View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_high_32 (Length: 256)
Name: NF5539_high_32
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 46875067 - 46875312
Alignment:
| Q |
1 |
ctttgatacgtaaaagattactctatgcacccggtggattgctcaacctctgaaataaaccgattcaatatgctcctgtccaaaaacaacgactggatcg |
100 |
Q |
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| T |
46875067 |
ctttgatacgtaaaagattactctatgcacccggtggattgctcaacctctgaaataaaccgattcaatatgctcctgtccaaaaacaacgactggatcg |
46875166 |
T |
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| Q |
101 |
tagctcctgataggatttgcgcaatcgagagttacaatcagataaatatgaggggattttaagcaaattgaagggtctgcaaagcaaatctcatattggc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46875167 |
tagctcctgataggatttgcgcaatcgagagttacaatcagataaatatgaggggattttaagcaaattgaagggtctgcaaagcaaatctcatattggc |
46875266 |
T |
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| Q |
201 |
aagaaaatctaatgtatcccatgagcaggagtaggatgtacctttg |
246 |
Q |
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| T |
46875267 |
aagaaaatctaatgtatcccatgagcaggagtaggatgtacctttg |
46875312 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 23895211 - 23895174
Alignment:
| Q |
21 |
ctctatgcacccggtggattgctcaacctctgaaataa |
58 |
Q |
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| T |
23895211 |
ctctatgcaccccgtggattgctcaacctctgaaataa |
23895174 |
T |
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