View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5539_high_29 (Length: 279)

Name: NF5539_high_29
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5539_high_29
NF5539_high_29
[»] chr8 (11 HSPs)
chr8 (15-279)||(6870592-6870856)
chr8 (26-197)||(8227218-8227389)
chr8 (13-197)||(9762889-9763072)
chr8 (25-193)||(11481406-11481574)
chr8 (26-198)||(13355787-13355959)
chr8 (28-175)||(7968407-7968554)
chr8 (65-197)||(36582901-36583033)
chr8 (13-195)||(31005992-31006176)
chr8 (26-123)||(7987177-7987273)
chr8 (62-121)||(7987283-7987342)
chr8 (196-272)||(8227514-8227590)
[»] chr3 (20 HSPs)
chr3 (26-197)||(5295193-5295364)
chr3 (28-187)||(3778883-3779042)
chr3 (13-193)||(13825897-13826076)
chr3 (21-197)||(21288082-21288257)
chr3 (26-197)||(25874678-25874849)
chr3 (95-198)||(48251708-48251811)
chr3 (26-197)||(27926606-27926766)
chr3 (26-107)||(48251487-48251568)
chr3 (13-122)||(32836738-32836847)
chr3 (26-123)||(32847584-32847681)
chr3 (55-143)||(13084707-13084791)
chr3 (103-198)||(26187906-26188001)
chr3 (102-170)||(36584410-36584478)
chr3 (82-171)||(12149029-12149118)
chr3 (13-87)||(36584468-36584542)
chr3 (13-108)||(9176773-9176868)
chr3 (52-119)||(37341603-37341670)
chr3 (214-272)||(5294986-5295044)
chr3 (214-272)||(12148798-12148856)
chr3 (149-186)||(32836378-32836415)
[»] chr6 (12 HSPs)
chr6 (21-197)||(8576735-8576911)
chr6 (26-197)||(10788461-10788632)
chr6 (13-198)||(35167247-35167432)
chr6 (13-197)||(7622349-7622526)
chr6 (13-198)||(28582125-28582309)
chr6 (86-182)||(642094-642190)
chr6 (34-198)||(10408945-10409108)
chr6 (99-175)||(7245529-7245605)
chr6 (25-173)||(34433171-34433319)
chr6 (13-123)||(17930213-17930323)
chr6 (17-74)||(642002-642059)
chr6 (196-272)||(28581914-28581990)
[»] chr5 (17 HSPs)
chr5 (13-197)||(3926179-3926362)
chr5 (26-197)||(39207091-39207262)
chr5 (13-197)||(35188555-35188738)
chr5 (13-197)||(23429219-23429402)
chr5 (13-198)||(2209518-2209699)
chr5 (82-175)||(42878924-42879017)
chr5 (97-198)||(26621358-26621459)
chr5 (104-197)||(33742765-33742860)
chr5 (62-175)||(39800427-39800540)
chr5 (145-197)||(42836965-42837017)
chr5 (26-89)||(42837602-42837665)
chr5 (13-74)||(26621460-26621520)
chr5 (82-123)||(39886822-39886863)
chr5 (214-272)||(39207402-39207460)
chr5 (214-279)||(23428993-23429058)
chr5 (82-143)||(40057000-40057061)
chr5 (212-272)||(40056749-40056809)
[»] chr2 (10 HSPs)
chr2 (13-197)||(5110193-5110376)
chr2 (21-197)||(5704588-5704764)
chr2 (13-197)||(5938713-5938896)
chr2 (29-197)||(31575918-31576086)
chr2 (13-197)||(13807530-13807713)
chr2 (39-197)||(45151225-45151383)
chr2 (13-155)||(13626275-13626417)
chr2 (62-175)||(42625039-42625152)
chr2 (82-169)||(45458420-45458507)
chr2 (212-272)||(5938501-5938561)
[»] chr7 (23 HSPs)
chr7 (13-198)||(31457240-31457433)
chr7 (13-199)||(36298758-36298944)
chr7 (13-197)||(23809637-23809820)
chr7 (26-197)||(5972946-5973117)
chr7 (42-197)||(38440431-38440586)
chr7 (13-198)||(2944036-2944221)
chr7 (26-175)||(28636374-28636523)
chr7 (26-197)||(11039160-11039332)
chr7 (31-198)||(30541465-30541632)
chr7 (13-194)||(22519160-22519340)
chr7 (28-197)||(33189377-33189542)
chr7 (28-195)||(7767051-7767218)
chr7 (55-190)||(1053121-1053256)
chr7 (86-198)||(15954668-15954780)
chr7 (26-193)||(25502130-25502287)
chr7 (127-198)||(40910567-40910638)
chr7 (13-94)||(15954049-15954130)
chr7 (15-130)||(14753968-14754083)
chr7 (62-175)||(27336933-27337046)
chr7 (105-175)||(47924981-47925054)
chr7 (213-279)||(11039490-11039556)
chr7 (105-196)||(31758949-31759041)
chr7 (212-279)||(38440743-38440810)
[»] chr1 (20 HSPs)
chr1 (26-197)||(17562755-17562926)
chr1 (26-197)||(31585202-31585373)
chr1 (13-197)||(29678276-29678460)
chr1 (13-197)||(36728710-36728893)
chr1 (26-197)||(47140771-47140943)
chr1 (31-198)||(19884384-19884551)
chr1 (13-189)||(48379048-48379222)
chr1 (62-193)||(11894279-11894410)
chr1 (57-197)||(31292760-31292897)
chr1 (102-198)||(38264378-38264474)
chr1 (102-197)||(25987373-25987468)
chr1 (102-196)||(2191841-2191935)
chr1 (13-87)||(2191775-2191851)
chr1 (13-92)||(38264314-38264393)
chr1 (11-87)||(25987458-25987533)
chr1 (159-198)||(15378871-15378910)
chr1 (210-272)||(19884706-19884768)
chr1 (214-272)||(25294228-25294286)
chr1 (214-279)||(47140547-47140612)
chr1 (102-151)||(52252710-52252759)
[»] chr4 (18 HSPs)
chr4 (13-195)||(42555300-42555482)
chr4 (13-198)||(40714812-40714997)
chr4 (13-198)||(51357154-51357338)
chr4 (26-198)||(8819285-8819457)
chr4 (13-197)||(38951607-38951790)
chr4 (13-198)||(23626827-23627009)
chr4 (26-198)||(36464804-36464969)
chr4 (13-189)||(41039328-41039502)
chr4 (28-197)||(43624399-43624570)
chr4 (60-198)||(29117006-29117144)
chr4 (26-195)||(22278301-22278470)
chr4 (102-198)||(17120332-17120428)
chr4 (30-197)||(19841727-19841882)
chr4 (26-87)||(17120281-17120342)
chr4 (82-171)||(40571936-40572026)
chr4 (56-114)||(26330339-26330397)
chr4 (214-272)||(41039099-41039157)
chr4 (196-272)||(8819587-8819663)
[»] scaffold0155 (1 HSPs)
scaffold0155 (29-197)||(6865-7033)
[»] scaffold0041 (1 HSPs)
scaffold0041 (127-198)||(62456-62527)
[»] scaffold0057 (2 HSPs)
scaffold0057 (13-87)||(66611-66685)
scaffold0057 (102-143)||(66580-66621)
[»] scaffold0115 (2 HSPs)
scaffold0115 (62-175)||(22055-22168)
scaffold0115 (214-272)||(21830-21888)
[»] scaffold0691 (1 HSPs)
scaffold0691 (214-272)||(7683-7741)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 15 - 279
Target Start/End: Original strand, 6870592 - 6870856
Alignment:
Q  15 aagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttat 114  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6870592 aagcaagaagttttgtttttgttgaatatgatgagctttatttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttat 6870691  T
Q  115 gtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgatatgcatagagaatgaa 214  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  6870692 atttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgtttcgctaataagaaacgaaaatgcatgtgatatgcatagagaatgaa 6870791  T
Q  215 tttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatatttattta 279  Q
    ||||||||||||||||||||| |||||||||||| ||||||||| |||||||| |||| ||||||    
T  6870792 tttcatatttatccaacatagcagacacggatattacattatccgcatccatggatatatattta 6870856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 8227218 - 8227389
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    ||||||| |||||||||||||||| |||  ||||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||     
T  8227218 tttgtttatgttgaatatgatgagttttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagggactttatttatgtttttgttta 8227317  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||  ||||| |||||||| |||||    
T  8227318 gtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaagtagaaaagaaaatgcgtgtga 8227389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 9762889 - 9763072
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| ||||||||||| ||||||||||||||| ||||  ||||| ||||||||||| ||| ||| ||||||||||||||||||||| |||||||||    
T  9762889 tgaagcaa-aagttttgtttatgttgaatatgatgaactttacttatgtttttgttaaattaaagaactttatttttattaaatgtaagggactttattt 9762987  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  9762988 atgtttttgttgagtcaatgatttttgttgttattgtaatgtatgaatattatgttttgctaaaaataaaagaaaatgcatgtga 9763072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 25 - 193
Target Start/End: Complemental strand, 11481574 - 11481406
Alignment:
Q  25 ttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgttt 124  Q
    |||||||| ||||||||||||||||||||  ||||| ||||||||||||||| ||| ||||||||||||||||||||| | ||||||||||||||||||     
T  11481574 ttttgtttatgttgaatatgatgagctttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagggagtttatttatgtttttgttg 11481475  T
Q  125 ggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcat 193  Q
     ||||||||| |||| | | |||||||||| |||||||||||||||||||| |||||| ||||||||||    
T  11481474 agtcaatgatttttgctattattgtaatgtgtgaatattatgttttgctaaaaagaaaagaaaatgcat 11481406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 13355959 - 13355787
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    ||||||||||||||||| |||||| |||  ||| ||||||||||||||||| ||| |||||||||||||||||| |  ||||||||||||||||||||      
T  13355959 tttgtttttgttgaataggatgagttttacttaagcttttgttaaatcaaataactttatttttattaaatgtatgagactttatttatgtttttgttaa 13355860  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    ||||||||||||||||||  || ||||||||| ||||||||||||||||| |||||| |||||||||| ||||    
T  13355859 gtcaatgatctttgttgttgttctaatgtatggatattatgttttgctaaaaagaaaagaaaatgcatatgat 13355787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 28 - 175
Target Start/End: Original strand, 7968407 - 7968554
Alignment:
Q  28 tgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggt 127  Q
    ||||||||||||||| ||||| ||||   |||||||||||||||| ||| ||| ||||||||||||||||||||  ||||||||||||||||||||| |     
T  7968407 tgtttttgttgaataagatgaactttacctatgcttttgttaaatgaaagaactttatttttattaaatgtaagagactttatttatgtttttgtttagc 7968506  T
