View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_12 (Length: 398)
Name: NF5539_low_12
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_12 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0770 (1 HSPs) |
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| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 50566266 - 50565907
Alignment:
| Q |
1 |
aatataaagtagtttaatatgttaattataa---gtttaaatattagatgtgcggtcttcttctaggcttgaatgtgcccaacttttaatgtaaagaaag |
97 |
Q |
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|||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
50566266 |
aatataaattagtttaatgtgttaattatataaggtttaaatattagatgtgcattcttcttctagacttaaatgtgcccaacttttaatgtaaagaaag |
50566167 |
T |
|
| Q |
98 |
ggggaatgatgcaccctctttaaatgttttattatgggtttattttgagttcaaccttttaaat-tattcttagcctttcaagttcacaccgactaataa |
196 |
Q |
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| | || |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | |
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| T |
50566166 |
gtgaaaggatgcaccctctttaa-tgttttattgtgggtttattttgagttcaaccttttaaatgtattcttagcctttcaagttcacacaaactaatga |
50566068 |
T |
|
| Q |
197 |
ctgctgcataaattgattataaatatgtcttatgaacaactccttaatacatatgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtat |
296 |
Q |
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| T |
50566067 |
ctaccgcataaattgattataaatatgtcttatgaacaactctttagtacat--gagtatatgaaatttcaatttgagagggtatgtaagagtattgtag |
50565970 |
T |
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| Q |
297 |
aagaagaatttttagaaacttatgtgatcttattgtgtcttttttcttcttttctggagtcaac |
360 |
Q |
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| T |
50565969 |
aagaagaattcttaaaaaattatgttatcttattgtgcctttttt-ttcttctctggagtcaac |
50565907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 27 - 360
Target Start/End: Complemental strand, 50514040 - 50513729
Alignment:
| Q |
27 |
tataagtttaaatattagatgtgcggtcttcttctaggcttgaatgtgcccaacttttaatgtaaagaaagggggaatgatgcaccctctttaaatgttt |
126 |
Q |
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| T |
50514040 |
tataagtttaaatattagatgtgcattcttcttctagacttaaatgtgcccaacttttaatgtaaagaaaggtgaaaggatgcaccctcttt-aatgttt |
50513942 |
T |
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| Q |
127 |
tattatgggtttattttgagttcaaccttttaaa-ttattcttagcctttcaagttcacaccgactaataactgctgcataaattgattataaatatgtc |
225 |
Q |
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| T |
50513941 |
tattgtggatttattttgagttcaaccttttaaatttattcttagcctttcaagttcacacagactaata----------------------aatatgtc |
50513864 |
T |
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| Q |
226 |
ttatgaacaactccttaatacatatgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaagaatttttagaaacttatgtgatc |
325 |
Q |
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| T |
50513863 |
ttatgaacaactctttagtacatatgagtatatgaaatttcaatttgagagggtatgtaagagtattgttgaagaagaactcttaaaaacttatgtgatc |
50513764 |
T |
|
| Q |
326 |
ttattgtgtcttttttcttcttttctggagtcaac |
360 |
Q |
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| T |
50513763 |
ttattgtgtcttttttcttcttctctggagtcaac |
50513729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 279 - 398
Target Start/End: Complemental strand, 38924568 - 38924449
Alignment:
| Q |
279 |
tatgtaagagtattgtataagaagaatttttagaaacttatgtgatcttattgtgtcttttttcttcttttctggagtcaacggggaagatactatggtg |
378 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |
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| T |
38924568 |
tatgtaagagtattgtataagaagaatttttaaaaacttatgtgatcttattgtgtcttttttcttcttctctggagtcaacggggaagatactatggcg |
38924469 |
T |
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| Q |
379 |
cagagttgatccttttaact |
398 |
Q |
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||||||||||||| |||||| |
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| T |
38924468 |
cagagttgatcctattaact |
38924449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 38924681 - 38924568
Alignment:
| Q |
1 |
aatataaagtagtttaatatgttaattataagtttaaatattagatgtgcggtcttcttctaggcttgaatgtgcccaacttttaatgtaaagaaagggg |
100 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38924681 |
aatataaattagtttaatacgttaattataagtttaaatattagatgtgcggtcttcttctaggtttgaatgtgcccaacttttaatgtaaagaaaggga |
38924582 |
T |
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| Q |
101 |
gaatgatgcaccct |
114 |
Q |
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|||| |||||||| |
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| T |
38924581 |
aaatgttgcaccct |
38924568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0770 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0770
Description:
Target: scaffold0770; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 4518 - 4586
Alignment:
| Q |
229 |
tgaacaactccttaatacata-tgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaa |
301 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
4518 |
tgaacaactccttagtacataatgagtgtatgaaatttcaatttgagagg-----taagagtattgtagaagaa |
4586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 102822 - 102890
Alignment:
| Q |
229 |
tgaacaactccttaatacata-tgagtgtatgaaatttcaatttgagagggtatgtaagagtattgtataagaa |
301 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
102822 |
tgaacaactccttagtacataatgagtgtatgaaatttcaatttgagagg-----taagagtattgtagaagaa |
102890 |
T |
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