View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5539_low_17 (Length: 372)
Name: NF5539_low_17
Description: NF5539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5539_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 149 - 348
Target Start/End: Original strand, 26262724 - 26262942
Alignment:
| Q |
149 |
cgatctagcaaatttcattttcatattttaccaacgcaaagaagaaaatgacgattatggagaacaatagta-------------------catttcttc |
229 |
Q |
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| T |
26262724 |
cgatctagcaaatttcattttcatattttaccaacgcaaagaagaaaatgacaattatggagaataatagtacatttcttcaaccagagtacatttcttc |
26262823 |
T |
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| Q |
230 |
tttgcgttgataaaatatgttgcaaccatagtacatttctttagttgctttctgtaacgttcttcgctttaatgtttcgtccaacatgcatgcatatgta |
329 |
Q |
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| T |
26262824 |
tttgccttggtaaaatatgttgcaaccatactacatttctttagttgctttctataacgttcttcgctttaaagtttcgtccaacatgcatgcatatgta |
26262923 |
T |
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| Q |
330 |
aactattattcttgtacta |
348 |
Q |
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| T |
26262924 |
aactattatttttgtacta |
26262942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 2 - 86
Target Start/End: Original strand, 26262574 - 26262659
Alignment:
| Q |
2 |
gagattccagattcgtgttgtagaaaagagaataatgtttcaaacaaataatatgagg-taataatagcagggttttttgtaccag |
86 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
26262574 |
gagattccagattcgtgttgtagaaaagagaataatgtttcaaacaaataatatgaggttaataatagcaggggtttttgtaccag |
26262659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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