Q  128 caatgatctttgttgtaattgtaatgtatgaatattatgttttgctaa 175  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  7968507 caatgatctttgttgttattgtaatgtatggatattatgttttgctaa 7968554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 65 - 197
Target Start/End: Original strand, 36582901 - 36583033
Alignment:
Q  65 tgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatatta 164  Q
    |||||||||||| ||| ||||||||| ||||||||||  |||||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||    
T  36582901 tgttaaatcaaagaactttatttttaataaatgtaagacactttatttatgtttttgtggagtcaatgatctttgttgttattgtaatgtatgaatatta 36583000  T
Q  165 tgttttgctaataagaaacgaaaatgcatgtga 197  Q
    ||||||||||| |||||| ||||||||||||||    
T  36583001 tgttttgctaaaaagaaaagaaaatgcatgtga 36583033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 31006176 - 31005992
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||||||  ||||||||||||||||||||| | |||| ||||||||||| | |||||||| ||| ||||||||| |||| | ||||||||||| ||    
T  31006176 tgaagcaagaaactttgtttttgttgaatatgataatctttatttatgcttttatcaaatcaaataactttatttttagtaaacggaaggaactttactt 31006077  T
Q  113 atgtttttgtttggtcaatgat--ctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgt 195  Q
    || ||||||||  |||||||||   ||| |||| || ||||||| |||||||||||||||||||| |||||  ||||||||||||    
T  31006076 atatttttgttgagtcaatgattatttttttgttatcgtaatgtgtgaatattatgttttgctaaaaagaatagaaaatgcatgt 31005992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 26 - 123
Target Start/End: Original strand, 7987177 - 7987273
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtt 123  Q
    ||||||||||||||||| ||||| ||||    ||||||||||||||| ||| ||| ||||||||||| ||||||||  ||||||||||||||||||||    
T  7987177 tttgtttttgttgaataagatgaactttacccatgcttttgttaaatgaaagaactttatttttatt-aatgtaagagactttatttatgtttttgtt 7987273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 7987283 - 7987342
Alignment:
Q  62 ttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttg 121  Q
    ||||||||||| ||| ||| ||||||||||||||||||||  ||||||||||||||||||    
T  7987283 ttttgttaaatgaaagaactttatttttattaaatgtaagagactttatttatgtttttg 7987342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 8227514 - 8227590
Alignment:
Q  196 gatatgcatagagaatgaatttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatat 272  Q
    |||||| |||||| | | |||||||||||||| |||  ||  ||||||||||||||| |||||||||||||| ||||    
T  8227514 gatatggatagagtacggatttcatatttatctaacggagcggacacggatatcacactatccacatccatggatat 8227590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 5295364 - 5295193
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||      
T  5295364 tttgtttttgttgaatatgatgagctttagttatgtttttgttaaatcaaataactttattttaattaaatgtaagggactttatttatgtttttgttga 5295265  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||    
T  5295264 gtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgtatgtga 5295193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 28 - 187
Target Start/End: Original strand, 3778883 - 3779042
Alignment:
Q  28 tgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggt 127  Q
    ||||||||||||||||||||||||||  |||||||||| |||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||  ||    
T  3778883 tgtttttgttgaatatgatgagctttacttatgctttttttaaatcaaataactttatttttattaaatataagggactttatttatgtttttgttgagt 3778982  T
Q  128 caatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaa 187  Q
    |||||||||||||| | |||||| |||||||||||||||||||||||| |||||| ||||    
T  3778983 caatgatctttgttattattgtagtgtatgaatattatgttttgctaaaaagaaaagaaa 3779042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 13826076 - 13825897
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||||| | ||||||||||||||||||||||| ||||  ||||||||||||||||| ||| ||| ||||||||||| ||||||||  || ||||||    
T  13826076 tgaagcaaga-gctttgtttttgttgaatatgatgaactttacttatgcttttgttaaattaaagaactttatttttatttaatgtaagtgacattattt 13825978  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcat 193  Q
    || ||||||||  |||| ||||||||||||| |||||||||||||||||||||||||| |||| || ||| ||||||||||    
T  13825977 atatttttgttaagtcagtgatctttgttgttattgtaatgtatgaatattatgttttactaaaaataaaagaaaatgcat 13825897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 21288257 - 21288082
Alignment:
Q  21 gaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgttttt 120  Q
    |||| |||||||||||||||||||||||  |||  ||||| ||||||||||||||| ||| ||||||| ||||||||||||  |||||||||||||||||    
T  21288257 gaagctttgtttttgttgaatatgatgat-tttacttatgattttgttaaatcaaagaactttattttaattaaatgtaagagactttatttatgttttt 21288159  T
Q  121 gtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||  ||||||||||||| |||| | ||||||||||||||||||||||| |||||  ||||| ||||||||||||||    
T  21288158 gttgagtcaatgatctttattgttagtgtaatgtatgaatattatgtttcgctaaagagaaaagaaaatgcatgtga 21288082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 25874678 - 25874849
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    ||||||||| |||||||||||||| |||  ||||| ||||||||||||||| ||| ||||||||||||||||||||  || |||||||||||||| ||      
T  25874678 tttgttttt-ttgaatatgatgagttttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagtgacattatttatgtttttattga 25874776  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatg-ttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||| ||||||||||||| |||||||||||||||||||||| ||||| ||| |||||| ||||||||||||||    
T  25874777 gtcattgatctttgttgttattgtaatgtatgaatattatgtttttgttaaaaagaaaagaaaatgcatgtga 25874849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 48251708 - 48251811
Alignment:
Q  95 atgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatg 194  Q
    |||| ||||||||||||||||||||||||   ||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| |||||||||||    
T  48251708 atgtgaggaactttatttatgtttttgttgaatcaatgatctttgttgttattgtaatgtatggatattatgttttgctaaaaagaaaagaaaatgcatg 48251807  T
Q  195 tgat 198  Q
    ||||    
T  48251808 tgat 48251811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 27926606 - 27926766
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    |||||||||||||||||| ||||| |||   |||| ||||||||||||||| ||| |||          |||||||  |||||||||||||||| |||      
T  27926606 tttgtttttgttgaatataatgagttttacctatgtttttgttaaatcaaagaacttta----------atgtaagagactttatttatgtttt-gttga 27926694  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  27926695 gtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtga 27926766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 48251487 - 48251568
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactt 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||| | ||| ||| |||| |||||||||||| ||||||||    
T  48251487 tttgtttttgttgaatatgatgagctttatttatgcttttgttaacttaaagaactttatatttattaaatgtgaggaactt 48251568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 32836847 - 32836738
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||| ||||||| |||  |||||||||||||||||| |||| ||||||||||| || ||||||  ||| || |||||||||||||| | ||||| |||||    
T  32836847 tgaatcaagaagctttacttttgttgaatatgatgaactttatttatgctttttttcaatcaaggaactttgtttttattaaatgtcatgaactgtattt 32836748  T
Q  113 atgtttttgt 122  Q
    ||||||||||    
T  32836747 atgtttttgt 32836738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 123
Target Start/End: Complemental strand, 32847681 - 32847584
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtt 123  Q
    ||||||||||| |||||||||||  ||| |||||| ||||||| ||||||| ||| || ||||| |||||||| | ||||||||||||||||||||||    
T  32847681 tttgtttttgtggaatatgatgaattttatttatgtttttgttgaatcaaagaactttgtttttgttaaatgttatgaactttatttatgtttttgtt 32847584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 13084707 - 13084791
Alignment:
Q  55 tttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgt 143  Q
    |||||| |||||||||||||||| |    ||||||||||||||||| ||| ||||||||||||||||||  |||| |||||||||||||    
T  13084707 tttatgattttgttaaatcaaaaga----atttttattaaatgtaaagaattttatttatgtttttgttgagtcattgatctttgttgt 13084791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 26188001 - 26187906
Alignment:
Q  103 aactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    ||||||| |||||||||||||  |  |||||||||| |||| |||| |||||||||||||||| |||||| || |||||  |||||||||||||||    
T  26188001 aactttaattatgtttttgttgaggtaatgatctttattgttattgcaatgtatgaatattatattttgcgaaaaagaatagaaaatgcatgtgat 26187906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 36584478 - 36584410
Alignment:
Q  102 gaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgtttt 170  Q
    ||||||||||||||||||| ||   ||||||||||||||||| ||| ||||||||||||||||| ||||    
T  36584478 gaactttatttatgtttttcttgaatcaatgatctttgttgttattataatgtatgaatattatatttt 36584410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 171
Target Start/End: Complemental strand, 12149118 - 12149029
Alignment:
Q  82 ttatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttg 171  Q
    |||||| | |||||||||  ||||||||||||||||||| ||  ||||||||||||||||||  || |||| |||  |||||||||||||    
