View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5539_high_3 (Length: 705)

Name: NF5539_high_3
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5539_high_3
NF5539_high_3
[»] chr6 (14 HSPs)
chr6 (187-491)||(33010663-33010961)
chr6 (1-125)||(33010479-33010603)
chr6 (187-356)||(32683490-32683654)
chr6 (336-428)||(33011111-33011204)
chr6 (187-356)||(32685200-32685364)
chr6 (438-501)||(32683344-32683407)
chr6 (438-501)||(32685054-32685117)
chr6 (406-472)||(32683409-32683475)
chr6 (406-472)||(32685119-32685185)
chr6 (498-541)||(32682954-32682997)
chr6 (400-451)||(33011205-33011256)
chr6 (52-93)||(4749414-4749455)
chr6 (402-455)||(28711376-28711429)
chr6 (39-95)||(27434752-27434808)
[»] scaffold0022 (1 HSPs)
scaffold0022 (1-103)||(101101-101204)
[»] scaffold0018 (1 HSPs)
scaffold0018 (19-103)||(67256-67340)
[»] chr4 (5 HSPs)
chr4 (1-103)||(24091-24194)
chr4 (1-78)||(13914737-13914815)
chr4 (56-103)||(14288161-14288208)
chr4 (61-103)||(13914751-13914793)
chr4 (39-95)||(18066749-18066805)
[»] chr8 (7 HSPs)
chr8 (11-103)||(287337-287429)
chr8 (39-103)||(10895907-10895971)
chr8 (55-103)||(12167193-12167241)
chr8 (55-103)||(12411621-12411669)
chr8 (52-96)||(16291972-16292016)
chr8 (52-103)||(17895037-17895088)
chr8 (24-103)||(25113411-25113491)
[»] chr2 (2 HSPs)
chr2 (39-103)||(45049537-45049601)
chr2 (55-103)||(5243273-5243321)
[»] scaffold0289 (1 HSPs)
scaffold0289 (1-103)||(22132-22235)
[»] chr3 (6 HSPs)
chr3 (39-96)||(6440879-6440936)
chr3 (52-103)||(6445181-6445232)
chr3 (52-103)||(9270763-9270814)
chr3 (39-103)||(20919306-20919370)
chr3 (39-103)||(20928268-20928332)
chr3 (39-103)||(37197867-37197931)
[»] scaffold1113 (1 HSPs)
scaffold1113 (261-326)||(1336-1403)
[»] scaffold0961 (1 HSPs)
scaffold0961 (261-326)||(2214-2281)
[»] chr1 (6 HSPs)
chr1 (55-103)||(3417366-3417414)
chr1 (1-96)||(3832169-3832266)
chr1 (28-93)||(11440851-11440916)
chr1 (52-103)||(8314035-8314086)
chr1 (1-78)||(8314021-8314099)
chr1 (52-93)||(11440836-11440877)
[»] chr5 (2 HSPs)
chr5 (42-103)||(19205915-19205976)
chr5 (55-96)||(29857750-29857791)
[»] scaffold0191 (1 HSPs)
scaffold0191 (3-89)||(17054-17139)
[»] scaffold0003 (1 HSPs)
scaffold0003 (39-95)||(52555-52611)


Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 187 - 491
Target Start/End: Original strand, 33010663 - 33010961
Alignment:
Q  187 gtacataataaccgaacacgcatagaccaagatttgcatgcttggctcttcccaagtatctaactgacactcacaacttgaggataaaacggaacatagt 286  Q
    ||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||      |||||||||||||||||||||||||||||    
T  33010663 gtacataataaccaaacacgcatagaccaagatttgcaagcttggctcttcccaagtatctatct------cacaacttgaggataaaacggaacatagt 33010756  T
Q  287 tcaatttccttttcttactccacacaactgcctaattttatttacaacatccaacatcctttatttgaacccc-tttttcttataagtattctttataag 385  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| | || ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  33010757 tcaatttccttttcttactccacacaactgcttaattttatttacaccttc-aacatcctttatttgaaccccctttttcttataagtattctttataag 33010855  T
Q  386 aggtctaacatttatggatgtctttcatcttaagcttcgtactcctgttggtttggaacttcagctgccttagatgtagctttttcatctatcttctttt 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33010856 aggtctaacatttatggatgtctttcatcttaagcttcgtactcctgctggtttggaacttcagctgccttagatgtagctttttcatctatcttctttt 33010955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 33010479 - 33010603
Alignment:
Q  1 tcatttaatgtttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagc 100  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||  |||||||||||||||| ||| |||||||||||||||||    
T  33010479 tcatttaatgtttttcaccaaccaattaaaattgatgttgattcaattatattttattagttaatcaaaatagatcatgacttatttatttttcatcagc 33010578  T
Q  101 caactgagctaagctcacgagtacg 125  Q
    |||||||||||||||||||||||||    
T  33010579 caactgagctaagctcacgagtacg 33010603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 187 - 356
Target Start/End: Complemental strand, 32683654 - 32683490
Alignment:
Q  187 gtacataataaccgaacacgcatagaccaagatttgcatgcttggctcttcccaagtatctaactgacactcacaacttgaggataaaacggaacatagt 286  Q
