View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5539_high_26 (Length: 311)

Name: NF5539_high_26
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5539_high_26
NF5539_high_26
[»] chr7 (1 HSPs)
chr7 (1-297)||(48861822-48862109)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 48861822 - 48862109
Alignment:
Q  1 aacaacaagattatgaaacgttctggtagctcttctagcctctcacatcatggcaagtcccctacctgggtaagcttcaacccttttttcattcaaggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48861822 aacaacaagattatgaaacgttctggtagctcttctagcctctcacatcatggcaagtcccctacctgggtaagcttcaacccttttttcattcaaggtt 48861921  T
Q  101 tcaactttctactagtgtttttgtgtttgtctccaaagttgtgacttttgtctcatggaattgcatatgttatannnnnnnnnnnnnnnnnnnaaattca 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||                   |||||||    
T  48861922 tcaactttctactagtttttttgtgtttgtctccaaagttgtgacttttgtctcatggaattgcatatgttata---------attattattaaaattca 48862012  T
Q  201 aatggtctattaattttgcatttgcagacaactatccgtaaggggatgaagcaggtggttacacttccatggaggagcaaaaagttgaagaagaaag 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  48862013 aatggtctattaattttgcatttgcagacaactatccgtaaggggatgaagcaggtggttacactaccatggaggagcaaaaagttgaagaagaaag 48862109  T

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