T  12149118 ttatttctgttaaatgtagtgaactttatttatgtttttattgagtcaatgatctttgttgttgttataatctatcgatattatgttttg 12149029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 36584542 - 36584468
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattattt 87  Q
    |||||||| ||  ||||||||||||||||||||||| |||| |||||  |||||| |||||||| ||| ||||||    
T  36584542 tgaagcaataaactttgtttttgttgaatatgatgaactttatttatatttttgtcaaatcaaagaactttattt 36584468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 9176868 - 9176773
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaacttt 108  Q
    |||| ||||||| | ||||||||||||||||||||  |||| |||||| ||| ||| |||||| |||| || | ||| |||||||| | |||||||    
T  9176868 tgaatcaagaagatatgtttttgttgaatatgatggactttatttatgttttagttgaatcaagaaactttgtctttgttaaatgtcaagaacttt 9176773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 37341670 - 37341603
Alignment:
Q  52 ttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttt 119  Q
    ||||||||| ||||||| ||||||||||| | |||||| |||||||| | ||||||||| || |||||    
T  37341670 ttgtttatgtttttgttgaatcaaaaaacttaatttttgttaaatgttatgaactttatctacgtttt 37341603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 5295044 - 5294986
Alignment:
Q  214 atttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatat 272  Q
    |||||||||||||| |||  ||  ||||||||||||||| ||||| |||||||||||||    
T  5295044 atttcatatttatctaacggaggggacacggatatcacactatccgcatccatgaatat 5294986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 12148856 - 12148798
Alignment:
Q  214 atttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatat 272  Q
    |||||||||||||| |||  ||| ||||||||||||||| ||||| |||||||| ||||    
T  12148856 atttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 12148798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 186
Target Start/End: Complemental strand, 32836415 - 32836378
Alignment:
Q  149 taatgtatgaatattatgttttgctaataagaaacgaa 186  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  32836415 taatatatgaatattatgttttggtaataagaaacgaa 32836378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 8576911 - 8576735
Alignment:
Q  21 gaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgttttt 120  Q
    |||| ||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||| |||||||||||||||  |||  |||||||||||||||||    
T  8576911 gaagctttgtttttgttgaatatgatgagctttacttatgtttttgttaaatcaaataactttatttttattaaattgaagagactttatttatgttttt 8576812  T
Q  121 gtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||  |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  8576811 gttgagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtga 8576735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 10788632 - 10788461
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||||||| ||  |||||||||||| |||||||  ||||||||||||||||||||      
T  10788632 tttgtttttgttgaatatgatgaactttacttatgcttttgttaaatcaaagaaatttatttttattatatgtaagagactttatttatgtttttgttga 10788533  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
     ||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||    
T  10788532 ctcaatgatctttgttgttattgtaatgtatgaatattctgttttgctaaaaagaaaagaaaatgcatgtga 10788461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 35167247 - 35167432
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    ||||| |||||| |||||||||||||||||||||||  |||  ||   |||||||||||||||| ||||||||||||||||||||| ||  |||||||||    
T  35167247 tgaagtaagaagctttgtttttgttgaatatgatgacttttacttgaacttttgttaaatcaaataacattatttttattaaatgtgagagactttattt 35167346  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    |||||||||||  |||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||| |||||||||| ||||    
T  35167347 atgtttttgttaagtcaatgatctttgttgttattgtaatgtacggatattatgttttgctaaaaagaaaagaaaatgcatatgat 35167432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 7622526 - 7622349
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| ||| |||||||||||||||||||||||| ||| || ||| ||||||||||||||| ||| |||| |||||||||||||| | || ||||||    
T  7622526 tgaagcaa-aagctttgtttttgttgaatatgatgagatttatt-atgtttttgttaaatcaaagaactttatctttattaaatgtaaaggacattattt 7622429  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||  ||||||||||||     | ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  7622428 atgtttttgttgagtcaatgatctt-----ttattgtaatgtatggatattatgttttgctaaaaagaaaagaaaatgcatgtga 7622349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 28582309 - 28582125
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| ||  ||||| ||||||||||||||||| |||| |||||| ||||||||||||||| ||  |||| ||||||||||||||| | ||||||||    
T  28582309 tgaagcaaaaaactttgtatttgttgaatatgatgaactttatttatgtttttgttaaatcaaagaaatttatatttattaaatgtaagaagctttattt 28582210  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    |||||||| |   ||||||||| |||||||  ||| |||| |||| ||||||||||||||||| |||||| |||||||||||||||    
T  28582209 atgtttttatcgagtcaatgatttttgttgctattttaat-tatggatattatgttttgctaaaaagaaaagaaaatgcatgtgat 28582125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 642094 - 642190
Alignment:
Q  86 ttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaa 182  Q
    |||||||||||||||   ||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  642094 ttttattaaatgtaaaagactttatttatgtttttgttaagtcaatgatctttgttgttattgtaatgtatgaatattttgttttgctaaaaagaaa 642190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 198
Target Start/End: Original strand, 10408945 - 10409108
Alignment:
Q  34 tgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatga 133  Q
    |||| |||||||||| |||| ||||| |||| ||||||||||| ||  |||  | ||| ||||||||||| ||||| |||||||||||||  ||||||||    
T  10408945 tgttaaatatgatgaactttatttatactttagttaaatcaaagaagtttaaatatatcaaatgtaaggagctttagttatgtttttgttaagtcaatga 10409044  T
Q  134 tctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    ||| |||||| ||| ||||| ||||||||||| ||||||||| ||||||  ||||||||||||||    
T  10409045 tctatgttgttattataatgcatgaatattatattttgctaaaaagaaa-aaaaatgcatgtgat 10409108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 7245529 - 7245605
Alignment:
Q  99 aaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaa 175  Q
    |||||||||||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  7245529 aaggaactttatttatgtttttgttgagtcaatgatctttgttgttattgtaatgtatgaatattatgttttactaa 7245605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 173
Target Start/End: Original strand, 34433171 - 34433319
Alignment:
Q  25 ttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgttt 124  Q
    |||| ||||| || ||||||||||| |||  |||   ||||||||||| ||| ||| |||||| |||||||||||||  ||||||||||  ||||||||     
T  34433171 ttttttttttttttaatatgatgagttttacttaaatttttgttaaattaaataactttatttgtattaaatgtaagagactttatttacatttttgtta 34433270  T
Q  125 ggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgct 173  Q
     |||||||||||||||||| ||||||||||||  |||||||||||||||    
T  34433271 agtcaatgatctttgttgttattgtaatgtatagatattatgttttgct 34433319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 123
Target Start/End: Original strand, 17930213 - 17930323
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||| ||||||| ||||||||||||||||||||||| |||| |||||| ||||||| ||||||| ||| || ||||| |||||||| | |||||||||||    
T  17930213 tgaatcaagaagctttgtttttgttgaatatgatgaactttatttatgtttttgttgaatcaaagaactttgtttttcttaaatgtcatgaactttattt 17930312  T
Q  113 atgtttttgtt 123  Q
    || ||||||||    
T  17930313 atatttttgtt 17930323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 642002 - 642059
Alignment:
Q  17 gcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatca 74  Q
    |||||||| |||||||||||||||||||||||| |||  ||| |||||||||||||||    
T  642002 gcaagaagctttgtttttgttgaatatgatgagttttacttaagcttttgttaaatca 642059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 272
Target Start/End: Complemental strand, 28581990 - 28581914
Alignment:
Q  196 gatatgcatagagaatgaatttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatat 272  Q
    |||||| |||| | ||| |||||||||||||| |||  || ||||| |||||||||| |||||||||||||| ||||    
T  28581990 gatatgaatagggtatggatttcatatttatctaacggagcagacatggatatcacactatccacatccatggatat 28581914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 3926362 - 3926179
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| |||||||||||  |||||||||||||||||||  | ||||||||||||||||||| ||| ||||||||||||||||||||  |||||||||    
T  3926362 tgaagcaa-aagttttgtttacgttgaatatgatgagctttactcatgcttttgttaaatcaaagaactttatttttattaaatgtaagagactttattt 3926264  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||  ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  3926263 atgtttttgttgagtcaatgatttttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtga 3926179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 39207091 - 39207262
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    |||||||||||||||||||||||| | |  ||||| ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||      