    |||||||||||||  |||||||||||| |||||||||  ||||||| |||||||||| |||||     ||||||||||| |||||||||| |||||||||    
T  32683654 gtacataataaccagacacgcatagac-aagatttgcgagcttggcacttcccaagtgtctaaa----actcacaacttaaggataaaacagaacatagt 32683560  T
Q  287 tcaatttccttttcttactccacacaactgcctaattttatttacaacatccaacatcctttatttgaac 356  Q
    ||| ||| | |||||||||| ||||||||||||||||||||||||| | | |||||||||||||||||||    
T  32683559 tcagttttcctttcttactctacacaactgcctaattttatttacagccttcaacatcctttatttgaac 32683490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 336 - 428
Target Start/End: Complemental strand, 33011204 - 33011111
Alignment:
Q  336 tccaacatcctttatttgaacccc-tttttcttataagtattctttataagaggtctaacatttatggatgtctttcatcttaagcttcgtact 428  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33011204 tccaacatcctttatttgaacccccttttttttataagtattctttataagaggtctaacatttatggacgtctttcatcttaagcttcgtact 33011111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 187 - 356
Target Start/End: Complemental strand, 32685364 - 32685200
Alignment:
Q  187 gtacataataaccgaacacgcatagaccaagatttgcatgcttggctcttcccaagtatctaactgacactcacaacttgaggataaaacggaacatagt 286  Q
    |||||||||||||  |||||||||||| |||||||||  ||||||| |||||||||| |||||     ||||||||||| |||||||||| |||||||||    
T  32685364 gtacataataaccagacacgcatagac-aagatttgcgagcttggcacttcccaagtgtctaaa----actcacaacttaaggataaaacagaacatagt 32685270  T
Q  287 tcaatttccttttcttactccacacaactgcctaattttatttacaacatccaacatcctttatttgaac 356  Q
    ||| ||| | |||||||||  ||||||||||||||||||||||||| | | |||||||||||||||||||    
T  32685269 tcagttttcctttcttactatacacaactgcctaattttatttacagccttcaacatcctttatttgaac 32685200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 438 - 501
Target Start/End: Complemental strand, 32683407 - 32683344
Alignment:
Q  438 ttggaacttcagctgccttagatgtagctttttcatctatcttcttttgaacttgaactctcag 501  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32683407 ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcag 32683344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 438 - 501
Target Start/End: Complemental strand, 32685117 - 32685054
Alignment:
Q  438 ttggaacttcagctgccttagatgtagctttttcatctatcttcttttgaacttgaactctcag 501  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32685117 ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcag 32685054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 406 - 472
Target Start/End: Complemental strand, 32683475 - 32683409
Alignment:
Q  406 tctttcatcttaagcttcgtactcctgttggtttggaacttcagctgccttagatgtagctttttca 472  Q
    |||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||| ||| ||||    
T  32683475 tctttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagatgtaccttcttca 32683409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 406 - 472
Target Start/End: Complemental strand, 32685185 - 32685119
Alignment:
Q  406 tctttcatcttaagcttcgtactcctgttggtttggaacttcagctgccttagatgtagctttttca 472  Q
    |||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||| ||| ||||    
T  32685185 tctttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagatgtaccttcttca 32685119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 541
Target Start/End: Complemental strand, 32682997 - 32682954
Alignment:
Q  498 tcagcccccattaacattgttaacatttcatgaaaaaacttgcc 541  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||    
T  32682997 tcagaccccataaactttgttaacatttcatgaaaaaacttgcc 32682954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 451
Target Start/End: Complemental strand, 33011256 - 33011205
Alignment:
Q  400 tggatgtctttcatcttaagcttcgtactcctgttggtttggaacttcagct 451  Q
    ||||| |||||| |||||| |||||| |||||| ||||||||||||||||||    
T  33011256 tggatttctttcttcttaatcttcgttctcctgctggtttggaacttcagct 33011205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 4749414 - 4749455
Alignment:
Q  52 ttttattagccaatcaaaatagatcataactcatttattttt 93  Q
    |||| |||||||||||||| ||||||| ||||||||||||||    
T  4749414 ttttcttagccaatcaaaagagatcatgactcatttattttt 4749455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 28711429 - 28711376
