View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_high_10 (Length: 424)
Name: NF5539_high_10
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 7557880 - 7558277
Alignment:
| Q |
10 |
catcatcaactctcattatcttagacatatcactaatgctatccattcttctcattccttcaaaaataggtttctttaaatagccccaaccattttcatt |
109 |
Q |
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| T |
7557880 |
catcatcaactctcattatcttagacatatcactaatgctatccattcttctcattccttcaaaaataggtttctttaaatagccccaaccattttcatt |
7557979 |
T |
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| Q |
110 |
tgtaacttagttggtttaacacataccttcctcaattgccttgagtattcaagtccaaggtattactcgactcttcgtccaaacctaatcgattaaaatc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7557980 |
tgtaacttagttggtttaacacataccttcctcaattgccttgagtattcaagtccaaggttttactcgactcttcgtccaaacctaatcgattaaaatc |
7558079 |
T |
|
| Q |
210 |
atttgcttaaaggttaaccttcttagggtcactaatcaaacctcaacctattccttccaactgtttcaaaagttcacactctttcggtgttcaacagccc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7558080 |
atttgcttaaaggttaaccttcttagggtcactaatcaaacctcaacctattccttccaactgtttcaaaagttcacactctttcggtgttcaacagccc |
7558179 |
T |
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| Q |
310 |
ttaacaacccactaaagcttacactattccaatatatgaaattctcgtaatccatgcttccaatcattaattaacaactgcatctttctcgccactct |
407 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
7558180 |
ttaacaaccaactaaagcttacactattccaatatatgaaattctcgtaatccatgcttccaatcattacttaacaactgcatctttctcgccactct |
7558277 |
T |
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