T  39207091 tttgtttttgttgaatatgatgagttgtacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagggactttatttatgtttttgttgt 39207190  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||| |||||||||    
T  39207191 gtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaattgcatgtga 39207262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 35188555 - 35188738
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| ||| ||| ||| |||||||||| |||||||||  ||||| ||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  35188555 tgaagcaa-aagctttatttatgttgaatataatgagctttacttatgattttgttaaatcaaataactttatttttattaaatgtaagggactttattt 35188653  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||||||||||||||||||| |||||| |||||| |||||||    
T  35188654 atgtttttgttgagtcaatgatctttgttgttattgtaatttatgaatattatgttttgctaaaaagaaaagaaaatacatgtga 35188738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 23429402 - 23429219
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| ||| |||||||  |||||||||| |||| |||  ||| | ||||||||||||||| ||| ||||||||||||||||||| | |||||||||    
T  23429402 tgaagcaa-aagctttgtttacgttgaatatggtgagttttacttacgtttttgttaaatcaaataactttatttttattaaatgtaacggactttattt 23429304  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||  || ||||||||||||||| ||||| || |||||||||||||||||||||| |||||| ||||||||||||||    
T  23429303 atgtttttgttgagtaaatgatctttgttgttattgtgatatatgaatattatgttttgctaaaaagaaaagaaaatgcatgtga 23429219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 2209699 - 2209518
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||||||| ||||||||||||||||||||| |||||| ||||    ||| | | |||||| ||| ||||||||||||||| |||||||| ||| ||    
T  2209699 tgaagcaagaagctttgtttttgttgaatatgataagctttatttaa---tttttcagatcaaagaactttatttttattaaatataaggaacgttaatt 2209603  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    |||||||||||  |||||||||||||| ||| ||| | ||||| | ||||||||||||||||| |||||| |||||||||||||||    
T  2209602 atgtttttgttgagtcaatgatctttg-tgttattatgatgtacggatattatgttttgctaaaaagaaaagaaaatgcatgtgat 2209518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 42878924 - 42879017
Alignment:
Q  82 ttatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaa 175  Q
    ||||||||||||| ||||||| ||||||||||||||||||||  || ||||||||||||||| ||||||||||||||||||||  |||||||||    
T  42878924 ttatttttattaagtgtaagggactttatttatgtttttgttgagttaatgatctttgttgttattgtaatgtatgaatattacattttgctaa 42879017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 26621459 - 26621358
Alignment:
Q  97 gtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtg 196  Q
    ||||| |||||||||||||||||||||  |||||| || ||| |||| |||||||||||||||||||||| ||||| || |||||| ||||||  |||||    
T  26621459 gtaagaaactttatttatgtttttgttgagtcaataattttttttgttattgtaatgtatgaatattatgctttgcaaaaaagaaaagaaaatatatgtg 26621360  T
Q  197 at 198  Q
    ||    
T  26621359 at 26621358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 104 - 197
Target Start/End: Original strand, 33742765 - 33742860
Alignment:
Q  104 actttatttat-gtttttgtttggtcaatgat-ctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    ||||||||||| |||||| ||  ||||||||| |||| |||| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  33742765 actttatttattgtttttattgagtcaatgattctttattgttattgtaatgtatgaatattatgttttgttaaaaagaaaagaaaatgcatgtga 33742860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 39800427 - 39800540
Alignment:
Q  62 ttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaata 161  Q
    ||||||| ||||||| ||  |||||| |||||||||||  ||||||||||||||||||| ||  ||||| ||||||||||||  || |||| |||  |||    
T  39800427 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 39800526  T
Q  162 ttatgttttgctaa 175  Q
    ||||||||||||||    
T  39800527 ttatgttttgctaa 39800540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 197
Target Start/End: Complemental strand, 42837017 - 42836965
Alignment:
Q  145 attgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  42837017 attgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtga 42836965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 42837665 - 42837602
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattattttt 89  Q
    ||||||| ||||||||||||||||||||  ||||| ||||||||||||||| ||| ||||||||    
T  42837665 tttgtttatgttgaatatgatgagctttacttatgtttttgttaaatcaaagaactttattttt 42837602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 26621520 - 26621460
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatca 74  Q
    |||||||||||  |||||||| || |||||||||||||||| ||||||||||||||||||||    
T  26621520 tgaagcaagaaactttgtttt-gtagaatatgatgagctttatttatgcttttgttaaatca 26621460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 123
Target Start/End: Complemental strand, 39886863 - 39886822
Alignment:
Q  82 ttatttttattaaatgtaaggaactttatttatgtttttgtt 123  Q
    |||||||||||||| |||| ||||||||||||||||||||||    
T  39886863 ttatttttattaaacgtaatgaactttatttatgtttttgtt 39886822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 39207402 - 39207460
Alignment:
Q  214 atttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatat 272  Q
    |||||||||||||| |||  || |||||||||||||||| ||||| |||||||| ||||    
T  39207402 atttcatatttatctaacggagcagacacggatatcacactatccgcatccatggatat 39207460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 23429058 - 23428993
Alignment:
Q  214 atttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatatttattta 279  Q
    |||||||||||||| | |  || ||||| |||||||||| ||||| ||||||||||||| ||||||    
T  23429058 atttcatatttatctatcggagcagacaaggatatcacactatccgcatccatgaatatctattta 23428993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 40057061 - 40057000
Alignment:
Q  82 ttatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgt 143  Q
    |||||| |||||||||||  ||||||||||||||||||| ||  ||||| ||| ||||||||    
T  40057061 ttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatttttgttgt 40057000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 40056809 - 40056749
Alignment:
Q  212 gaatttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatat 272  Q
    |||||||||||||||| |||  ||| || |||||||||||| ||||| |||||||| ||||    
T  40056809 gaatttcatatttatctaacggagtggaaacggatatcacactatccgcatccatggatat 40056749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 5110376 - 5110193
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| ||| |||||||||||||||||||||||| |||  ||||  ||||||||||||||| ||| ||||||||||||||||||||| || ||||||    
T  5110376 tgaagcaa-aagctttgtttttgttgaatatgatgagttttacttatatttttgttaaatcaaataactttatttttattaaatgtaagggacattattt 5110278  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  5110277 atgtttttgttgagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtga 5110193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 5704764 - 5704588
Alignment:
Q  21 gaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgttttt 120  Q
    |||| ||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||| ||||||||||||||||||||  ||||||||||| |||||    
T  5704764 gaagctttgtttttgttgaatatgatgagctttacttatgtttttgttaaatcaaataactttatttttattaaatgtaagtgactttatttatattttt 5704665  T
Q  121 gtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||  |||||||||||||||||| ||||||||||||||||||||||||||||||| || ||| ||||||||||||||    
T  5704664 gttgagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaataaaagaaaatgcatgtga 5704588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 5938896 - 5938713
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    ||||||||||| ||| |||||||||||||||||||| ||||  ||||  ||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  5938896 tgaagcaagaacttt-gtttttgttgaatatgatgaactttacttatatttttgttaaatcaaataactttatttttattaaatgtaagggactttattt 5938798  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  5938797 atgtttttgttgagtcaatgatctttgttgttattgtaatgtatgaatactatgttttgctaaaaagaaaagaaaatgcatgtga 5938713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 31575918 - 31576086
Alignment:
Q  29 gtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtc 128  Q
    |||| ||||||||||||||| ||||  ||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||  |||    
T  31575918 gtttatgttgaatatgatgaactttacttatgtttttgttaaatcaaaaaactttatttttattaaatgtaagggactttatttatgtttttgttgagtc 31576017  T
Q  129 aatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  31576018 aatgatctttgttattattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtga 31576086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 13807713 - 13807530
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| ||| ||||||| ||||||||||||||| ||||  ||||| ||||| ||||||||| ||| ||||||||||| ||||||||  |||||||||    
T  13807713 tgaagcaa-aagctttgtttatgttgaatatgatgaactttacttatgtttttgctaaatcaaagaactttatttttattgaatgtaagagactttattt 13807615  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  13807614 atgtttttgttgagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaacagaaaagaaaatgcatgtga 13807530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 39 - 197
Target Start/End: Original strand, 45151225 - 45151383
Alignment:
