View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5539_high_4 (Length: 705)

Name: NF5539_high_4
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5539_high_4
NF5539_high_4
[»] chr6 (12 HSPs)
chr6 (186-491)||(33010662-33010961)
chr6 (186-356)||(32683490-32683655)
chr6 (186-356)||(32685200-32685365)
chr6 (336-428)||(33011111-33011204)
chr6 (4-118)||(33010394-33010500)
chr6 (438-501)||(32683344-32683407)
chr6 (438-501)||(32685054-32685117)
chr6 (406-472)||(32683409-32683475)
chr6 (406-472)||(32685119-32685185)
chr6 (498-541)||(32682954-32682997)
chr6 (400-451)||(33011205-33011256)
chr6 (402-455)||(28711376-28711429)
[»] chr8 (17 HSPs)
chr8 (11-55)||(15605885-15605929)
chr8 (11-55)||(15614238-15614282)
chr8 (12-53)||(15624450-15624491)
chr8 (12-55)||(15637226-15637269)
chr8 (12-54)||(15605704-15605746)
chr8 (17-55)||(15637048-15637086)
chr8 (12-53)||(15648238-15648279)
chr8 (12-52)||(15637777-15637817)
chr8 (12-55)||(15637409-15637452)
chr8 (12-54)||(15605385-15605427)
chr8 (12-54)||(15613738-15613780)
chr8 (12-50)||(15613911-15613949)
chr8 (12-53)||(15606069-15606110)
chr8 (12-53)||(15614422-15614463)
chr8 (12-53)||(15637593-15637634)
chr8 (12-44)||(15624095-15624127)
chr8 (12-44)||(15647883-15647915)
[»] scaffold1113 (1 HSPs)
scaffold1113 (261-326)||(1336-1403)
[»] scaffold0961 (1 HSPs)
scaffold0961 (261-326)||(2214-2281)
[»] chr7 (1 HSPs)
chr7 (12-54)||(7946588-7946630)
[»] chr3 (1 HSPs)
chr3 (12-54)||(2766128-2766170)


Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-132; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 186 - 491
Target Start/End: Original strand, 33010662 - 33010961
Alignment:
Q  186 agtacataataaccgaacacgcatagaccaagatttgcatgcttggctcttcccaagtatctaactgacactcacaacttgaggataaaacggaacatag 285  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||      ||||||||||||||||||||||||||||    
T  33010662 agtacataataaccaaacacgcatagaccaagatttgcaagcttggctcttcccaagtatctatct------cacaacttgaggataaaacggaacatag 33010755  T
Q  286 ttcaatttccttttcttactccacacaactgcctaattttatttacaacatccaacatcctttatttgaacccc-tttttcttataagtattctttataa 384  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| | || ||||||||||||||||||||| |||||||||||||||||||||||||    
T  33010756 ttcaatttccttttcttactccacacaactgcttaattttatttacaccttc-aacatcctttatttgaaccccctttttcttataagtattctttataa 33010854  T
Q  385 gaggtctaacatttatggatgtctttcatcttaagcttcgtactcctgttggtttggaacttcagctgccttagatgtagctttttcatctatcttcttt 484  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33010855 gaggtctaacatttatggatgtctttcatcttaagcttcgtactcctgctggtttggaacttcagctgccttagatgtagctttttcatctatcttcttt 33010954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 186 - 356
Target Start/End: Complemental strand, 32683655 - 32683490
Alignment:
Q  186 agtacataataaccgaacacgcatagaccaagatttgcatgcttggctcttcccaagtatctaactgacactcacaacttgaggataaaacggaacatag 285  Q
    ||||||||||||||  |||||||||||| |||||||||  ||||||| |||||||||| |||||     ||||||||||| |||||||||| ||||||||    
T  32683655 agtacataataaccagacacgcatagac-aagatttgcgagcttggcacttcccaagtgtctaaa----actcacaacttaaggataaaacagaacatag 32683561  T
Q  286 ttcaatttccttttcttactccacacaactgcctaattttatttacaacatccaacatcctttatttgaac 356  Q
    |||| ||| | |||||||||| ||||||||||||||||||||||||| | | |||||||||||||||||||    
T  32683560 ttcagttttcctttcttactctacacaactgcctaattttatttacagccttcaacatcctttatttgaac 32683490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 186 - 356
Target Start/End: Complemental strand, 32685365 - 32685200
Alignment:
Q  186 agtacataataaccgaacacgcatagaccaagatttgcatgcttggctcttcccaagtatctaactgacactcacaacttgaggataaaacggaacatag 285  Q
    ||||||||||||||  |||||||||||| |||||||||  ||||||| |||||||||| |||||     ||||||||||| |||||||||| ||||||||    
T  32685365 agtacataataaccagacacgcatagac-aagatttgcgagcttggcacttcccaagtgtctaaa----actcacaacttaaggataaaacagaacatag 32685271  T
Q  286 ttcaatttccttttcttactccacacaactgcctaattttatttacaacatccaacatcctttatttgaac 356  Q
    |||| ||| | |||||||||  ||||||||||||||||||||||||| | | |||||||||||||||||||    
T  32685270 ttcagttttcctttcttactatacacaactgcctaattttatttacagccttcaacatcctttatttgaac 32685200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 336 - 428
Target Start/End: Complemental strand, 33011204 - 33011111
Alignment:
Q  336 tccaacatcctttatttgaacccc-tttttcttataagtattctttataagaggtctaacatttatggatgtctttcatcttaagcttcgtact 428  Q