Alignment:
Q  402 gatgtctttcatcttaagcttcgtactcctgttggtttggaacttcagctgcct 455  Q
    ||||| |||||| |||||||||   ||||||||||||||||||||||| |||||    
T  28711429 gatgtttttcatgttaagcttcaatctcctgttggtttggaacttcaggtgcct 28711376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 27434752 - 27434808
Alignment:
Q  39 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttca 95  Q
    ||||||| |||| ||||||||||||||||| || || ||| ||||||||| ||||||    
T  27434752 tgactcatttattttttattagccaatcaagatggaccatgactcatttagttttca 27434808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 101101 - 101204
Alignment:
Q  1 tcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcag 99  Q
    |||||||||| ||||||| |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||| |||||| ||||||||||||||||| ||    
T  101101 tcatttaatgctttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaatggatcatgactcatttatttttcataag 101200  T
Q  100 ccaa 103  Q
    ||||    
T  101201 ccaa 101204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 67340 - 67256
Alignment:
Q  19 caactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    |||| ||||||||| |||  ||||||| |||| |||||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  67340 caaccaattaaaatggatcatgactcatttattttttattagcaaatcaaaatggatcataactcatttatttttcattagccaa 67256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 24194 - 24091
Alignment:
Q  1 tcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcag 99  Q
    |||||||||| ||||||| |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||| ||| || ||||||||||||||||| ||    
T  24194 tcatttaatgatttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaatggataatgactcatttatttttcattag 24095  T
Q  100 ccaa 103  Q
    ||||    
T  24094 ccaa 24091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 13914815 - 13914737
Alignment:
Q  1 tcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcat 78  Q
    |||||||||| ||||||| |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||| ||||||    
T  13914815 tcatttaatgctttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaattgatcat 13914737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 14288208 - 14288161
Alignment:
Q  56 attagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    ||||||||||||||||  ||||| ||||||||||||||||| ||||||    
T  14288208 attagccaatcaaaatgaatcatgactcatttatttttcattagccaa 14288161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 61 - 103
Target Start/End: Complemental strand, 13914793 - 13914751
Alignment:
Q  61 ccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    |||||||||||||||||| |||||||||||||| || ||||||    
T  13914793 ccaatcaaaatagatcatgactcatttattttttattagccaa 13914751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 18066805 - 18066749
Alignment:
Q  39 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttca 95  Q
    ||||||| |||| ||||||||||||||||| || || ||| ||||||||| ||||||    
T  18066805 tgactcatttattttttattagccaatcaagatggaccatgactcatttagttttca 18066749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 287337 - 287429
Alignment:
Q  11 tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    ||||||| |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||| |||||| |||||||||||||| || ||||||    
T  287337 tttttcatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaatggatcatgactcatttattttttattagccaa 287429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 10895907 - 10895971
Alignment:
Q  39 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    ||||||| |||| ||||||||| |||||||||| |||||| ||||||||||||||||| ||||||    
T  10895907 tgactcatttattttttattagtcaatcaaaatggatcatgactcatttatttttcattagccaa 10895971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 12167241 - 12167193
Alignment:
Q  55 tattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    ||||| ||||||||||| |||||| ||||||||||||||||| ||||||    
T  12167241 tattatccaatcaaaatggatcatgactcatttatttttcatgagccaa 12167193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 12411669 - 12411621
Alignment:
Q  55 tattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    ||||| ||||||||||| |||||| ||||||||||||||||| ||||||    
T  12411669 tattatccaatcaaaatggatcatgactcatttatttttcatgagccaa 12411621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 16291972 - 16292016
Alignment:
Q  52 ttttattagccaatcaaaatagatcataactcatttatttttcat 96  Q
    |||||||| ||||||||||| |||||| |||||||||||||||||    
T  16291972 ttttattatccaatcaaaatggatcatgactcatttatttttcat 16292016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 17895088 - 17895037
Alignment:
Q  52 ttttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    |||| |||||||||||||| ||||||| |||||||||||||| || ||||||    
T  17895088 ttttcttagccaatcaaaagagatcatgactcatttattttttatgagccaa 17895037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 25113491 - 25113411
Alignment:
Q  24 aattaaaattgatgttgactcaattatattttattagccaatcaaaa--tagatcataactcatttatttttcatcagccaa 103  Q
    ||||||||| |||  ||||||| |||||| || ||| ||||||||||  |||||||| ||||||||||||||||| ||||||    
T  25113491 aattaaaatagattatgactcacttatatatt-ttaaccaatcaaaaaatagatcatgactcatttatttttcattagccaa 25113411  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 45049537 - 45049601
Alignment:
Q  39 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    ||||||| |||  |||||||||||||||||||| |||||| ||||||||||||||||| ||||||    
T  45049537 tgactcatttaatttttattagccaatcaaaatggatcatgactcatttatttttcattagccaa 45049601  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 5243321 - 5243273
Alignment:
Q  55 tattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    ||||| ||||||||||| |||||| ||||||||||||||||| ||||||    
T  5243321 tattatccaatcaaaatggatcatgactcatttatttttcatgagccaa 5243273  T

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Target: scaffold0289 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 22235 - 22132
Alignment:
Q  1 tcatttaatg-tttttcaccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcag 99  Q
    |||||||||| ||||||| |||| ||| |||||  ||  ||||||| |||| ||||||| | ||||||||||| ||||| ||||||||||||||||| ||    
T  22235 tcatttaatgctttttcatcaaccaatcaaaatatatcatgactcatttattttttatttgtcaatcaaaataaatcatgactcatttatttttcattag 22136  T
Q  100 ccaa 103  Q
    ||||    
T  22135 ccaa 22132  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 6440936 - 6440879
Alignment:
Q  39 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcat 96  Q
    |||||||||||| ||||||| ||||||||||||  ||||| |||||||||||||||||    
T  6440936 tgactcaattattttttatttgccaatcaaaatgaatcatgactcatttatttttcat 6440879  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 6445232 - 6445181
Alignment:
Q  52 ttttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    |||| |||||||||||||| ||||||| |||||||||||||| || ||||||    
T  6445232 ttttcttagccaatcaaaagagatcatgactcatttattttttatgagccaa 6445181  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 9270814 - 9270763
Alignment:
Q  52 ttttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    ||||||| |||||| |||||| ||||| ||||||||||||||||| ||||||    
T  9270814 ttttatttgccaattaaaataaatcatgactcatttatttttcattagccaa 9270763  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 20919306 - 20919370
Alignment:
Q  39 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    ||||||| |||| ||||||||||||||||||||   |||| || |||||| |||||| |||||||    
T  20919306 tgactcatttattttttattagccaatcaaaatgattcatgacacatttagttttcaccagccaa 20919370  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 20928268 - 20928332
Alignment:
Q  39 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    ||||||| |||| ||||||||||||||||||||   |||| || |||||| |||||| |||||||    
T  20928268 tgactcatttattttttattagccaatcaaaatgattcatgacacatttagttttcaccagccaa 20928332  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 37197867 - 37197931
Alignment:
Q  39 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    ||||||| |||| |||||||| |||||||||||   |||| || |||||| ||||||||||||||    
T  37197867 tgactcatttattttttattaaccaatcaaaatgattcatgacacatttagttttcatcagccaa 37197931  T

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Target: scaffold1113 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 1336 - 1403