Q  39 aatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatcttt 138  Q
    |||||||||||||||  ||||  ||||||||||||||| ||  ||||||||||||||||||||| ||||| ||||||||||||||   ||||||||||||    
T  45151225 aatatgatgagctttacttatatttttgttaaatcaaagaattttatttttattaaatgtaagggactttgtttatgtttttgttgaatcaatgatcttt 45151324  T
Q  139 gttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
T  45151325 gttgttattgtaatgtatgaatattatgttttgctaaaaagaaaaaaaaatgcatgtga 45151383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 13626275 - 13626417
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgctttt-gttaaatcaaaaaacattatttttattaaatgtaaggaactttatt 111  Q
    |||||||||| | ||||||||||| ||||||||||| ||||  ||||| |||| |||||||| || ||| ||||||||||||||||| ||| ||||||||    
T  13626275 tgaagcaaga-gctttgtttttgtcgaatatgatgaactttacttatgttttttgttaaatcgaagaactttatttttattaaatgttagggactttatt 13626373  T
Q  112 tatgtttttgtttggtcaatgatctttgttgtaattgtaatgta 155  Q
    ||||||||||||  |||||||||||||| ||| |||||||||||    
T  13626374 tatgtttttgttgagtcaatgatctttggtgttattgtaatgta 13626417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 42625039 - 42625152
Alignment:
Q  62 ttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaata 161  Q
    ||||||| ||||||| ||  |||||| |||||||||||  ||||||||||||||||||| ||  ||||| ||||||||||||  || |||| |||  |||    
T  42625039 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 42625138  T
Q  162 ttatgttttgctaa 175  Q
    ||||||||||||||    
T  42625139 ttatgttttgctaa 42625152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 45458420 - 45458507
Alignment:
Q  82 ttatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttt 169  Q
    ||||||||||||||   ||  |||||||||||||||||||||   ||||||||||||||||| || |||||||||| |||||||||||    
T  45458420 ttatttttattaaacaaaacaaactttatttatgtttttgttgaatcaatgatctttgttgttatggtaatgtatggatattatgttt 45458507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 5938561 - 5938501
Alignment:
Q  212 gaatttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatat 272  Q
    |||||||||||||||| |||  ||| ||||||||||||||| ||| |||||||||| ||||    
T  5938561 gaatttcatatttatctaacggagtggacacggatatcacactattcacatccatggatat 5938501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 31457433 - 31457240
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaac--attatttttattaaatgtaaggaactttat 110  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| |||   ||||||||||||||| |||||||||||||    
T  31457433 tgaagcaagaagttttgtttttgttgaatatgatgaactttatttatacttttgttaaatcaaagaactttttatttttattaaatataaggaactttat 31457334  T
Q  111 ttatgtttttgtttggtcaatgatc------tttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    |||||||||||||  ||||||||||      |||||||| ||||||||| ||||||||||||||||||||| |||||| |||||||||||||||    
T  31457333 ttatgtttttgttgagtcaatgatctttgtttttgttgttattgtaatgcatgaatattatgttttgctaaaaagaaaagaaaatgcatgtgat 31457240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 36298944 - 36298758
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| ||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||| ||| |||||| |||||||| ||| | |||||||||    
T  36298944 tgaagcaataagctttgtttttgttgaatatgatgagctttatttatacttttgtcaaatcaaagaactttatttgtattaaatataaagtactttattt 36298845  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgata 199  Q
    |||||||||||  |||||||||||||||||| |||||||| |||| |||||||| |||||||| ||||||  |||||||| ||||||    
T  36298844 atgtttttgttgagtcaatgatctttgttgttattgtaatatatggatattatggtttgctaaaaagaaaataaaatgcacgtgata 36298758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 23809637 - 23809820
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| ||| ||||||| ||||||||||||||| ||||  ||||| ||||||||||||||| ||  ||||||||||||||||||||| ||||| |||    
T  23809637 tgaagcaa-aagatttgtttatgttgaatatgatgaactttacttatgtttttgttaaatcaaagaattttatttttattaaatgtaagggacttttttt 23809735  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| || |||||||||||| |||||| | ||||||||||||    
T  23809736 atgtttttgttgagtcaatgatctttgttgttattgtaatgtatgaacatgatgttttgctaaaaagaaaagtaaatgcatgtga 23809820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 5973117 - 5972946
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    ||||||| ||||||||||||||||||||  ||||| ||||||||||||||| ||| ||||||||||||||||||||  ||||||||||||| ||| ||      
T  5973117 tttgtttatgttgaatatgatgagctttacttatgtttttgttaaatcaaataactttatttttattaaatgtaagagactttatttatgtattttttga 5973018  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||||| | |||| |||||||| |||||    
T  5973017 gtcaatgatcttttttgttattgtaatgtatgaatattatgttttgctaaaatgaaaagaaaatgcctgtga 5972946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 42 - 197
Target Start/End: Original strand, 38440431 - 38440586
Alignment:
Q  42 atgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgtt 141  Q
    ||||||| ||||  ||||| |||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  38440431 atgatgaactttacttatgttttttttaaatcaaagaacattatttttattaaatgcaaggaactttatttatgtttttgttgagtcaatgatctttgtt 38440530  T
Q  142 gtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    || |||||||||||||||||||||||||| |||| |||||| |||||| |||||||    
T  38440531 gttattgtaatgtatgaatattatgttttactaaaaagaaaagaaaatccatgtga 38440586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 2944036 - 2944221
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| ||  ||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||| |||| ||||||||||||||| ||| ||||||    
T  2944036 tgaagcaaaaatatttatttttgttgaatatgatgagttttatttatgcttttgttaaatcaaagaactttatatttattaaatgtaagaaacattattt 2944135  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
     |||||||||   |||||||||||||||||| ||||||||| ||| ||| ||| ||||||||| |||||| |||||||||||||||    
T  2944136 ttgtttttgtcgagtcaatgatctttgttgttattgtaatgcatggatactatattttgctaaaaagaaaagaaaatgcatgtgat 2944221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 26 - 175
Target Start/End: Complemental strand, 28636523 - 28636374
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    ||||||| ||||||||||||||| ||||  ||||| ||||||||||||||| ||| ||||||||||||||||||||  ||||||||||||||||||||      
T  28636523 tttgtttatgttgaatatgatgaactttacttatgtttttgttaaatcaaataactttatttttattaaatgtaagagactttatttatgtttttgttga 28636424  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaa 175  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||    
T  28636423 gtcaatgatctttgtttttattgtaatgtatgaatattatgttttgctaa 28636374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 11039160 - 11039332
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    ||||||||| ||||||||||||| ||||  |||| |||||||||||||||| ||| ||||||||||||||||||||  ||||||||| |||||||||||     
T  11039160 tttgtttttattgaatatgatgaactttacttatacttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttgtgtttttgtttc 11039259  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataag-aaacgaaaatgcatgtga 197  Q
    || |||||||||| |||| |||||||| |||||||||||||||||||||| ||| ||| ||||||||||||||    
T  11039260 gttaatgatctttattgttattgtaatctatgaatattatgttttgctaaaaagaaaaagaaaatgcatgtga 11039332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 31 - 198
Target Start/End: Original strand, 30541465 - 30541632
Alignment:
Q  31 ttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaa 130  Q
    |||||||||||||||||||||||  ||| ||||||| || |||||| ||| |||||||||||||||||||   |||| |||||||||||| ||  |||||    
T  30541465 ttttgttgaatatgatgagctttacttaagcttttgatatatcaaagaactttatttttattaaatgtaatagacttgatttatgtttttcttaagtcaa 30541564  T
Q  131 tgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| || ||| |||||||||||||||    
T  30541565 tgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaataaaagaaaatgcatgtgat 30541632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 22519160 - 22519340
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||| ||||||  ||||||||||||||||||||| | |||| |||||||||||||||||||||| ||| ||| ||||||||||||||| |||||||||||    
T  22519160 tgaaacaagaaactttgtttttgttgaatatgataaactttatttatgcttttgttaaatcaaagaactttacttttattaaatgtaatgaactttattt 22519259  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatg 194  Q
    ||| ||| |||  |||||||| |||||||||  |||||||||||  |||||||||||| |||| |||||| ||| |||||||    
T  22519260 atg-tttcgttgagtcaatgaactttgttgtttttgtaatgtatagatattatgtttttctaaaaagaaaagaatatgcatg 22519340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 33189542 - 33189377
Alignment:
Q  28 tgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggt 127  Q
    |||||||||||||||| |||||||||   ||||| |||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||  ||    
T  33189542 tgtttttgttgaatat-atgagctttagctatgcctttgttaaatcaaagaactttatttttattaaatgtaagg-actttatttatgtttttgttgagt 33189445  T
Q  128 caatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    ||||||||||| |||| ||||||||||||| |||||||||||| |||| |||||| |||||  |||||||    
T  33189444 caatgatcttt-ttgttattgtaatgtatg-atattatgtttttctaaaaagaaaagaaaacacatgtga 33189377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 7767218 - 7767051