    |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  33011204 tccaacatcctttatttgaacccccttttttttataagtattctttataagaggtctaacatttatggacgtctttcatcttaagcttcgtact 33011111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 33010500 - 33010394
Alignment:
Q  4 gttggtgaaaaacattaaatgagatgagcaatatgaagatgtcacgtgtacaggtgtacagtgtactgttgatttttaggaagctatttgtttattataa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||        |||| || |||||||||||||||||||||||  ||||||||||||||    
T  33010500 gttggtgaaaaacattaaatgagatgagcaatatgaagatgtcac--------gtgtccaatgtactgttgatttttaggaagccgtttgtttattataa 33010409  T
Q  104 tagagatagagatag 118  Q
    |||||||||||||||    
T  33010408 tagagatagagatag 33010394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 438 - 501
Target Start/End: Complemental strand, 32683407 - 32683344
Alignment:
Q  438 ttggaacttcagctgccttagatgtagctttttcatctatcttcttttgaacttgaactctcag 501  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32683407 ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcag 32683344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 438 - 501
Target Start/End: Complemental strand, 32685117 - 32685054
Alignment:
Q  438 ttggaacttcagctgccttagatgtagctttttcatctatcttcttttgaacttgaactctcag 501  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  32685117 ttggaacttcagctgccttagatgcagctttttcatctatcttcttttgaacttgaactctcag 32685054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 406 - 472
Target Start/End: Complemental strand, 32683475 - 32683409
Alignment:
Q  406 tctttcatcttaagcttcgtactcctgttggtttggaacttcagctgccttagatgtagctttttca 472  Q
    |||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||| ||| ||||    
T  32683475 tctttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagatgtaccttcttca 32683409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 406 - 472
Target Start/End: Complemental strand, 32685185 - 32685119
Alignment:
Q  406 tctttcatcttaagcttcgtactcctgttggtttggaacttcagctgccttagatgtagctttttca 472  Q
    |||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||| ||| ||||    
T  32685185 tctttcatcttaagcttcattctcctgctggtttggaacttgagctgccttagatgtaccttcttca 32685119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 498 - 541
Target Start/End: Complemental strand, 32682997 - 32682954
Alignment:
Q  498 tcagcccccattaacattgttaacatttcatgaaaaaacttgcc 541  Q
    |||| |||||| ||| ||||||||||||||||||||||||||||    
T  32682997 tcagaccccataaactttgttaacatttcatgaaaaaacttgcc 32682954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 400 - 451
Target Start/End: Complemental strand, 33011256 - 33011205
Alignment:
Q  400 tggatgtctttcatcttaagcttcgtactcctgttggtttggaacttcagct 451  Q
    ||||| |||||| |||||| |||||| |||||| ||||||||||||||||||    
T  33011256 tggatttctttcttcttaatcttcgttctcctgctggtttggaacttcagct 33011205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 455
Target Start/End: Complemental strand, 28711429 - 28711376
Alignment:
Q  402 gatgtctttcatcttaagcttcgtactcctgttggtttggaacttcagctgcct 455  Q
    ||||| |||||| |||||||||   ||||||||||||||||||||||| |||||    
T  28711429 gatgtttttcatgttaagcttcaatctcctgttggtttggaacttcaggtgcct 28711376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 15605885 - 15605929
Alignment:
Q  11 aaaaacattaaatgagatgagcaatatgaagatgtcacgtgtaca 55  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  15605885 aaaaacattaaatgagatgagaaatatgaagatgtcacgtgtaca 15605929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 15614238 - 15614282
Alignment:
Q  11 aaaaacattaaatgagatgagcaatatgaagatgtcacgtgtaca 55  Q
    ||||||||||||||||||||| |||||||||||||||||||||||    
T  15614238 aaaaacattaaatgagatgagaaatatgaagatgtcacgtgtaca 15614282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 15624450 - 15624491
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 53  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  15624450 aaaacattaaatgagatgagaaatatgaagatgtcacgtgta 15624491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 15637226 - 15637269
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtaca 55  Q
    |||||||||||||||||||| |||||||||||| ||||||||||    
T  15637226 aaaacattaaatgagatgagaaatatgaagatgacacgtgtaca 15637269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 15605704 - 15605746
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 54  Q
    |||||||||||||||||||| ||||||||||| ||||||||||    
T  15605704 aaaacattaaatgagatgagaaatatgaagatatcacgtgtac 15605746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 15637048 - 15637086