Alignment:
Q  261 aacttgaggataaaacggaacatagttcaatttccttttcttactc--cacacaactgcctaatttta 326  Q
    ||||||||||||||||  |||||| |||||||||  ||||||||||  ||||||||||||||||||||    
T  1336 aacttgaggataaaacataacataattcaatttcaatttcttactctacacacaactgcctaatttta 1403  T

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Target: scaffold0961 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 2281 - 2214
Alignment:
Q  261 aacttgaggataaaacggaacatagttcaatttccttttcttactc--cacacaactgcctaatttta 326  Q
    ||||||||||||||||  |||||| |||||||||  ||||||||||  ||||||||||||||||||||    
T  2281 aacttgaggataaaacataacataattcaatttcaatttcttactctacacacaactgcctaatttta 2214  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 3417366 - 3417414
Alignment:
Q  55 tattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    |||||| |||||||||| |||||| ||||||||||||||||||||||||    
T  3417366 tattagtcaatcaaaatggatcatgactcatttatttttcatcagccaa 3417414  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 3832169 - 3832266
Alignment:
Q  1 tcatttaatgtttttc-accaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatc-ataactcatttatttttcat 96  Q
    |||||||||||||||| | |||| ||| ||||| ||| |||| ||| |||  |||||||||||||||||| | |||| || |||||||||||||||||    
T  3832169 tcatttaatgtttttctatcaaccaatcaaaatagatattgaatcatttactttttattagccaatcaaattggatcaatgactcatttatttttcat 3832266  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 11440851 - 11440916
Alignment:
Q  28 aaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttattttt 93  Q
    ||||| ||| || ||||| |||| ||||||||| |||||||||| |||||| ||||||||||||||    
T  11440851 aaaatggatcttaactcatttattttttattagtcaatcaaaatggatcatgactcatttattttt 11440916  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 8314086 - 8314035
Alignment:
Q  52 ttttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    |||||| | |||||||||||||||||| |||||||||||||| || ||||||    
T  8314086 ttttatcaaccaatcaaaatagatcatgactcatttattttttattagccaa 8314035  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 8314099 - 8314021
Alignment:
Q  1 tcatttaatgtttttc-accaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcat 78  Q
    |||||||||||||||  | |||| ||| ||||| |||  ||||||| |||| |||||||||||||||||||| ||||||    
T  8314099 tcatttaatgtttttttatcaaccaatcaaaatagatcatgactcatttattttttattagccaatcaaaattgatcat 8314021  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 11440836 - 11440877
Alignment:
Q  52 ttttattagccaatcaaaatagatcataactcatttattttt 93  Q
    |||||||| ||||||||||| |||| ||||||||||||||||    
T  11440836 ttttattaaccaatcaaaatggatcttaactcatttattttt 11440877  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 19205976 - 19205915
Alignment:
Q  42 ctcaattatattttattagccaatcaaaatagatcataactcatttatttttcatcagccaa 103  Q
    |||| |||| || |||||||||||| |||| |||||| |||||| |||||||||| ||||||    
T  19205976 ctcacttattttatattagccaatctaaatggatcatgactcatctatttttcatgagccaa 19205915  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 29857750 - 29857791
Alignment:
Q  55 tattagccaatcaaaatagatcataactcatttatttttcat 96  Q
    ||||| ||||||||||| |||||| |||||||||||||||||    
T  29857750 tattatccaatcaaaatggatcatgactcatttatttttcat 29857791  T

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Target: scaffold0191 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 17139 - 17054
Alignment:
Q  3 atttaatgttttt-caccaactaattaaaattgatgttgactcaattatattttattagccaatcaaaatagatcataactcatttat 89  Q
    ||||||||||||| || |||| ||| ||||| |||  ||||||| |||| |||||||| ||||| |||||||||||| ||| ||||||    
T  17139 atttaatgttttttcatcaaccaatcaaaatagat--tgactcatttattttttattaaccaattaaaatagatcatgacttatttat 17054  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 52611 - 52555
Alignment:
Q  39 tgactcaattatattttattagccaatcaaaatagatcataactcatttatttttca 95  Q
    ||||||| |||| ||||||||||||||||| || || ||| ||||||||| ||||||    
T  52611 tgactcatttattttttattagccaatcaagatggaccatgactcatttagttttca 52555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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