Alignment:
Q  28 tgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggt 127  Q
    ||||||| ||||||||||||||||||    || |||||||||||||||| ||| |||| ||||||||||||||   | ||||| ||||||||||||  ||    
T  7767218 tgtttttcttgaatatgatgagctttaccaatacttttgttaaatcaaagaactttatgtttattaaatgtaaaagattttatgtatgtttttgttgagt 7767119  T
Q  128 caatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgt 195  Q
    ||||||| |||||||| |||||||| ||||||||| |||||||||||| |||||| ||||||||||||    
T  7767118 caatgatttttgttgttattgtaatctatgaatataatgttttgctaaaaagaaaagaaaatgcatgt 7767051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 190
Target Start/End: Original strand, 1053121 - 1053256
Alignment:
Q  55 tttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgt 154  Q
    ||||| ||||||| |||| ||| ||| |||||||||||||||| |||||| ||||||||||||||||||  || ||||||||||||||| || |||||||    
T  1053121 tttatacttttgtcaaatgaaagaactttatttttattaaatgcaaggaattttatttatgtttttgttgagttaatgatctttgttgttatcgtaatgt 1053220  T
Q  155 atgaatattatgttttgctaataagaaacgaaaatg 190  Q
    ||||||||||||||||||||| || ||| |||||||    
T  1053221 atgaatattatgttttgctaaaaataaaagaaaatg 1053256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 15954668 - 15954780
Alignment:
Q  86 ttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacga 185  Q
    ||||||||||||| |||||||||||||||||||||| |  |||||||||||||||||| ||||| |||||||  |||||||||||||||| |||||| ||    
T  15954668 ttttattaaatgttaggaactttatttatgtttttggtgagtcaatgatctttgttgttattgtcatgtatgtctattatgttttgctaaaaagaaaaga 15954767  T
Q  186 aaatgcatgtgat 198  Q
    |||||||||||||    
T  15954768 aaatgcatgtgat 15954780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 193
Target Start/End: Complemental strand, 25502287 - 25502130
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    ||||||||||||||||||||||| ||||  ||||| ||||||||||||||| | | |||          |||||||  ||||||||||||||||||||      
T  25502287 tttgtttttgttgaatatgatgaactttacttatgtttttgttaaatcaaagagcttta----------atgtaagagactttatttatgtttttgttga 25502198  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcat 193  Q
    |||||||||||||||||| | ||||||||||||||||||| ||||||||| ||||||  |||||||||    
T  25502197 gtcaatgatctttgttgttaatgtaatgtatgaatattatattttgctaaaaagaaaataaaatgcat 25502130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 198
Target Start/End: Original strand, 40910567 - 40910638
Alignment:
Q  127 tcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  40910567 tcaatgatctttgttgttattgtaatgtatgaatattacgttttgctaaaaagaaaagaaaatgcatgtgat 40910638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 94
Target Start/End: Original strand, 15954049 - 15954130
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaa 94  Q
    |||||||||||||||| ||||||||| ||||||| |||||| |||||||||||||||||||||  ||| |||||||||||||    
T  15954049 tgaagcaagaagttttatttttgttggatatgatcagctttatttatgcttttgttaaatcaatgaactttatttttattaa 15954130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 130
Target Start/End: Original strand, 14753968 - 14754083
Alignment:
Q  15 aagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttat 114  Q
    |||||||||  |||||||||||| |||||||||| |||| |||||| || |||||||||||  ||| |  ||||| |||||||| | |||| ||||| ||    
T  14753968 aagcaagaaactttgtttttgttaaatatgatgaactttatttatgtttgtgttaaatcaaggaacttagtttttgttaaatgtgatgaacattattcat 14754067  T
Q  115 gtttttgtttggtcaa 130  Q
    |||||||||| |||||    
T  14754068 gtttttgtttagtcaa 14754083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 27337046 - 27336933
Alignment:
Q  62 ttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaata 161  Q
    ||||||| ||||||| ||  |||||| |||||||||||  ||||||||| ||||||||| ||  ||||| ||||||||||||  || |||| |||  |||    
T  27337046 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatctatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 27336947  T
Q  162 ttatgttttgctaa 175  Q
    ||||||||||||||    
T  27336946 ttatgttttgctaa 27336933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 175
Target Start/End: Complemental strand, 47925054 - 47924981
Alignment:
Q  105 ctttatttatgtttttgtttggtcaatgatctttgttgtaattgt---aatgtatgaatattatgttttgctaa 175  Q
    |||||||||||||||||||  ||||| ||||||| |||| |||||   |||||||| |||||||||||||||||    
T  47925054 ctttatttatgtttttgttgagtcaaggatctttattgttattgttgtaatgtatgtatattatgttttgctaa 47924981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 279
Target Start/End: Original strand, 11039490 - 11039556
Alignment:
Q  213 aatttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatatttattta 279  Q
    |||||||||||||||||||  ||| ||||||||||||| ||||||  |||||||| |||| ||||||    
T  11039490 aatttcatatttatccaacggagtggacacggatatcatattatctgcatccatggatatctattta 11039556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 196
Target Start/End: Complemental strand, 31759041 - 31758949
Alignment:
Q  105 ctttatttatgtttttgtttg-gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtg 196  Q
    |||||| ||| ||||||| || |||||| ||||||||| | ||||||||||||  ||||||||||||| ||| |||||| ||| ||| |||||    
T  31759041 ctttatctatatttttgtctgagtcaataatctttgttcttattgtaatgtatatatattatgttttgttaaaaagaaaagaacatgtatgtg 31758949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 38440743 - 38440810
Alignment:
Q  212 gaatttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatatttattta 279  Q
    ||||||||||||||||||||  ||  |||||| |||||||| ||||| |||||||| ||||| |||||    
T  38440743 gaatttcatatttatccaacgaagcggacacgaatatcacactatccgcatccatggatattcattta 38440810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 17562755 - 17562926
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||| |||||||||||||| ||  || ||||||||| |||||||||| |    
T  17562755 tttgtttttgttgaatatgatgagctttacttatgtttttgttaaatcaaataactttatttttattaaacgtcggggactttatttctgtttttgttgg 17562854  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  17562855 gtcaatgatctttgttgttattgtaatgtatgtatattatgttttgctaaaaagaaaagaaaatgcatgtga 17562926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 31585202 - 31585373
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    ||||||||||||||||||||||||||||  ||||| ||||||||||| ||| ||| |||||||||||||| ||  || |||||||||||||||||||| |    
T  31585202 tttgtttttgttgaatatgatgagctttacttatgtttttgttaaattaaataactttatttttattaaacgtcggggactttatttatgtttttgttgg 31585301  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  31585302 gtcaatgatctttgttgttattgtaatgtatgtatattatgttttgctaaaaagaaaagaaaatgcatgtga 31585373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 29678276 - 29678460
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||||| || |||||||||||||||||||||||||||  |||| |||||||||||||||| ||| ||||||||||||||||||||| | |||||||    
T  29678276 tgaagcaaga-gtcttgtttttgttgaatatgatgagctttacttatacttttgttaaatcaaagaactttatttttattaaatgtaagggaatttattt 29678374  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatg-ttttgctaataagaaacgaaaatgcatgtga 197  Q
    ||| |||||||  |||||||||||||||||| ||||||||||||||||| |||| |||| |||| |||||| ||||||||||||||    
T  29678375 atgattttgttgagtcaatgatctttgttgttattgtaatgtatgaataatatgtttttactaaaaagaaaagaaaatgcatgtga 29678460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 36728710 - 36728893
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||||| | ||||||||||||||||||||||| ||||   | || ||||||||||||||| ||| |||||||| |||||||||||  |||||||||    
T  36728710 tgaagcaaga-gctttgtttttgttgaatatgatgaactttacatgtgtttttgttaaatcaaataactttatttttcttaaatgtaagagactttattt 36728808  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||  |||||||||||||||||| |||||||||| || ||||||||||||||||| |||||| ||||||||||||||    
T  36728809 atgtttttgttgagtcaatgatctttgttgttattgtaatgtgtggatattatgttttgctaaaaagaaaagaaaatgcatgtga 36728893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 47140943 - 47140771
Alignment:
Q  26 tttgtttttgttgaatatgatg-agctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgttt 124  Q
    |||||||||||||||||||||| || |||  ||||||||||||||||||||| ||| ||||||||||||||||||||  ||||||||||||||||||||     
T  47140943 tttgtttttgttgaatatgatggagttttacttatgcttttgttaaatcaaagaactttatttttattaaatgtaagagactttatttatgtttttgttg 47140844  T
Q  125 ggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
     ||||||||| ||||||||  |||||||||||| ||||||||||||||||| | |||| ||||||||||||||    
T  47140843 agtcaatgatttttgttgttgttgtaatgtatgtatattatgttttgctaaaatgaaaagaaaatgcatgtga 47140771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 31 - 198
Target Start/End: Original strand, 19884384 - 19884551
Alignment:
Q  31 ttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaa 130  Q
    ||||||||||||||||||||| | ||||| ||||||| |||||||| || ||||||| ||||||| |||||||| ||||||||| ||||||||  |||||    
T  19884384 ttttgttgaatatgatgagctatatttatacttttgtcaaatcaaagaatattatttgtattaaaagtaaggaattttatttatatttttgttgagtcaa 19884483  T
Q  131 tgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    ||||||||||| | ||||||||||||||||||||||||||||||| |||||| ||||| ||| |||||    
