View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_16 (Length: 373)
Name: NF5539_low_16
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 50781833 - 50782175
Alignment:
| Q |
10 |
attatactccacatcgacccttgtcttgtctaggttgtaaaataagtttggtcaaaattttctaaagtctattaactagctaacaaataatatattttat |
109 |
Q |
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| T |
50781833 |
attagactccacatcgacccttgtcttgtctaggttgtaaaataagtttggtcaaaattttctaaagtctattaactagctaacaaataatatattttat |
50781932 |
T |
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| Q |
110 |
accatccaaacaaactttctaaagttgacgaatcaaccaatatttacctagataaagacacggtccttagttcaactaaaggtcattcaatgttatcgtt |
209 |
Q |
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| T |
50781933 |
accatccaaacaaactttctaaagttgacgaatcaaccaatatt-----agataaagacacggtccatagttcaactaaaggtcattcaatgctatcgtt |
50782027 |
T |
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| Q |
210 |
atttgttgaatatatcgtgtctctcaaaataaatttctagttccataacatagagtctacaaattttgatggaatgtcttacgcgaacagtacataccta |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50782028 |
atttgttgaatatatcgtgtctctcaaaataaatttctagtaacataacataaagtctacaaattttgatggaatgtcttacgcgaacagtacataccta |
50782127 |
T |
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| Q |
310 |
atgctaatgtaaataaataatcttacaatatttgttgtgtgaaataac |
357 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
50782128 |
atgctaatgtaaataaataatcttacaatattttttgtgtgaaataac |
50782175 |
T |
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