View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_high_5 (Length: 535)
Name: NF5539_high_5
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_high_5 |
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| [»] scaffold0496 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 235 - 519
Target Start/End: Complemental strand, 39174372 - 39174088
Alignment:
| Q |
235 |
tagcgagcaacaattaattgctactggggtattagtgtatttttgaattgtgaatgaggaatttcttaagtgaggagcaattttcttcttttaaatattt |
334 |
Q |
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| T |
39174372 |
tagcgggcaacaattaattgctactggggtattagtgtatttttgaattgtgaatgaggaatttcttaagtgaggaacaattttcttcttttaactattt |
39174273 |
T |
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| Q |
335 |
acgaatgaattaaatatataacctatctgatatgatctaaaccatatctttgtacacacacccgatgtaatggaaaatggcttagaatttgccaagttgg |
434 |
Q |
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| T |
39174272 |
acgaatgaattaaatatataacctatctgatatgatctaaaccatatttttgtacacacacccgatgtaatggaaaatggcttagaatttgccaagttgg |
39174173 |
T |
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| Q |
435 |
gttgatagctgcaccatactggcctgtccacttcaagttgagagttggccaaaaggacctaggcgaagactcgagtctccttggt |
519 |
Q |
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| T |
39174172 |
gttgatagctgcaccatactggcctgtccacttcaagttgagagttggccaaaaggacctaggcgaagactcgagtctccttggt |
39174088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 39174622 - 39174395
Alignment:
| Q |
11 |
cagagaccaattcaatgatttctttttcgttctttcaagtattatatatcagtttaatgtattggaaataatgttatatgaatattatactattcaatag |
110 |
Q |
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| T |
39174622 |
cagagaccaattcaatgatttctttttcgttctttcaagtattatatatcattgtaatgtattggaaataatgttatatgaatat-atacgattcaatag |
39174524 |
T |
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| Q |
111 |
gataagtagtttacacttttgttatcaaattgagagtcggtagagagactttaagcataagtttcagatttttgaatcataaattaactttcaataaggc |
210 |
Q |
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| T |
39174523 |
gataagtagtttacacttttgttatcaaattgagagtcggtagagagactttaagcataagtttcagatttttgaatcataaattaactttcaataaggc |
39174424 |
T |
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| Q |
211 |
catgggacttagcacaattacatttagcg |
239 |
Q |
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| T |
39174423 |
catgggacttagcacaattacatttagcg |
39174395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 405 - 519
Target Start/End: Original strand, 37147519 - 37147633
Alignment:
| Q |
405 |
tggaaaatggcttagaatttgccaagttgggttgatagctgcaccatactggcctgtccacttcaagttgagagttggccaaaaggacctaggcgaagac |
504 |
Q |
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| T |
37147519 |
tggaacatggcttaggatttgccaggttgggttagtggctgcaccatgctggcctgcccactccaagttgagagttggccaatgggacctaggcgaaggc |
37147618 |
T |
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| Q |
505 |
tcgagtctccttggt |
519 |
Q |
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| T |
37147619 |
ttgagtctccttggt |
37147633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 404 - 519
Target Start/End: Complemental strand, 46621620 - 46621505
Alignment:
| Q |
404 |
atggaaaatggcttagaatttgccaagttgggttgatagctgcaccatactggcctgtccacttcaagttgagagttggccaaaaggacctaggcgaaga |
503 |
Q |
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| T |
46621620 |
atggaacatggcttaagatttgccaggttgggttggtggctgcaccatgctggcctgcccactccaagttgagagttggccaatgtgacctaggcgaagg |
46621521 |
T |
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| Q |
504 |
ctcgagtctccttggt |
519 |
Q |
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| T |
46621520 |
cttgagtctccttggt |
46621505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 404 - 519
Target Start/End: Complemental strand, 46627353 - 46627237
Alignment:
| Q |
404 |
atggaaaatggcttagaatttgccaagttgggttgatagctgcaccatactggcctgtccacttcaagttgagagtt-ggccaaaaggacctaggcgaag |
502 |
Q |
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|||||| ||||||||| |||||||| ||||||||| | |||||||||| | |||||| || || ||||||||||||| |||||| |||||||||||||| |
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| T |
46627353 |
atggaacatggcttaggatttgccaggttgggttggtggctgcaccatgccggcctgcccgctccaagttgagagttgggccaatgggacctaggcgaag |
46627254 |
T |
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| Q |
503 |
actcgagtctccttggt |
519 |
Q |
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| T |
46627253 |
gcttgagtctccttggt |
46627237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0496 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0496
Description:
Target: scaffold0496; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 421 - 503
Target Start/End: Complemental strand, 12380 - 12298
Alignment:
| Q |
421 |
atttgccaagttgggttgatagctgcaccatactggcctgtccacttcaagttgagagttggccaaaaggacctaggcgaaga |
503 |
Q |
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| T |
12380 |
atttgtcatgttgggttgatgacttcactatgctggcctgaccactccaagttgagagttggtcaatgggacctaggcgaaga |
12298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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