T  19884484 tgatctttgttattattgtaatgtatgaatattatgttttgctaaaaagaaaagaaaacgcacgtgat 19884551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 189
Target Start/End: Original strand, 48379048 - 48379222
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| |||||||| || |||||||||||||| | |||  ||||| ||||||||||||||| ||| ||||||||||||||||||||  |||||||||    
T  48379048 tgaagcaa-aagttttgcttatgttgaatatgatg-gttttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagagactttattt 48379145  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaat 189  Q
    |||||||||||  |||||||||||||||||| |||||||||||||| ||| |||||||||||| |||||| ||||||    
T  48379146 atgtttttgttgagtcaatgatctttgttgttattgtaatgtatgactatgatgttttgctaaaaagaaaagaaaat 48379222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 62 - 193
Target Start/End: Complemental strand, 11894410 - 11894279
Alignment:
Q  62 ttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaata 161  Q
    ||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||| ||| |||||||||||||    
T  11894410 ttttgttaaatcaaataactttatttttattaaatgtaagcaactttatttatgtttttgttgagtcaatgatctttgttgttattataatgtatgaata 11894311  T
Q  162 ttatgttttgctaataagaaacgaaaatgcat 193  Q
    |||||||||| ||| |||||| ||||||||||    
T  11894310 ttatgttttgttaaaaagaaaagaaaatgcat 11894279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 57 - 197
Target Start/End: Original strand, 31292760 - 31292897
Alignment:
Q  57 tatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtat 156  Q
    |||| ||||||||||||||| ||| |||||||| ||| |||||||| |||||||||||||||||| |  ||||||||||   ||||| ||| ||||||||    
T  31292760 tatgtttttgttaaatcaaataactttatttttgttacatgtaagggactttatttatgtttttgctgagtcaatgatc---gttgttattataatgtat 31292856  T
Q  157 gaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    ||||||||||||||||||| |||||| ||||||||||||||    
T  31292857 gaatattatgttttgctaaaaagaaaagaaaatgcatgtga 31292897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 38264378 - 38264474
Alignment:
Q  102 gaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    ||||||||||||| ||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||| || ||  |||||||||||||||    
T  38264378 gaactttatttatatttttgttgagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgctaaaaataatagaaaatgcatgtgat 38264474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 102 - 197
Target Start/End: Complemental strand, 25987468 - 25987373
Alignment:
Q  102 gaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    ||||||||||||||||||||||  || |||||||||| |||| ||| ||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  25987468 gaactttatttatgtttttgttgagttaatgatcttttttgttattttaatgtatgaatattatgttttgctaaaaagaaaagaaaatgcatgtga 25987373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 196
Target Start/End: Original strand, 2191841 - 2191935
Alignment:
Q  102 gaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtg 196  Q
    ||||||||||||||||||||||  ||||||||| |||||||| |||||||||||   |||||||||||| |||| |||||| |||||||||||||    
T  2191841 gaactttatttatgtttttgttgagtcaatgatttttgttgttattgtaatgtagtgatattatgttttactaaaaagaaaagaaaatgcatgtg 2191935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 13 - 87
Target Start/End: Original strand, 2191775 - 2191851
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgat--gagctttgtttatgcttttgttaaatcaaaaaacattattt 87  Q
    ||||||||||||||||||||||||||||||||||  ||| ||| ||||| ||||||| |||||||| ||| ||||||    
T  2191775 tgaagcaagaagttttgtttttgttgaatatgatgagagttttatttatacttttgtcaaatcaaagaactttattt 2191851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 38264314 - 38264393
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttatt 92  Q
    |||||||||||  ||||||||  ||||||||||| | |||| ||||||||||||| |||||||| ||| |||||| ||||    
T  38264314 tgaagcaagaaactttgttttaattgaatatgataatctttatttatgcttttgtcaaatcaaagaactttatttatatt 38264393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 25987533 - 25987458
Alignment:
Q  11 gatgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattattt 87  Q
    |||||||||||| | |||||||||||||||||||| |||||||  ||||| |||||||| ||| || ||| ||||||    
T  25987533 gatgaagcaaga-gctttgtttttgttgaatatgacgagctttacttatgtttttgttatatctaagaactttattt 25987458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 15378910 - 15378871
Alignment:
Q  159 atattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  15378910 atattatgttttgctaaaaagaaaagaaaatgcatgtgat 15378871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 272
Target Start/End: Original strand, 19884706 - 19884768
Alignment:
Q  210 atgaatttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatat 272  Q
    ||||||||||||||| ||||||  ||  ||||| ||||||||| ||||| |||||||||||||    
T  19884706 atgaatttcatatttgtccaacggagcggacacagatatcacactatccgcatccatgaatat 19884768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Original strand, 25294228 - 25294286
Alignment:
Q  214 atttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatat 272  Q
    |||||||||||||| |||  ||| ||||||||||||||| ||||| |||||||| ||||    
T  25294228 atttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 25294286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 47140612 - 47140547
Alignment:
Q  214 atttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatatttattta 279  Q
    ||||||||||||||||||  ||  |||||| |||||||| ||||| |||||||| |||| ||||||    
T  47140612 atttcatatttatccaacggagcggacacgaatatcacactatccgcatccatggatatctattta 47140547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 52252759 - 52252710
Alignment:
Q  102 gaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaa 151  Q
    ||||||||||||||||||| ||  ||||| |||||||||||| |||||||    
T  52252759 gaactttatttatgtttttattgagtcaaagatctttgttgttattgtaa 52252710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 42555482 - 42555300
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| ||| ||||||||||||||||||||| | |||| |||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||||||    
T  42555482 tgaagcaataagctttgtttttgttgaatatgataacctttatttatgcttttgttaaattaaagaactttatttttattaaatgtaaggatctttattt 42555383  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgt 195  Q
    |||||||||||  |||||||| ||||||||| ||||||||||||| |||||||| ||| |||| |||||| ||||||||||||    
T  42555382 atgtttttgttgagtcaatgaactttgttgttattgtaatgtatgtatattatgcttttctaaaaagaaaagaaaatgcatgt 42555300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 40714812 - 40714997
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||||||| |||||||||||||||||||||||||||| || ||| ||||||||||||||| ||| |||||||||||||| ||||||||| ||||||    
T  40714812 tgaagcaagaagctttgtttttgttgaatatgatgagctttattaatgtttttgttaaatcaaagaactttatttttattaaaagtaaggaacattattt 40714911  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    |||||||||||  |||||||||||||||  | ||||||||||||  ||||||| ||||||||| || ||| |||||||||||||||    
T  40714912 atgtttttgttgagtcaatgatctttgtctttattgtaatgtattgatattatattttgctaaaaacaaaagaaaatgcatgtgat 40714997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 51357338 - 51357154
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||| ||| ||| |||||||||||||||||||||||||||| ||||| ||||||| | |||||| ||| |||||||||||||||||||||||||| ||||    
T  51357338 tgaaacaataagctttgtttttgttgaatatgatgagctttatttatacttttgtcatatcaaataactttatttttattaaatgtaaggaactt-attt 51357240  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    |||||| ||||  |||||| ||||||||||| ||||||||||||| ||||||||||||||||| |||||| |||||||||||||||    
T  51357239 atgtttctgttgagtcaataatctttgttgttattgtaatgtatggatattatgttttgctaaaaagaaaagaaaatgcatgtgat 51357154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 8819285 - 8819457
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    |||||||||||||||||| ||||||||| ||||| ||||||| |||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||      
T  8819285 tttgtttttgttgaatattatgagctttatttatacttttgtcaaatcaaataactttacttttattaaatgtaaggaactttatttatgtttttgttga 8819384  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
     ||||||||||||||||| ||| ||||||||  ||||||||||||||||| |||||| |||||||||||||||    
T  8819385 atcaatgatctttgttgttattataatgtatagatattatgttttgctaaaaagaaaagaaaatgcatgtgat 8819457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 38951790 - 38951607
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||||| | ||||||||||||||||||||||||||||  ||||| ||||||||||||||| ||| |||||||||   ||||||||| ||||||| |    
T  38951790 tgaagcaaga-gctttgtttttgttgaatatgatgagctttacttatgtttttgttaaatcaaagaactttatttttagctaatgtaagggactttatat 38951692  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||| ||||||  |||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| ||||||||||||||    
T  38951691 atgtgtttgttgagtcaatgatctttgttgttattgtaatgtatgaatattatgttttgttaaaaagaaaagaaaatgcatgtga 38951607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 23627009 - 23626827
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    ||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| ||| |||| |||    |||||||||||| ||||||    