Alignment:
Q  17 attaaatgagatgagcaatatgaagatgtcacgtgtaca 55  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  15637048 attaaatgagatgagaaatatgaagatgtcacgtgtaca 15637086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 15648238 - 15648279
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 53  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  15648238 aaaacattaaatgagatgagaaatatgaagatgtcaggtgta 15648279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 52
Target Start/End: Original strand, 15637777 - 15637817
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgtgt 52  Q
    |||||||||||||||||||| ||||||||||| ||||||||    
T  15637777 aaaacattaaatgagatgagaaatatgaagatatcacgtgt 15637817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 15637409 - 15637452
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtaca 55  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||    
T  15637409 aaaacattaaatgagatgagaaatattaagatgtcacatgtaca 15637452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 15605385 - 15605427
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 54  Q
    |||||||||||||||||||| |||||||||||| ||| |||||    
T  15605385 aaaacattaaatgagatgagaaatatgaagatggcacatgtac 15605427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 15613738 - 15613780
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 54  Q
    |||||||||||||||||||| |||||||||||| ||| |||||    
T  15613738 aaaacattaaatgagatgagaaatatgaagatggcacatgtac 15613780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 15613911 - 15613949
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgt 50  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  15613911 aaaacattaaatgagatgagaaatatgtagatgtcacgt 15613949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 15606069 - 15606110
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 53  Q
    |||||||||||||||||||| ||||||||||| |||| ||||    
T  15606069 aaaacattaaatgagatgagaaatatgaagatatcacatgta 15606110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 15614422 - 15614463
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 53  Q
    |||||||||||||||||||| ||||||||||| |||| ||||    
T  15614422 aaaacattaaatgagatgagaaatatgaagatatcacatgta 15614463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 15637593 - 15637634
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgtgta 53  Q
    |||||||||||||||||||| ||||| |||||||||| ||||    
T  15637593 aaaacattaaatgagatgagaaatattaagatgtcacatgta 15637634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 15624095 - 15624127
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatg 44  Q
    |||||||||||||||||||| ||||||||||||    
T  15624095 aaaacattaaatgagatgagaaatatgaagatg 15624127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 15647883 - 15647915
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatg 44  Q
    |||||||||||||||||||| ||||||||||||    
T  15647883 aaaacattaaatgagatgagaaatatgaagatg 15647915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1113 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1113
Description:

Target: scaffold1113; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 1336 - 1403
Alignment:
Q  261 aacttgaggataaaacggaacatagttcaatttccttttcttactc--cacacaactgcctaatttta 326  Q
    ||||||||||||||||  |||||| |||||||||  ||||||||||  ||||||||||||||||||||    
T  1336 aacttgaggataaaacataacataattcaatttcaatttcttactctacacacaactgcctaatttta 1403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0961 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 2281 - 2214
Alignment:
Q  261 aacttgaggataaaacggaacatagttcaatttccttttcttactc--cacacaactgcctaatttta 326  Q
    ||||||||||||||||  |||||| |||||||||  ||||||||||  ||||||||||||||||||||    
T  2281 aacttgaggataaaacataacataattcaatttcaatttcttactctacacacaactgcctaatttta 2214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 7946588 - 7946630
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 54  Q
    |||||||||||||||||||  |||||||||||||||| |||||    
T  7946588 aaaacattaaatgagatgaagaatatgaagatgtcacatgtac 7946630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 2766128 - 2766170
Alignment:
Q  12 aaaacattaaatgagatgagcaatatgaagatgtcacgtgtac 54  Q
    |||||||||||||||||||  |||||||||||||||| |||||    
T  2766128 aaaacattaaatgagatgaagaatatgaagatgtcacatgtac 2766170  T

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