View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_high_24 (Length: 322)
Name: NF5539_high_24
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 8262378 - 8262672
Alignment:
| Q |
9 |
agaagaaggtggcatgttttttgctagagtaactatgatgtcctgtgagattcttaaaatttaatgtatgagagaagggagggaccaataaagagacaga |
108 |
Q |
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| T |
8262378 |
agaagaaggtggcatgttttttgctagagtaactatgatgtcctgtgagattcttaaaatttaatgtatgagagaagggagggaccaataaagagacaga |
8262477 |
T |
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| Q |
109 |
gaagcagagtcttaaatatagtgacatttaattttttcaacaacccaacaacaaataggaaatgggcacattaaattttgaagatttgaaacaataagag |
208 |
Q |
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| T |
8262478 |
gaagcagagtcttaaatatagtgacatttaattttttcaacaacccaacaacaaataggaaatgggcacattaaatttttaagatttgaaacaataagag |
8262577 |
T |
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| Q |
209 |
nnnnnnngcataatttttgaattgtattatcatagaaacagagatggtcagtgagacaagatgttgagtttagctttgaacatgttcctatattt |
303 |
Q |
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| T |
8262578 |
aaaaaaagcataatttttgaattgtattatcatagaaacagagatggtcagtgagacaagatgttgagtttagctttgaacatgttcctatattt |
8262672 |
T |
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