T  23627009 tgaagcaagaagttttgtttttgttaaatatgatgagctttatatatgcttttgttaaatcaaagaactttatatttg---aatgtaaggaaccttattt 23626913  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    |||||||||||  |||||||||||||||||| |||||||| |||| |||||||||||| ||||  ||||| |||||||||||||||    
T  23626912 atgtttttgttgagtcaatgatctttgttgttattgtaatatatggatattatgtttttctaaacagaaaagaaaatgcatgtgat 23626827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 36464804 - 36464969
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    |||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||| |||||||||||||| ||      
T  36464804 tttgtttttgttgaatatgatgagctttgtttatacttttgtcaaatcaaataactttatttttattaaatgtaaggaac-ttatttatgtttttattga 36464902  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    |||||| ||||||      |||||||||||||||||| |||||||||||| |||||| |||||||||||||||    
T  36464903 gtcaataatcttt------attgtaatgtatgaatatcatgttttgctaaaaagaaaagaaaatgcatgtgat 36464969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 41039502 - 41039328
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttattt 112  Q
    |||||||| ||| |||| || |||||||||||||| | |||  ||||| ||||||||||||||| ||| ||||||||||||||||||||  |||||||||    
T  41039502 tgaagcaa-aagctttgcttatgttgaatatgatg-gttttacttatgtttttgttaaatcaaagaactttatttttattaaatgtaagagactttattt 41039405  T
Q  113 atgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaat 189  Q
    |||||||||||  |||||||||||||||||| |||||||||||||| ||| |||||||||||| |||||| ||||||    
T  41039404 atgtttttgttgagtcaatgatctttgttgttattgtaatgtatgactatgatgttttgctaaaaagaaaagaaaat 41039328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 28 - 197
Target Start/End: Complemental strand, 43624570 - 43624399
Alignment:
Q  28 tgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatg--tttttgtttg 125  Q
    ||||||| ||||||||| | ||||||   |||||||||||||||||||| ||| |||||||||||||||||||||  ||||||| |||  ||||| |||     
T  43624570 tgtttttattgaatatggtaagctttacatatgcttttgttaaatcaaagaactttatttttattaaatgtaaggggctttattaatggtttttttttta 43624471  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||||||||| |||||||| |||| | ||||||||||||||| |||||| ||||||||||||||    
T  43624470 gtcaatgatctttgttgttattgtaatatatggaaattatgttttgctaaaaagaaaagaaaatgcatgtga 43624399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 29117144 - 29117006
Alignment:
Q  60 gcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaa 159  Q
    ||||||||||||| ||||||| ||||||||||||||||| |   ||||||||||||||||||||   ||||||||||||||| | |||||||||||||||    
T  29117144 gcttttgttaaataaaaaaactttatttttattaaatgtcaaagactttatttatgtttttgttaaatcaatgatctttgttattattgtaatgtatgaa 29117045  T
Q  160 tattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    |||||||||||||||| ||||||  ||||||||||||||    
T  29117044 tattatgttttgctaagaagaaaataaaatgcatgtgat 29117006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 26 - 195
Target Start/End: Complemental strand, 22278470 - 22278301
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttg 125  Q
    |||||||||||  ||||| |||| ||||  ||||| ||||||||||||||| ||  ||||||||||||||||||||| ||||||||||||||||||||      
T  22278470 tttgtttttgtcaaatattatgaactttacttatgtttttgttaaatcaaagaattttatttttattaaatgtaagggactttatttatgtttttgttaa 22278371  T
Q  126 gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgt 195  Q
    |||||||||||||||||| |  || ||| ||| |||||||||||||| || |||||| ||||||||||||    
T  22278370 gtcaatgatctttgttgttaccgtgatgcatggatattatgttttgccaaaaagaaaagaaaatgcatgt 22278301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 17120332 - 17120428
Alignment:
Q  102 gaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    |||||||||||| |||||||||  |||||||||| ||||||| ||||||||||||| ||||||||||||| ||| |||||| |||||||||||||||    
T  17120332 gaactttatttaggtttttgttgagtcaatgatcattgttgttattgtaatgtatggatattatgttttgttaaaaagaaaagaaaatgcatgtgat 17120428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 30 - 197
Target Start/End: Complemental strand, 19841882 - 19841727
Alignment:
Q  30 tttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtca 129  Q
    ||||| ||||||||||||| ||||  ||||||||||||||||||||| ||| |||||||||||||||||||            || ||||||||  ||||    
T  19841882 tttttcttgaatatgatgaactttacttatgcttttgttaaatcaaagaactttatttttattaaatgtaa------------atatttttgttgagtca 19841795  T
Q  130 atgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    |||||||||||||| ||||||||||| | ||||||||||||  ||| |||||| ||||| ||||||||    
T  19841794 atgatctttgttgttattgtaatgtacggatattatgttttcttaaaaagaaaagaaaacgcatgtga 19841727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 17120281 - 17120342
Alignment:
Q  26 tttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattattt 87  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||    
T  17120281 tttgtttttgttgaatatgatgagctttatttatgcttttgttaaatcaaagaactttattt 17120342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 40571936 - 40572026
Alignment:
Q  82 ttatttttattaaatgtaaggaactttatttatgtttttgtttg-gtcaatgatctttgttgtaattgtaatgtatgaatattatgttttg 171  Q
    |||||| |||||||||||  |||||||||||||||||||  ||| ||||| ||||||||||||  || |||| |||  |||||||||||||    
T  40571936 ttatttctattaaatgtagtgaactttatttatgttttttattgagtcaaggatctttgttgttgttataatctatcgatattatgttttg 40572026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 26330397 - 26330339
Alignment:
Q  56 ttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttat 114  Q
    ||||| ||||||| ||||||| ||| |||||||| |||||||| | |||||||||||||    
T  26330397 ttatgtttttgttgaatcaaataactttatttttgttaaatgtgatgaactttatttat 26330339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 41039157 - 41039099
Alignment:
Q  214 atttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatat 272  Q
    |||||||||||||| |||  ||  ||||||||||||||||||||| |||||||| ||||    
T  41039157 atttcatatttatctaacggagcggacacggatatcacattatccgcatccatggatat 41039099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 8819587 - 8819663
Alignment:
Q  196 gatatgcatagagaatgaatttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatat 272  Q
    |||||| |||| ||| ||||||||||||| ||||||  ||| ||| || |||||||| ||||| |||||||| ||||    
T  8819587 gatatggatagggaacgaatttcatatttgtccaacggagtggacgcgaatatcacactatccgcatccatggatat 8819663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 6865 - 7033
Alignment:
Q  29 gtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtc 128  Q
    |||| ||||||||||||||| ||||  ||||| ||||||||||||||| ||  |||||||||||| |||||| | || | |||||||||||||||  |||    
T  6865 gtttatgttgaatatgatgaactttacttatgtttttgttaaatcaaagaattttatttttattatatgtaatggacctcatttatgtttttgttgagtc 6964  T
Q  129 aatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtga 197  Q
    ||||||||||||||| |||||||  |||||||||||||||||||||| |||||| ||||||||||||||    
T  6965 aatgatctttgttgttattgtaaaatatgaatattatgttttgctaaaaagaaaagaaaatgcatgtga 7033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 62527 - 62456
Alignment:
Q  127 tcaatgatctttgttgtaattgtaatgtatgaatattatgttttgctaataagaaacgaaaatgcatgtgat 198  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  62527 tcaatgatctttgttgttattgtaatgtatgaatattacgttttgctaaaaagaaaagaaaatgcatgtgat 62456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 66685 - 66611
Alignment:
Q  13 tgaagcaagaagttttgtttttgttgaatatgatgagctttgtttatgcttttgttaaatcaaaaaacattattt 87  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||| ||| ||||||    
T  66685 tgaagcaagaagttttgtttttggtgaatatgatgagctttatttatacttttgtcaaatcaaagaactttattt 66611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 143
Target Start/End: Complemental strand, 66621 - 66580
Alignment:
Q  102 gaactttatttatgtttttgtttggtcaatgatctttgttgt 143  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  66621 gaactttatttatgtttttgttgagtcaatgatctttgttgt 66580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 22168 - 22055
Alignment:
Q  62 ttttgttaaatcaaaaaacattatttttattaaatgtaaggaactttatttatgtttttgtttggtcaatgatctttgttgtaattgtaatgtatgaata 161  Q
    ||||||| ||||||| ||  |||||| |||||||||||  ||||||||||||||||||| ||  ||||| ||||||||||||  || |||| |||  |||    
T  22168 ttttgtttaatcaaagaattttatttctattaaatgtagtgaactttatttatgtttttattgagtcaaggatctttgttgttgttataatctatcgata 22069  T
Q  162 ttatgttttgctaa 175  Q
    ||||||||||||||    
T  22068 ttatgttttgctaa 22055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 21888 - 21830
Alignment:
Q  214 atttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatat 272  Q
    |||||||||||||| |||  ||| ||||||||||||||| ||||| |||||||| ||||    
T  21888 atttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 21830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 7741 - 7683
Alignment:
Q  214 atttcatatttatccaacatagtagacacggatatcacattatccacatccatgaatat 272  Q
    |||||||||||||| |||  ||| ||||||||||||||| ||||| |||||||| ||||    
T  7741 atttcatatttatctaacggagtggacacggatatcacactatccgcatccatggatat 7683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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