41087031 |
T |
|
| Q |
619 |
gtgtaggtcctctgcaaccttcatagaaggtgggtagagtatgactgcgttaatgctgctgcatcaaacacttctattaataaaatttctctaattatca |
718 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41087032 |
gtgtaggtcctctgcaaccttcatagaaggtgggtagagtatgactgcgttaatgctgctgcatcaaacacttctattaataaaatttctctaattatca |
41087131 |
T |
|
| Q |
719 |
gaaagagnnnnnnnnnnnnnngagtgaacacgaaaagttaatttgcgatcaggtacttaattttgttgacaaataaaatcttacaaatgcctagcaaatg |
818 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41087132 |
gaaagaaaaaaagaaaaaaaagagtgaacacgaaaagttaacttgcgatcgggtacttaattttgttgacaaataaaatcttaccaatgcctagcaaatg |
41087231 |
T |
|
| Q |
819 |
atgatttat-aaattgtggttttattttatcagtat |
853 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
41087232 |
atgatttatgaaattttggttttattttatcagtat |
41087267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 19 - 635
Target Start/End: Original strand, 41074939 - 41075568
Alignment:
| Q |
19 |
gatactattctctgagatgcgtgcagtagagtacatgttctgatttgccagtattgttaacacagttcagtagcagtttgaatgcaaatacttgaagtga |
118 |
Q |
| |
|
|||| ||||||||||| ||| |||||||| |||||| |||||||||||||||| |||| |||||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
41074939 |
gatagtattctctgaggtgcttgcagtagggtacatattctgatttgccagtagtgttgacacagtttagtagtagtttgaatgcaaatacttggagtga |
41075038 |
T |
|
| Q |
119 |
ttggtgtgctggtgaagagtgctcattgtattatgtattatatttaaccagagtttgtatgcttggattatttggtggtttttaagtatgt-----ttac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
41075039 |
ttggtgtgctggtgaagagtgctcattgtagtatgaattatatttaacgagagcttgtatgcttggattatttggtgatttttaagtatgtctgtgttac |
41075138 |
T |
|
| Q |
214 |
tactttcaaggagta-caaaggat---ggtaccatgaaggcaaatttgattggtatccggttattgattggttgnnnnnnngagtatacttgagtgaggt |
309 |
Q |
| |
|
||||||||||||||| |||||| | |||||||| ||||||||||||||||||||||||||||||| |||||| |||||||| |||||||||| |
|
|
| T |
41075139 |
tactttcaaggagtaacaaaggttattggtaccataaaggcaaatttgattggtatccggttattgagtggttgttttttggagtatacatgagtgaggt |
41075238 |
T |
|
| Q |
310 |
agatattcctccgaattcataatggaggtgttgctagtgtattagagttatcctggttccgttttggactattgtaagggtctggtgtaagtggtg---- |
405 |
Q |
| |
|
| ||||||| ||||||| ||||||||| ||||||||||| |||||| ||||| |||| ||||||||||| |||| ||||||| ||||||||| |
|
|
| T |
41075239 |
acctattcctttgaattcacgatggaggtgatgctagtgtatcagagttctcctgattcc-ttttggactatcttaagtgtctggtctaagtggtgaaag |
41075337 |
T |
|
| Q |
406 |
gaatacttatttgtgtattttatttagttggggtgctagcctgtttttctttatgatagttagtctcattcttagtttcagtatcagcttgagtcttgtt |
505 |
Q |
| |
|
|||||||||| |||||||||| ||||| ||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41075338 |
gaatacttatgtgtgtattttgtttagatggggtgttagcctgtgtttctttacgatagttagtctcattcttagtttcagtatcagcttgagtcttgtt |
41075437 |
T |
|
| Q |
506 |
aggagtcaggtccagtagttggtattctggatttctggtggtgtgtgcttagttttgacattttgagatctattgtaattttattgtgt---tgtccgat |
602 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| | |||| ||| | |||||| |
|
|
| T |
41075438 |
aggagttaggtccaatagttggtattctggatttctggtggtgtgtgcttagttttgacatt--gagatctgctgtaactgtattttgtgattatccgat |
41075535 |
T |
|
| Q |
603 |
tgtccaacacatgatagtgtaggtcctctgcaa |
635 |
Q |
| |
|
|||| |||||||||||| ||||||| ||||||| |
|
|
| T |
41075536 |
tgtctaacacatgatagagtaggtcgtctgcaa |
41075568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 181 - 426
Target Start/End: Original strand, 48297170 - 48297421
Alignment:
| Q |
181 |
ttggattatttggtggtttttaagtatgttta-----ctactttcaaggagta-caaaggatggtaccatgaaggcaaatttgattggtatccggttatt |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||| | |||| ||||||||||||||||| ||||| |
|
|
| T |
48297170 |
ttggattatttggtggtttttaagtatgtttatgtttctactttcaaggagcaacaaaggttggtatccgaaaggaaaatttgattggtatcctattatt |
48297269 |
T |
|
| Q |
275 |
gattggttgnnnnnnngagtatacttgagtgaggtagatattcctccgaattcataatggaggtgttgctagtgtattagagttatcctggttccgtttt |
374 |
Q |
| |
|
|||||| || |||||||| ||| ||||||| ||||||| |||||||| ||||||||| |||||||||||||||||| |||| ||||| | | |
|
|
| T |
48297270 |
gattggctgttttttggagtatacatgattgaggtacctattcctatgaattcatgatggaggtgatgctagtgtattagagttctcctagttccttcct |
48297369 |
T |
|
| Q |
375 |
ggactattgtaagggtctggtgtaagtggtggaatacttatttgtgtatttt |
426 |
Q |
| |
|
|||| || |||||||||| ||||||| |||||||||||||| |||||||||| |
|
|
| T |
48297370 |
ggaccatcgtaagggtctagtgtaagcggtggaatacttatgtgtgtatttt |
48297421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 795 - 852
Target Start/End: Complemental strand, 50191146 - 50191088
Alignment:
| Q |
795 |
aatcttacaaatgcctagcaaatgatgatttat-aaattgtggttttattttatcagta |
852 |
Q |
| |
|
||||||||||||||| |||||||| |||||| | |||||||| |||||||||||||||| |
|
|
| T |
50191146 |
aatcttacaaatgcccagcaaatggtgatttgtgaaattgtgattttattttatcagta |
50191088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University