View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_high_28 (Length: 286)
Name: NF5539_high_28
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 50663388 - 50663642
Alignment:
| Q |
20 |
ataatgacattatttatttcaaacatacactgtatactagaacaatgacataataaggatgaacattaacttttgtgcaatcaacttatacagaattgta |
119 |
Q |
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| T |
50663388 |
ataatgacattatttatttcaaacatacactgtatactagaacaatgacataataaggataaacattaacttttgtgcaatcaacttatacagaattgta |
50663487 |
T |
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| Q |
120 |
aaagtttctcaacctaccaccttcgagtgtttgtttagggagatcatagatttttcaaatgttcaagcaactccttttatttttccctattatccaattt |
219 |
Q |
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| T |
50663488 |
aaagtttctcaacctaccaccttcgagtgtttgttcagggagatcatagatttttcaaatgttcaagcaactccttttgtttttccctattatccacttt |
50663587 |
T |
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| Q |
220 |
cggataacatagatataataa--tcactctctactgcaaatctttgaagtataat |
272 |
Q |
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| T |
50663588 |
cggataacatagatataataatctcactctctactgcaaatctttgaagtataat |
50663642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 50653860 - 50653901
Alignment:
| Q |
30 |
tatttatttcaaacatacactgtatactagaacaatgacata |
71 |
Q |
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| T |
50653860 |
tatttatttcaaacacacaatgtatactagaacaatgacata |
50653901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 151
Target Start/End: Original strand, 50654001 - 50654052
Alignment:
| Q |
100 |
tcaacttatacagaattgtaaaagtttctcaacctaccaccttcgagtgttt |
151 |
Q |
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| T |
50654001 |
tcaacttctacggaattgtaaaactttctcaacctaccaccttaaagtgttt |
50654052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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